/[PAMELA software]/PamelaLevel2/src/PamLevel2.cpp
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revision 1.5 by pam-fi, Mon Oct 9 08:57:42 2006 UTC revision 1.97 by pam-fi, Fri Oct 17 06:54:11 2014 UTC
# Line 1  Line 1 
1  #include <PamLevel2.h>  #include <PamLevel2.h>
2    
3    /////////////////////////////////////////////////////////////////////////////
4    /////////////////////////////////////////////////////////////////////////////
5    /////////////////////////////////////////////////////////////////////////////
6    /////////////////////////////////////////////////////////////////////////////
7    
8    void GPamela::Clear() {
9      Irun = 0;
10      Ievnt = 0;
11      Ipa = 0;
12      X0 = 0.;
13      Y0 = 0.;
14      Z0 = 0.;
15      Theta = 0.;
16      Phi = 0.;
17      P0 = 0.;
18      Nthtof = 0;
19      Nthcat = 0;
20      Nthcas = 0;
21      Nthspe = 0;
22      Nstrpx = 0;
23      Nstrpy = 0;
24      Nthcali = 0;
25      Nthcal = 0;
26      Nthnd = 0;
27      Nthcard = 0;
28    }
29    
30    void GPamela::Delete() {
31    
32      Clear();
33      /* EM all these are in the stack not in the heap, so no need to delete by hand...
34      delete[] Ipltof;
35      delete[] Ipaddle;
36      delete[] Ipartof;
37      delete[] Xintof;
38      delete[] Yintof;
39      delete[] Zintof;
40      delete[] Xouttof;
41      delete[] Youttof;
42      delete[] Zouttof;
43      delete[] Ereltof;
44      delete[] Timetof;
45      delete[] Pathtof;
46      delete[] P0tof;
47      delete[] Iparcat;
48      delete[] Icat;
49      delete[] Xincat;
50      delete[] Yincat;
51      delete[] Zincat;
52      delete[] Xoutcat;
53      delete[] Youtcat;
54      delete[] Zoutcat;
55      delete[] Erelcat;
56      delete[] Timecat;
57      delete[] Pathcat;
58      delete[] P0cat;
59      delete[] Iparcas;
60      delete[] Icas;
61      delete[] Xincas;
62      delete[] Yincas;
63      delete[] Zincas;
64      delete[] Xoutcas;
65      delete[] Youtcas;
66      delete[] Zoutcas;
67      delete[] Erelcas;
68      delete[] Timecas;
69      delete[] Pathcas;
70      delete[] P0cas;
71      delete[] Iparspe;
72      delete[] Itrpb;
73      delete[] Itrsl;
74      delete[] Itspa;
75      delete[] Xinspe;
76      delete[] Yinspe;
77      delete[] Zinspe;
78      delete[] Xoutspe;
79      delete[] Youtspe;
80      delete[] Zoutspe;
81      delete[] Xavspe;
82      delete[] Yavspe;
83      delete[] Zavspe;
84      delete[] Erelspe;
85      delete[] Pathspe;
86      delete[] P0spe;
87      delete[] Nxmult;
88      delete[] Nymult;
89      delete[] Npstripx;
90      delete[] Ntstripx;
91      delete[] Istripx;
92      delete[] Qstripx;
93      delete[] Xstripx;
94      delete[] Npstripy;
95      delete[] Ntstripy;
96      delete[] Istripy;
97      delete[] Qstripy;
98      delete[] Ystripy;
99      delete[] Icaplane;
100      delete[] Icastrip;
101      delete[] Icamod;
102      delete[] Enestrip;
103      delete[] Icapl;
104      delete[] Icasi;
105      delete[] Icast;
106      delete[] Xincal;
107      delete[] Yincal;
108      delete[] Zincal;
109      delete[] Erelcal;
110      delete[] Itubend;
111      delete[] Iparnd;
112      delete[] Xinnd;
113      delete[] Yinnd;
114      delete[] Zinnd;
115      delete[] Xoutnd;
116      delete[] Youtnd;
117      delete[] Zoutnd;
118      delete[] Erelnd;
119      delete[] Timend;
120      delete[] Pathnd;
121      delete[] P0nd;
122      delete[] Iparcard;
123      delete[] Icard;
124      delete[] Xincard;
125      delete[] Yincard;
126      delete[] Zincard;
127      delete[] Xoutcard;
128      delete[] Youtcard;
129      delete[] Zoutcard;
130      delete[] Erelcard;
131      delete[] Timecard;
132      delete[] Pathcard;
133      delete[] P0card;
134      */
135    }
136    
137    
138    void GPamela::SetBranchAddress(TChain* fhBookTree) {
139    
140      //    cout << "fhBookTree "<<fhBookTree << endl;
141      // prepare tree
142      fhBookTree->SetBranchAddress("Irun", &Irun);
143      fhBookTree->SetBranchAddress("Ievnt", &Ievnt);
144      fhBookTree->SetBranchAddress("Ipa", &Ipa);
145      fhBookTree->SetBranchAddress("X0", &X0);
146      fhBookTree->SetBranchAddress("Y0", &Y0);
147      fhBookTree->SetBranchAddress("Z0", &Z0);
148      fhBookTree->SetBranchAddress("Theta", &Theta);
149      fhBookTree->SetBranchAddress("Phi", &Phi);
150      fhBookTree->SetBranchAddress("P0", &P0);
151      fhBookTree->SetBranchAddress("Nthtof", &Nthtof);
152      fhBookTree->SetBranchAddress("Ipltof", Ipltof);
153      fhBookTree->SetBranchAddress("Ipaddle", Ipaddle);
154      fhBookTree->SetBranchAddress("Ipartof", Ipartof);
155      fhBookTree->SetBranchAddress("Xintof", Xintof);
156      fhBookTree->SetBranchAddress("Yintof", Yintof);
157      fhBookTree->SetBranchAddress("Zintof", Zintof);
158      fhBookTree->SetBranchAddress("Xouttof", Xouttof);
159      fhBookTree->SetBranchAddress("Youttof", Youttof);
160      fhBookTree->SetBranchAddress("Zouttof", Zouttof);
161      fhBookTree->SetBranchAddress("Ereltof", Ereltof);
162      fhBookTree->SetBranchAddress("Timetof", Timetof);
163      fhBookTree->SetBranchAddress("Pathtof", Pathtof);
164      fhBookTree->SetBranchAddress("P0tof", P0tof);
165      fhBookTree->SetBranchAddress("Nthcat", &Nthcat);
166      fhBookTree->SetBranchAddress("Iparcat", Iparcat);
167      fhBookTree->SetBranchAddress("Icat", Icat);
168      fhBookTree->SetBranchAddress("Xincat", Xincat);
169      fhBookTree->SetBranchAddress("Yincat", Yincat);
170      fhBookTree->SetBranchAddress("Zincat", Zincat);
171      fhBookTree->SetBranchAddress("Xoutcat", Xoutcat);
172      fhBookTree->SetBranchAddress("Youtcat", Youtcat);
173      fhBookTree->SetBranchAddress("Zoutcat", Zoutcat);
174      fhBookTree->SetBranchAddress("Erelcat", Erelcat);
175      fhBookTree->SetBranchAddress("Timecat", Timecat);
176      fhBookTree->SetBranchAddress("Pathcat", Pathcat);
177      fhBookTree->SetBranchAddress("P0cat", P0cat);
178      fhBookTree->SetBranchAddress("Nthcas", &Nthcas);
179      fhBookTree->SetBranchAddress("Iparcas", Iparcas);
180      fhBookTree->SetBranchAddress("Icas", Icas);
181      fhBookTree->SetBranchAddress("Xincas", Xincas);
182      fhBookTree->SetBranchAddress("Yincas", Yincas);
183      fhBookTree->SetBranchAddress("Zincas", Zincas);
184      fhBookTree->SetBranchAddress("Xoutcas", Xoutcas);
185      fhBookTree->SetBranchAddress("Youtcas", Youtcas);
186      fhBookTree->SetBranchAddress("Zoutcas", Zoutcas);
187      fhBookTree->SetBranchAddress("Erelcas", Erelcas);
188      fhBookTree->SetBranchAddress("Timecas", Timecas);
189      fhBookTree->SetBranchAddress("Pathcas", Pathcas);
190      fhBookTree->SetBranchAddress("P0cas", P0cas);
191      fhBookTree->SetBranchAddress("Nthspe", &Nthspe);
192      fhBookTree->SetBranchAddress("Iparspe", Iparspe);
193      fhBookTree->SetBranchAddress("Itrpb", Itrpb);
194      fhBookTree->SetBranchAddress("Itrsl", Itrsl);
195      fhBookTree->SetBranchAddress("Itspa", Itspa);
196      fhBookTree->SetBranchAddress("Xinspe", Xinspe);
197      fhBookTree->SetBranchAddress("Yinspe", Yinspe);
198      fhBookTree->SetBranchAddress("Zinspe", Zinspe);
199      fhBookTree->SetBranchAddress("Xoutspe", Xoutspe);
200      fhBookTree->SetBranchAddress("Youtspe", Youtspe);
201      fhBookTree->SetBranchAddress("Zoutspe", Zoutspe);
202      fhBookTree->SetBranchAddress("Xavspe", Xavspe);
203      fhBookTree->SetBranchAddress("Yavspe", Yavspe);
204      fhBookTree->SetBranchAddress("Zavspe", Zavspe);
205      fhBookTree->SetBranchAddress("Erelspe", Erelspe);
206      fhBookTree->SetBranchAddress("Pathspe", Pathspe);
207      fhBookTree->SetBranchAddress("P0spe", P0spe);
208      fhBookTree->SetBranchAddress("Nxmult", Nxmult);
209      fhBookTree->SetBranchAddress("Nymult", Nymult);
210      fhBookTree->SetBranchAddress("Nstrpx", &Nstrpx);
211      fhBookTree->SetBranchAddress("Npstripx", Npstripx);
212      fhBookTree->SetBranchAddress("Ntstripx", Ntstripx);
213      fhBookTree->SetBranchAddress("Istripx", Istripx);
214      fhBookTree->SetBranchAddress("Qstripx", Qstripx);
215      fhBookTree->SetBranchAddress("Xstripx", Xstripx);
216      fhBookTree->SetBranchAddress("Nstrpy", &Nstrpy);
217      fhBookTree->SetBranchAddress("Npstripy", Npstripy);
218      fhBookTree->SetBranchAddress("Ntstripy", Ntstripy);
219      fhBookTree->SetBranchAddress("Istripy", Istripy);
220      fhBookTree->SetBranchAddress("Qstripy", Qstripy);
221      fhBookTree->SetBranchAddress("Ystripy", Ystripy);
222      fhBookTree->SetBranchAddress("Nthcali", &Nthcali);
223      fhBookTree->SetBranchAddress("Icaplane", Icaplane);
224      fhBookTree->SetBranchAddress("Icastrip", Icastrip);
225      fhBookTree->SetBranchAddress("Icamod", Icamod);
226      fhBookTree->SetBranchAddress("Enestrip", Enestrip);
227      fhBookTree->SetBranchAddress("Nthcal", &Nthcal);
228      fhBookTree->SetBranchAddress("Icapl", Icapl);
229      fhBookTree->SetBranchAddress("Icasi", Icasi);
230      fhBookTree->SetBranchAddress("Icast", Icast);
231      fhBookTree->SetBranchAddress("Xincal", Xincal);
232      fhBookTree->SetBranchAddress("Yincal", Yincal);
233      fhBookTree->SetBranchAddress("Zincal", Zincal);
234      fhBookTree->SetBranchAddress("Erelcal", Erelcal);
235      fhBookTree->SetBranchAddress("Nthnd", &Nthnd);
236      fhBookTree->SetBranchAddress("Itubend", Itubend);
237      fhBookTree->SetBranchAddress("Iparnd", Iparnd);
238      fhBookTree->SetBranchAddress("Xinnd", Xinnd);
239      fhBookTree->SetBranchAddress("Yinnd", Yinnd);
240      fhBookTree->SetBranchAddress("Zinnd", Zinnd);
241      fhBookTree->SetBranchAddress("Xoutnd", Xoutnd);
242      fhBookTree->SetBranchAddress("Youtnd", Youtnd);
243      fhBookTree->SetBranchAddress("Zoutnd", Zoutnd);
244      fhBookTree->SetBranchAddress("Erelnd", Erelnd);
245      fhBookTree->SetBranchAddress("Timend", Timend);
246      fhBookTree->SetBranchAddress("Pathnd", Pathnd);
247      fhBookTree->SetBranchAddress("P0nd", P0nd);
248      fhBookTree->SetBranchAddress("Nthcard", &Nthcard);
249      fhBookTree->SetBranchAddress("Iparcard", Iparcard);
250      fhBookTree->SetBranchAddress("Icard", Icard);
251      fhBookTree->SetBranchAddress("Xincard", Xincard);
252      fhBookTree->SetBranchAddress("Yincard", Yincard);
253      fhBookTree->SetBranchAddress("Zincard", Zincard);
254      fhBookTree->SetBranchAddress("Xoutcard", Xoutcard);
255      fhBookTree->SetBranchAddress("Youtcard", Youtcard);
256      fhBookTree->SetBranchAddress("Zoutcard", Zoutcard);
257      fhBookTree->SetBranchAddress("Erelcard", Erelcard);
258      fhBookTree->SetBranchAddress("Timecard", Timecard);
259      fhBookTree->SetBranchAddress("Pathcard", Pathcard);
260      fhBookTree->SetBranchAddress("P0card", P0card);
261    
262      //    fhBookTree->SetBranchStatus("*",0);
263    
264    }
265    
266    ClassImp( GPamela);
267    
268    /////////////////////////////////////////////////////////////////////////////
269    /////////////////////////////////////////////////////////////////////////////
270    /////////////////////////////////////////////////////////////////////////////
271    /////////////////////////////////////////////////////////////////////////////
272  //--------------------------------------  //--------------------------------------
273  //  //
274  //  //
275  //--------------------------------------  //--------------------------------------
276  /**  /**
277   * Default constructor   * Default constructor
278   */   */
279  PamTrack::PamTrack(){  PamTrack::PamTrack() {
280      trk_track  = this->TrkTrack::GetTrkTrack();    trk_track = 0;
281      calo_track = this->CaloTrkVar::GetCaloTrkVar();    trk_ext_track = 0;
282      tof_track  = this->ToFTrkVar::GetToFTrkVar();    calo_track = 0;
283  };    tof_track = 0;
284      orb_track = 0;
285      candeleteobj = 0;
286      pscore = 0;
287      iscore = 0;
288    }
289    ;
290  //--------------------------------------  //--------------------------------------
291  //  //
292  //  //
293  //--------------------------------------  //--------------------------------------
294  /**  /**
295   * Constructor   * Constructor
296   */   */
297  PamTrack::PamTrack(TrkTrack* t, CaloTrkVar* c, ToFTrkVar* o){  PamTrack::PamTrack(TrkTrack* t, CaloTrkVar* c, ToFTrkVar* o, OrbitalInfoTrkVar *r) {
298      trk_track  = this->TrkTrack::GetTrkTrack();  
299      calo_track = this->CaloTrkVar::GetCaloTrkVar();    trk_ext_track = 0;
300      tof_track  = this->ToFTrkVar::GetToFTrkVar();    trk_track = 0;
301      if(t) *trk_track  = *t;    calo_track = 0;
302      if(c) *calo_track = *c;    tof_track = 0;
303      if(o) *tof_track  = *o;        orb_track = 0;
304  };    //     if(t)trk_track  = new TrkTrack(*t);
305      //     if(c)calo_track = new CaloTrkVar(*c);
306      //     if(o)tof_track  = new ToFTrkVar(*o);
307    //   if (t)
308    //     trk_track = t;
309    //   if (c)
310    //     calo_track = c;
311    //   if (o)
312    //     tof_track = o;
313    //   if (r)
314    //     orb_track = r;
315    
316    //   candeleteobj = 0;
317    
318    
319      if (t){
320          trk_track = new TrkTrack(*t);
321          trk_ext_track = new ExtTrack(*t);//NB!! ha dimensione 6 invece che 8
322      }
323      if (c)
324        calo_track = new CaloTrkVar(*c);
325      if (o)
326        tof_track = new ToFTrkVar(*o);
327      if (r)
328        orb_track = new OrbitalInfoTrkVar(*r);
329      candeleteobj = 1;
330    
331    }
332    ;
333    /**
334     * Constructor
335     */
336    PamTrack::PamTrack(ExtTrack* t, CaloTrkVar* c, ToFTrkVar* o, OrbitalInfoTrkVar *r) {
337    
338      trk_ext_track = 0;
339      trk_track = 0;
340      calo_track = 0;
341      tof_track = 0;
342      orb_track = 0;
343      //     if(t)trk_track  = new TrkTrack(*t);
344      //     if(c)calo_track = new CaloTrkVar(*c);
345      //     if(o)tof_track  = new ToFTrkVar(*o);
346    //   if (t)
347    //     trk_track = t;
348    //   if (c)
349    //     calo_track = c;
350    //   if (o)
351    //     tof_track = o;
352    //   if (r)
353    //     orb_track = r;
354    
355    //   candeleteobj = 0;
356    
357    
358      if (t){
359    ////      trk_track = new TrkTrack(*t);//in this case TrkTrack object remains null
360          trk_ext_track = new ExtTrack(*t);
361      }
362      if (c)
363        calo_track = new CaloTrkVar(*c);
364      if (o)
365        tof_track = new ToFTrkVar(*o);
366      if (r)
367        orb_track = new OrbitalInfoTrkVar(*r);
368      candeleteobj = 1;
369      pscore = 0;
370      iscore = 0;
371    
372    }
373    ;
374    PamTrack::PamTrack(const PamTrack& track) {
375    
376      TrkTrack *t = track.trk_track;
377      ExtTrack *e = track.trk_ext_track;
378      CaloTrkVar *c = track.calo_track;
379      ToFTrkVar *o = track.tof_track;
380      OrbitalInfoTrkVar *r = track.orb_track;
381    
382      trk_ext_track = 0;
383      trk_track     = 0;
384      calo_track    = 0;
385      tof_track     = 0;
386      orb_track     = 0;
387      if(e)
388          trk_ext_track = new ExtTrack(*e);
389      if (t)
390        trk_track = new TrkTrack(*t);
391      if (c)
392        calo_track = new CaloTrkVar(*c);
393      if (o)
394        tof_track = new ToFTrkVar(*o);
395      if (r)
396        orb_track = new OrbitalInfoTrkVar(*r);
397    
398      candeleteobj = 1;
399      pscore = 0;
400      iscore = 0;
401    
402    }
403    void PamTrack::Clear(Option_t *option) {
404    
405    //    cout << "PamTrack::Clear( "<<option<<" ) "<<candeleteobj<<endl;
406      if (candeleteobj) {
407          
408        if (trk_ext_track)
409          trk_ext_track->ExtTrack::Clear(option);
410        if (trk_track)
411          trk_track->TrkTrack::Clear();
412        if (calo_track)
413          calo_track->CaloTrkVar::Clear();//???
414        if (tof_track)
415          tof_track->ToFTrkVar::Clear();//???
416        if (orb_track)
417          orb_track->OrbitalInfoTrkVar::Clear();//???
418      }
419      else {
420        trk_ext_track = 0;
421        trk_track = 0;
422        calo_track = 0;
423        tof_track = 0;
424        orb_track = 0;
425      }
426      pscore = 0;
427      iscore = 0;
428    
429    }
430    void PamTrack::Delete() {
431      //    cout << "PamTrack::Delete() "<<candeleteobj<<endl;
432      if (candeleteobj) {
433        if (trk_ext_track) {
434          trk_ext_track->ExtTrack::Clear("C");
435          delete trk_ext_track;
436        }
437        if (trk_track) {
438          trk_track->TrkTrack::Clear();
439          delete trk_track;
440        }
441        if (calo_track) {
442          calo_track->CaloTrkVar::Clear();//???
443          delete calo_track;
444        }
445        if (tof_track) {
446          tof_track->ToFTrkVar::Clear();//???
447          delete tof_track;
448        }
449        if (orb_track) {
450          orb_track->OrbitalInfoTrkVar::Clear();//???
451          delete orb_track;
452        }
453      }
454      else {
455        Clear();
456      }
457    }
458    
459    
460    
461    
462  //--------------------------------------  //--------------------------------------
463  //  //
464  //  //
465  //--------------------------------------  //--------------------------------------
466  /**  /**
467   * Constructor   * Default Constructor
468   */   */
469  PamLevel2::PamLevel2(){  PamLevel2::PamLevel2() {
470              Initialize();
471      trk_l1_obj  = this->TrkLevel1::GetTrkLevel1();        }
         trk_obj     = this->TrkLevel2::GetTrkLevel2();  
         calo_obj    = this->CaloLevel2::GetCaloLevel2();  
     tof_obj     = this->ToFLevel2::GetToFLevel2();  
     trig_obj    = this->TrigLevel2::GetTrigLevel2();  
     s4_obj      = this->S4Level2::GetS4Level2();  
     nd_obj      = this->NDLevel2::GetNDLevel2();  
     ac_obj      = this->AcLevel2::GetAcLevel2();  
         orb_obj     = this->OrbitalInfo::GetOrbitalInfo();  
472    
         run_obj     = new GL_RUN();  
           
         sorted_tracks = new TRefArray();  
473    
474          CAL = true;  /**
475          TRK = true;   * Constructor
476          TRG = true;   * @param ddir Name of directory where level2 files are stored.
477          TOF = true;   * @param list Name of an ascii file containing the list of file names
478          S4  = true;   * @param detlist Options to chose what to load.
479          ND  = true;   * Possible options are:
480          AC  = true;   *       +AUTO --> load all trees/branches in the input files
481          ORB = true;   *       +(-)ALL --> inlcude(exclude) all trees/branches
482     *       +(-)TRK1+(-)TRK2+(-)CAL1+(-)CAL2+(-)TOF+(-)TRG+(-)ND+(-)S4+(-)ORB+(-)AC --> inlcude(exclude) trees and branches
483     *       +(-)TRK0 --> include(exclude) tracker level0 tree
484     *       +(-)GP --> include exclude GPAMELA output tree
485     * If no options are specified, the default is assumed. Default is:
486     * +TRK2+CAL2+CAL1+TOF+TRG+ND+AC+S4+ORB
487     */
488    PamLevel2::PamLevel2(TString ddir, TString llist, TString detlist) {
489      Initialize();
490      TList* listf = GetListOfLevel2Files(ddir, llist);
491      if (listf)
492        GetPamTree(listf, detlist);
493      if (listf)
494        GetRunTree(listf);
495      SetMaxShift(-1);
496    }
497    
498    
499          TRK_L1 = false;  PamLevel2::PamLevel2(TString ddir, TList *llist, TString detlist) {
500      Initialize();
501      GetPamTree(llist, detlist);
502      GetRunTree(llist);
503      SetMaxShift(-1);
504    }
505    
         Tout  = NULL;  
 };  
506  /**  /**
507   * Destructor   * Constructor
508     * @param ddir Name of directory where level2 files are stored.
509     * @param list Name of an ascii file containing the list of file names
510     * Default trees/branches are loaded. Default is:
511     * +TRK2+CAL2+CAL1+TOF+TRG+ND+AC+S4+ORB
512   */   */
513  PamLevel2::~PamLevel2(){  PamLevel2::PamLevel2(TString ddir, TString llist) {
514                      Initialize();
515          TrkLevel1::Clear();    TList* listf = GetListOfLevel2Files(ddir, llist);
516              cout << "GetPamTree: "<<endl;
517          TrkLevel2::Clear();    GetPamTree(listf, "");
518          CaloLevel2::Clear();    cout << "GetRunTree: "<<endl;
519          ToFLevel2::Clear();    GetRunTree(listf);
520          TrigLevel2::Clear();    SetMaxShift(-1);
521          S4Level2::Clear();  }
522          NDLevel2::Clear();  
523          AcLevel2::Clear();  
524          OrbitalInfo::Clear();  void PamLevel2::Initialize() {
525            
526          delete run_obj;    h0_obj = 0;
527              trk0_obj = 0;
528  //      delete sorted_tracks;    calo0_obj = 0;
529          sorted_tracks->Delete(); // clean the reference array  
530              trk2_obj = 0;
531          if(Tout)Tout->Delete(); // delete loaded tree from memory    trk1_obj = 0;
532              trkh_obj = 0;
533  };    calo1_obj = 0;
534      calo2_obj = 0;
535      tof2_obj = 0;
536      trig_obj = 0;
537      s4_obj = 0;
538      nd_obj = 0;
539      ac_obj = 0;
540      orb2_obj = 0;
541      gp_obj = 0;
542    
543      extAlgFlag=0;
544    
545      trk_ext_obj     = 0;
546      trk_ext_nuc_obj = 0;
547      trk_nuc_obj     = 0;
548      
549      calo_ext_obj     = 0;
550      calo_ext_nuc_obj = 0;
551      calo_nuc_obj     = 0;
552      
553      tof_ext_obj     = 0;
554      tof_ext_nuc_obj = 0;
555      tof_nuc_obj     = 0;
556      
557      orb_ext_obj     = 0;
558      orb_ext_nuc_obj = 0;
559      orb_nuc_obj     = 0;
560    
561      trk2_nuc_obj  = 0;
562      calo2_nuc_obj = 0;
563      tof2_nuc_obj  = 0;
564      orb2_nuc_obj  = 0;
565    
566    
567      run_obj = 0;//new GL_RUN();
568      soft_obj = 0;// Emiliano
569      irun = -1LL;
570      irunt = -1LL;
571      totrunentry = 0LL;
572      totrunentrymax = 0LL;
573      totrunentrymin = 0LL;
574      runfirstentry = 0LL;
575      runlastentry = 0LL;
576      gltsync = 0; // Emiliano
577      fUpdateRunInfo = true; // Emiliano
578      fUseDBinRunInfo = true; // Emiliano
579      isSync = false; // by default assume that the level2 file(s) is(are) not sinchronized between L0/DB and L2, that is we miss some packets in L2 due to nested/DV-skipped events
580      il0entry = 0LL;
581      //  hasL0EE = true;
582    
583      l0_file = NULL;
584      l0_tree = NULL;
585      iroot = -1;
586      dbc = 0;
587    
588      prevshift = 0;
589      yprevshift = 0;
590      maxshift = 10; //EMILIANO now overridden by SetMaxShift(-1) called by constructors
591    
592      run_tree = NULL;
593      run_tree_clone = NULL;
594      sel_tree = NULL;
595      sel_tree_clone = NULL;
596    
597      irunentry = -1LL;
598      pam_tree = NULL;
599      for (Int_t i = 0; i < NCLONES; i++)
600        pam_tree_clone[i] = NULL;
601    
602      totdltime[0] = 0LL;
603      totdltime[1] = 0LL;
604      totdltime[2] = 0LL;
605    
606      host = "mysql://localhost/pamelaprod";
607      user = "anonymous";
608      psw = "";
609      const char *pamdbhost = gSystem->Getenv("PAM_DBHOST");
610      const char *pamdbuser = gSystem->Getenv("PAM_DBUSER");
611      const char *pamdbpsw = gSystem->Getenv("PAM_DBPSW");
612      if (!pamdbhost)
613        pamdbhost = "";
614      if (!pamdbuser)
615        pamdbuser = "";
616      if (!pamdbpsw)
617        pamdbpsw = "";
618      if (strcmp(pamdbhost, ""))
619        host = pamdbhost;
620      if (strcmp(pamdbuser, ""))
621        user = pamdbuser;
622      if (strcmp(pamdbpsw, ""))
623        psw = pamdbpsw;
624    
625      //    sorted_tracks = 0;//new TRefArray();
626    
627      CAL0 = false;
628      CAL1 = true;
629      CAL2 = true;
630      TRK2 = true;
631      TRK1 = false;
632      TRK0 = false;
633      TRKh = false;
634      TRG = true;
635      TOF = true;
636      TOF0 = false;
637      S4 = true;
638      ND = true;
639      AC = true;
640      ORB = true;
641      GP = false;
642    
643      EXT = false;
644      NUC = false;
645      trkAlg = "STD";//default tracking algorythm
646    
647      RUN = true;
648    
649      SELLI = -1;
650    
651      ISGP = false;
652    
653      DBG = false;
654    
655      tsorted = 0;
656      timage = 0;
657      text = 0 ;
658    
659      tsorted_nuc = 0;
660      timage_nuc = 0;
661      text_nuc = 0 ;
662    
663      howtosort = "+CAL+TOF";
664      //howtosort = "+TOF";
665      sortthr = 100.;
666    
667      issorted = false;
668      lastsorted = -1;
669      issorted_new = false;
670      lastsorted_new = -1;
671    
672    }
673    ;
674  /**  /**
675   * Clear the event   * Delete the event (act as Dtor)
676   */   */
677  void PamLevel2::Clear(){  void PamLevel2::Delete() {
           
         TrkLevel1::Clear();  
           
         TrkLevel2::Clear();  
         CaloLevel2::Clear();  
         ToFLevel2::Clear();  
         TrigLevel2::Clear();  
         S4Level2::Clear();  
         NDLevel2::Clear();  
         AcLevel2::Clear();  
         OrbitalInfo::Clear();  
           
         sorted_tracks->Delete(); // clean the reference array  
           
 };  
678    
679      if (run_obj)
680        delete run_obj;
681      if (soft_obj)
682        delete soft_obj; //Emiliano
683    
684      //    cout << "void PamLevel2::Clear()"<<endl;
685      if (h0_obj)
686        delete h0_obj;
687      if (trk0_obj)
688        delete trk0_obj;
689      if (calo0_obj)
690        delete calo0_obj;
691      if (trk1_obj)
692        delete trk1_obj;
693      if (trk2_obj)
694        delete trk2_obj;
695      if (trkh_obj)
696        delete trkh_obj;
697      if (calo1_obj)
698        delete calo1_obj;
699      if (calo2_obj)
700        delete calo2_obj;
701      if (tof2_obj)
702        delete tof2_obj;
703      if (trig_obj)
704        delete trig_obj;
705      if (s4_obj)
706        delete s4_obj;
707      if (nd_obj)
708        delete nd_obj;
709      if (ac_obj)
710        delete ac_obj;
711      if (orb2_obj)
712        delete orb2_obj;
713      if (gp_obj)
714        delete gp_obj;
715    
716      if(trk_nuc_obj)trk_nuc_obj->Delete();
717      if(trk_ext_obj)trk_ext_obj->Delete();
718      if(trk_ext_nuc_obj)trk_ext_nuc_obj->Delete();
719    
720      if(calo_nuc_obj)calo_nuc_obj->Delete();
721      if(calo_ext_obj)calo_ext_obj->Delete();
722      if(calo_ext_nuc_obj)calo_ext_nuc_obj->Delete();
723    
724      if(tof_nuc_obj)tof_nuc_obj->Delete();
725      if(tof_ext_obj)tof_ext_obj->Delete();
726      if(tof_ext_nuc_obj)tof_ext_nuc_obj->Delete();
727    
728      if(orb_nuc_obj)orb_nuc_obj->Delete();
729      if(orb_ext_obj)orb_ext_obj->Delete();
730      if(orb_ext_nuc_obj)orb_ext_nuc_obj->Delete();
731    
732    
733      if(trk2_nuc_obj)trk2_nuc_obj->Delete();;
734      if( calo2_nuc_obj)calo2_nuc_obj->Delete();;
735      if(tof2_nuc_obj)tof2_nuc_obj->Delete();;
736      if(orb2_nuc_obj)orb2_nuc_obj->Delete();;
737      
738    
739    
740      if (tsorted) {
741        tsorted->Delete();
742        delete tsorted;
743      }
744      if (timage) {
745        timage->Delete();
746        delete timage;
747      }
748      if (text) {
749        text->Delete();
750        delete text;
751      }
752      if (tsorted_nuc) {
753        tsorted_nuc->Delete();
754        delete tsorted_nuc;
755      }
756      if (timage_nuc) {
757        timage_nuc->Delete();
758        delete timage_nuc;
759      }
760      if (text_nuc) {
761        text_nuc->Delete();
762        delete text_nuc;
763      }
764    
765    
766    
767      if (dbc) {
768        dbc->Close();
769        delete dbc;
770        dbc=0;
771      }
772    
773      if (gltsync)
774        delete gltsync;
775    
776      if (l0_file)
777        l0_file->Close();
778      //    if(pam_tree)pam_tree->Delete();;
779    
780      if (pam_tree) {
781        //
782        // we have first to find which chains we have to delete, then delete the main chain and only after delete the friend chains. Any other order causes a segfault...
783        //
784        TList *temp = pam_tree->GetListOfFriends();
785        TList *contents = new TList; // create chain friend list
786        contents->SetOwner();
787        TIter next(temp);
788        TChain *questo = 0;
789        while ((questo = (TChain*) next())) {
790          TString name = questo->GetName();
791          contents->Add((TChain*) gROOT->FindObject(name.Data()));// add object to the list
792        };
793        //
794        // deleting the main chain
795        //
796        pam_tree->Delete();
797        //
798        // deleting the friends...
799        //
800        TIter next2(contents);
801        TChain *questa = 0;
802        while ( (questa = (TChain*)next2()) ) {
803          TString name = questa->GetName();
804          questa->Delete();
805          questa = NULL;
806        };
807        //
808      };
809      pam_tree = NULL;
810    
811      if (run_tree)
812        run_tree->Delete();;
813      if (sel_tree)
814        sel_tree->Delete();;
815    
816      // The following lines are commented out since they may generate a double delete error
817      // if the file containing the clone trees is closed. This is because the file owns the
818      // clone trees which are written into it, so it will delete them when it is closed; if
819      // also PamLevel2 will try to delete these trees, a double delete error will be generated
820      // when exiting from analysis program. (Nicola 28/11/2011)
821    
822      /*for (Int_t i = 0; i < NCLONES; i++)
823        if (pam_tree_clone[i])
824          pam_tree_clone[i]->Delete();;
825      if (run_tree_clone)
826        run_tree_clone->Delete();;
827      if (sel_tree_clone)
828        sel_tree_clone->Delete();;*/
829    
830      if (irunoffset)
831        delete[] irunoffset;
832    
833    
834      Initialize();
835    
836    }
837    ;
838    
 //--------------------------------------  
 //  
 //  
 //--------------------------------------  
839  /**  /**
840   * Retrieves the calorimeter track matching the seqno-th tracker stored track.   * Clear the event (NB! does not deallocate objects)
  * (If seqno = -1 retrieves the self-trigger calorimeter track)  
841   */   */
842   CaloTrkVar *PamLevel2::GetCaloStoredTrack(int seqno){  void PamLevel2::Clear() {
843            
844           if( CaloLevel2::ntrk()==0 ){    //    cout << "void PamLevel2::Clear()"<<endl;
845                   cout << "PamLevel2::GetCaloStoredTrack(int) : requested tracker SeqNo "<< seqno <<" but no Calorimeter tracks are stored"<<endl;  
846                   return NULL;    //
847           };    // This method is called once for every entry but RunInfo and SoftInfo do not change until the next run so we cannot clear them here unless we don't
848              // want to load them for each event even if they are the same...
849           CaloTrkVar *c = 0;    //
850           Int_t it_calo=0;    //    if(run_obj)delete run_obj;
851              //    if(run_obj) run_obj->Clear();  // Emiliano: Do not deallocate run_obj here, it will give segmentation fault! call clear instead
852           do{    //    if(soft_obj) soft_obj->Clear();
853                   c = CaloLevel2::GetCaloTrkVar(it_calo);  
854                   it_calo++;    if (h0_obj)
855           } while( seqno != c->trkseqno && it_calo < CaloLevel2::ntrk());              h0_obj->Clear();
856              //    if(trk0_obj) trk0_obj->Clear();
857           if(seqno != c->trkseqno){    if (trk1_obj)
858                   c = 0;      trk1_obj->Clear();
859                   if(seqno!=-1)cout << "PamLevel2::GetCaloStoredTrack(int) : requested tracker SeqNo "<< seqno <<" does not match Calorimeter stored tracks"<<endl;    if (trk2_obj)
860           };      trk2_obj->Clear();
861           return c;    if (trkh_obj)
862        trkh_obj->Clear();
863   };    if (calo0_obj)
864  //--------------------------------------      calo0_obj->Clear();
865   //    if (calo1_obj)
866   //      calo1_obj->Clear();
867  //--------------------------------------    if (calo2_obj)
868  /**      calo2_obj->Clear();
869    * Retrieves the ToF track matching the seqno-th tracker stored track.    if (tof2_obj)
870    * (If seqno = -1 retrieves the tracker-independent tof track)      tof2_obj->Clear();
871   */    if (trig_obj)
872   ToFTrkVar *PamLevel2::GetToFStoredTrack(int seqno){      trig_obj->Clear();
873              if (s4_obj)
874           if( ToFLevel2::ntrk()==0 ){      s4_obj->Clear();
875                   cout << "PamLevel2::GetToFStoredTrack(int) : requested tracker SeqNo "<< seqno <<" but no ToF tracks are stored"<<endl;    if (nd_obj)
876                   return NULL;      nd_obj->Clear();
877           };    if (ac_obj)
878                ac_obj->Clear();
879           ToFTrkVar *c = 0;    if (orb2_obj)
880           Int_t it_tof=0;      orb2_obj->Clear();
881              if (gp_obj)
882           do{      gp_obj->Clear();
883                   c = ToFLevel2::GetToFTrkVar(it_tof);  
884                   it_tof++;    //    if(sorted_tracks)sorted_tracks->Clear();
885           } while( seqno != c->trkseqno && it_tof < ToFLevel2::ntrk());      //    sorted_tracks.Clear();
886            
887           if(seqno != c->trkseqno){    if(trk_nuc_obj)trk_nuc_obj->Clear();
888                   c = 0;    if(trk_ext_obj)trk_ext_obj->Clear();
889                   if(seqno!=-1)cout << "PamLevel2::GetToFStoredTrack(int) : requested tracker SeqNo "<< seqno <<" does not match ToF stored tracks"<<endl;    if(trk_ext_nuc_obj)trk_ext_nuc_obj->Clear();
890           };  
891           return c;    if(calo_nuc_obj)calo_nuc_obj->Clear();
892      if(calo_ext_obj)calo_ext_obj->Clear();
893   };    if(calo_ext_nuc_obj)calo_ext_nuc_obj->Clear();
894    
895  //--------------------------------------    if(tof_nuc_obj)tof_nuc_obj->Clear();
896   //    if(tof_ext_obj)tof_ext_obj->Clear();
897   //    if(tof_ext_nuc_obj)tof_ext_nuc_obj->Clear();
898  //--------------------------------------  
899  /**    if(orb_nuc_obj)orb_nuc_obj->Clear();
900   * Give the pamela track associated to a tracker track, retrieving related calorimeter and tof track information.    if(orb_ext_obj)orb_ext_obj->Clear();
901   */    if(orb_ext_nuc_obj)orb_ext_nuc_obj->Clear();
902   PamTrack* PamLevel2::GetPamTrackAlong(TrkTrack* t){  
903              if(trk2_nuc_obj)trk2_nuc_obj->Clear();;
904           CaloTrkVar *c = 0;    if( calo2_nuc_obj)calo2_nuc_obj->Clear();;
905           ToFTrkVar  *o = 0;    if(tof2_nuc_obj)tof2_nuc_obj->Clear();;
906              if(orb2_nuc_obj)orb2_nuc_obj->Clear();;
907           if(CAL) c = GetCaloStoredTrack(t->GetSeqNo());  
908           if(TOF) o = GetToFStoredTrack(t->GetSeqNo());    if (tsorted)tsorted->Delete();
909              if (timage)timage->Delete();
910  //    if(t && c && o)track = new PamTrack(t,c,o);    if (text) text->Delete();
          PamTrack *track = new PamTrack(t,c,o);  
           
          return track;  
911    
912   };    if (tsorted_nuc)tsorted_nuc->Delete();
913      if (timage_nuc)timage_nuc->Delete();
914      if (text_nuc) text_nuc->Delete();
915    }
916    ;
917    
918    void PamLevel2::Reset() {
919      //
920      // First of all clear everything
921      //
922      Clear();
923      //
924      // close and reset chains and pointers
925      //
926      if (pam_tree) {
927        //
928        // we have first to find which chains we have to delete, then delete the main chain and only after delete the friend chains. Any other order causes a segfault...
929        //
930        TList *temp = pam_tree->GetListOfFriends();
931        TList *contents = new TList; // create chain friend list
932        contents->SetOwner();
933        TIter next(temp);
934        TChain *questo = 0;
935        while ((questo = (TChain*) next())) {
936          TString name = questo->GetName();
937          contents->Add((TChain*) gROOT->FindObject(name.Data()));// add object to the list
938        };
939        //
940        // deleting the main chain
941        //
942        pam_tree->Delete();
943        //
944        // deleting the friends...
945        //
946        TIter next2(contents);
947        TChain *questa = 0;
948        while ( (questa = (TChain*) next2()) ) {
949          TString name = questa->GetName();
950          questa->Delete();
951          questa = NULL;
952        };
953        //
954      };
955      pam_tree = NULL;
956      //
957      if (run_tree)
958        run_tree->Delete();;
959      run_tree = NULL;
960      if (sel_tree)
961        sel_tree->Delete();;
962      sel_tree = NULL;
963      //
964      // Close file
965      //
966      if (l0_file)
967        l0_file->Close("R");
968      l0_file = NULL;
969      //
970      h0_obj = 0;
971      trk0_obj = 0;
972      calo0_obj = 0;
973      //
974      trk2_obj = 0;
975      trk1_obj = 0;
976      trkh_obj = 0;
977      calo1_obj = 0;
978      calo2_obj = 0;
979      tof2_obj = 0;
980      trig_obj = 0;
981      s4_obj = 0;
982      nd_obj = 0;
983      ac_obj = 0;
984      orb2_obj = 0;
985      gp_obj = 0;
986    
987      trk_ext_obj     = 0;
988      trk_ext_nuc_obj = 0;
989      trk_nuc_obj     = 0;
990      
991      calo_ext_obj     = 0;
992      calo_ext_nuc_obj = 0;
993      calo_nuc_obj     = 0;
994      
995      tof_ext_obj     = 0;
996      tof_ext_nuc_obj = 0;
997      tof_nuc_obj     = 0;
998      
999      orb_ext_obj     = 0;
1000      orb_ext_nuc_obj = 0;
1001      orb_nuc_obj     = 0;
1002    
1003      trk2_nuc_obj  = 0;
1004      calo2_nuc_obj = 0;
1005      tof2_nuc_obj  = 0;
1006      orb2_nuc_obj  = 0;
1007    
1008      trk2_nuc_obj  = 0;
1009      calo2_nuc_obj = 0;
1010      tof2_nuc_obj  = 0;
1011      orb2_nuc_obj  = 0;
1012      //
1013      // Reset run pointers
1014      //
1015      run_obj = 0;//new GL_RUN();
1016      soft_obj = 0;// Emiliano
1017      irun = -1;
1018      irunt = -1;
1019      totrunentry = 0LL;
1020      totrunentrymax = 0LL;
1021      totrunentrymin = 0LL;
1022      runfirstentry = 0ULL;
1023      runlastentry = 0ULL;
1024      prevabstime = 0ULL;
1025      prevpktnum = 0;
1026      abstime = 0ULL;
1027      pktnum = 0;
1028      isFragment = false;
1029      //
1030      totdltime[0] = 0LL;
1031      totdltime[1] = 0LL;
1032      totdltime[2] = 0LL;
1033      //
1034    }
1035    ;
1036    
1037    Bool_t PamLevel2::IsGood(Bool_t strict) {
1038      Bool_t goodev = true;
1039      //
1040      if (calo2_obj && !calo2_obj->IsGood(strict))
1041        goodev = false;
1042      //
1043      if (strict) {
1044        if (trk2_obj && trk2_obj->UnpackError() != 0)
1045          goodev = false;
1046        if (tof2_obj && tof2_obj->unpackError != 0)
1047          goodev = false;
1048        if (trig_obj && trig_obj->unpackError != 0)
1049          goodev = false;
1050        if (s4_obj && s4_obj->unpackError != 0)
1051          goodev = false;
1052        if (nd_obj && nd_obj->unpackError != 0)
1053          goodev = false;
1054        if (ac_obj && (ac_obj->unpackError != 0 || ((ac_obj->status[0] >> 2) & 1) || ((ac_obj->status[1] >> 2) & 1)))
1055          goodev = false;
1056        //  if(orb2_obj)
1057      }
1058      else {
1059        if (nd_obj && nd_obj->unpackError != 0)
1060          goodev = false;
1061        if (ac_obj && (ac_obj->unpackError != 0 || ((ac_obj->status[0] >> 2) & 1) || ((ac_obj->status[1] >> 2) & 1)))
1062          goodev = false;
1063      };
1064      return (goodev);
1065    }
1066    ;
1067    
1068    void PamLevel2::SkipRunInfoUpdate(){
1069      printf("\n\n ******** WARNING ******** \n Skip DB connections, DO NOT USE PamLevel2::GetRunInfo() method! \n\n");
1070      fUpdateRunInfo = false;
1071      this->SetSELLI(2);
1072      printf(" ===============> W A R N I N G <================ \n");
1073      printf(" in case PamLevel2::CreateCloneTrees() will be called \n");
1074      printf(" it will be reverted to PadmeAmidala level2 structure , i.e. NO SELECTIONLIST WILL BE CREATED IN THE NEW LEVEL2 FILE! \n\n");
1075      if ( run_tree_clone ){
1076        printf(" ===============> W A R N I N G <================ \n");
1077        printf(" PamLevel2::SkipRunIndoUpdate or PamLevel2::NoDBconnections() has been called together with PamLevel2::CreateCloneTrees() \n");
1078        printf(" TO AVOID CRASHES call PamLevel2::CreateCloneTrees() after PamLevel2::SkipRunIndoUpdate or PamLevel2::NoDBconnections() \n");    
1079      };
1080    }
1081    
1082    void PamLevel2::SetMaxShift(Int_t sh){
1083      if ( sh >=  0 ){
1084        printf("PamLevel2::SetMaxShift(Int_t) --WARNING-- the default is optimized by checking the level2 file\n it is strongly suggested to let PamLevel2 choose the max shift!\n");
1085        maxshift = sh;
1086      } else {
1087        ULong64_t nev = GetEntries();
1088        ULong64_t runnev = 0ULL;
1089        for (Int_t r=0; r< run_tree->GetEntries();r++){
1090          run_tree->GetEntry(r);//update runinfo
1091          runnev += GetRunInfo()->NEVENTS;
1092        }
1093        maxshift = (Int_t)(runnev-nev) + 10; // +10 just to be conservative
1094        if ( (runnev-nev) == 0 ) isSync = true;
1095        if (DBG) printf("PamLevel2::SetMaxShift(Int_t_) - sh negative %i - nev is %lld runnnev is %lld so maxshift set to %i \n",sh,nev,runnev,maxshift);
1096        //    printf("PamLevel2::SetMaxShift(Int_t_) - sh negative %i - nev is %lld runnnev is %lld so maxshift set to %i \n",sh,nev,runnev,maxshift); // TOGLITOGLI
1097      }
1098    }
1099    
1100  //--------------------------------------  //--------------------------------------
1101  //  //
1102  //  //
1103  //--------------------------------------  //--------------------------------------
1104  /**  void *PamLevel2::GetPointerTo(const char* c) {
  * Retrieves the it-th stored track.  
  * It override TrkLevel2::GetTrack(int it).  
  * @param itrk Track number, ranging from 0 to GetNTracks().  
  */  
1105    
1106  PamTrack* PamLevel2::GetStoredTrack(Int_t itrk){    TString objname = c;
       
         PamTrack *track = 0;  
1107    
1108          if( itrk >=0 && itrk < TrkLevel2::ntrk() ){    if (!objname.CompareTo("TrkLevel1")) {
1109                        if (!trk1_obj) {
1110                  TrkTrack *t = TrkLevel2::GetStoredTrack(itrk);        trk1_obj = new TrkLevel1();
1111                  track = GetPamTrackAlong(t);        trk1_obj->Set();
1112                }
1113          }else{      return &trk1_obj;
1114                  cout << "PamLevel2::GetStoredTrack(int) : tracker track SeqNo "<< itrk <<" does not exist (GetNTracks() = "<<TrkLevel2::GetNTracks()<<")"<<endl;    };
1115          };    if (!objname.CompareTo("TrkLevel2")) {
1116        if (!trk2_obj) {
1117          trk2_obj = new TrkLevel2();
1118          trk2_obj->Set();
1119        }
1120        return &trk2_obj;
1121      };
1122      if (!objname.CompareTo("TrkHough")) {
1123        if (!trkh_obj) {
1124          trkh_obj = new TrkHough();
1125          trkh_obj->Set();
1126        }
1127        return &trkh_obj;
1128      };
1129      if (!objname.CompareTo("CaloLevel1")) {
1130        if (!calo1_obj)
1131          calo1_obj = new CaloLevel1();
1132        return &calo1_obj;
1133      };
1134      if (!objname.CompareTo("CaloLevel2")) {
1135        if (!calo2_obj) {
1136          calo2_obj = new CaloLevel2();
1137          calo2_obj->Set();
1138        };
1139        return &calo2_obj;
1140      };
1141      if (!objname.CompareTo("ToFLevel2")) {
1142        if (!tof2_obj) {
1143          tof2_obj = new ToFLevel2();
1144          tof2_obj->Set();
1145        }
1146        return &tof2_obj;
1147      };
1148      if (!objname.CompareTo("TrigLevel2")) {
1149        if (!trig_obj)
1150          trig_obj = new TrigLevel2();
1151        return &trig_obj;
1152      };
1153      if (!objname.CompareTo("S4Level2")) {
1154        if (!s4_obj)
1155          s4_obj = new S4Level2();
1156        return &s4_obj;
1157      };
1158      if (!objname.CompareTo("NDLevel2")) {
1159        if (!nd_obj)
1160          nd_obj = new NDLevel2();
1161        return &nd_obj;
1162      };
1163      if (!objname.CompareTo("AcLevel2")) {
1164        if (!ac_obj)
1165          ac_obj = new AcLevel2();
1166        return &ac_obj;
1167      };
1168      if (!objname.CompareTo("OrbitalInfo")) {
1169        if (!orb2_obj) {
1170          orb2_obj = new OrbitalInfo();
1171          orb2_obj->Set();
1172        }
1173        return &orb2_obj;
1174      };
1175      //     if(!objname.CompareTo("OrbitalInfo")){
1176      //    if(!orb2_obj)   orb2_obj   = new OrbitalInfo();
1177      //    return &orb2_obj;
1178      //     };
1179      if (!objname.CompareTo("GPamela")) {
1180        if (!gp_obj)
1181          gp_obj = new GPamela();
1182        return &gp_obj;
1183      };
1184    
1185          return track;    if (!objname.CompareTo("RunInfo"))
1186                return &run_obj;
1187    
1188      if (!objname.CompareTo("SoftInfo"))
1189        return &soft_obj; // Emiliano
1190    
1191      return NULL;
1192  }  }
1193    ;
1194  //--------------------------------------  //--------------------------------------
1195  //  //
1196  //  //
1197  //--------------------------------------  //--------------------------------------
1198  /**  /**
1199   * Sort physical (tracker) tracks and stores them in the TRefArray (of TrkTrack objects) which pointer is  PamLevel2::sorted_tracks.   * Retrieves the calorimeter track matching the seqno-th tracker stored track.
1200   * @param how String to set the sorting cryterium (es: "CAL" or "TRK+CAL+TOF" ecc...).   * (If seqno = -1 retrieves the self-trigger calorimeter track)
  * Sorting cryteria:  
  * TRK: lower chi**2  
  * CAL: lower Y spatial residual on the first calorimeter plane  
  * TOF: bigger numebr of hit PMTs along the track, on S12 S21 S32 (where paddles are along the Y axis).  
  * The default sorting cryterium is "TOF+CAL".  
  *  
  * The total number of physical tracks is always given by GetNTracks() and the it-th physical track can be retrieved by means of the methods GetTrack(int it) and GetTrack(int it, TString how).  
1201   */   */
1202  void PamLevel2::SortTracks(TString how){  CaloTrkVar *PamLevel2::GetCaloStoredTrack(int seqno) {
1203    
1204    //Save current Object count    if (!calo2_obj)
1205          Int_t ObjectNumber = TProcessID::GetObjectCount();      return 0;
           
         sorted_tracks->Delete(); //temporaneo???  
           
     // loop over the tracks sorted by the tracker  
         Bool_t use_TRK = how.Contains("TRK", TString::kIgnoreCase);  
         Bool_t use_CAL = how.Contains("CAL", TString::kIgnoreCase);  
         Bool_t use_TOF = how.Contains("TOF", TString::kIgnoreCase);  
           
         if( !CAL &&  use_CAL) use_CAL = false;  
         if( !TOF &&  use_TOF) use_TOF = false;  
           
         if( !TRK ){  
                 cout << "SortTracks() : without tracker does not work!!! (not yet)" << endl;  
                 return;  
         };  
           
         for(Int_t i=0; i < TrkLevel2::GetNTracks(); i++){  
1206    
1207                  TrkTrack *ts = 0;    if (calo2_obj->CaloLevel2::ntrk() == 0) {
1208        cout << "PamLevel2::GetCaloStoredTrack(int) : requested tracker SeqNo " << seqno
1209            << " but no Calorimeter tracks are stored" << endl;
1210        return NULL;
1211      };
1212    
1213          // get tracker tracks    CaloTrkVar *c = 0;
1214                  TrkTrack   *tp = TrkLevel2::GetTrack(i);                    //tracker    Int_t it_calo = 0;
 //              CaloTrkVar *cp = GetCaloStoredTrack(tp->GetSeqNo());  
 //              ToFTrkVar  *op = GetToFStoredTrack(tp->GetSeqNo());  
                 CaloTrkVar *cp = 0;  
                 ToFTrkVar  *op = 0;  
   
         // if track has an image, check image selection  
                 if(tp->HasImage()){  
                           
                         TrkTrack   *ti = TrkLevel2::GetTrackImage(i);              //tracker (image)  
 //                      CaloTrkVar *ci = GetCaloStoredTrack(ti->GetSeqNo());  
 //                      ToFTrkVar  *oi = GetToFStoredTrack(ti->GetSeqNo());  
                         CaloTrkVar *ci = 0;  
                         ToFTrkVar  *oi = 0;  
   
             //assign starting scores  
                         Int_t tp_score = 0;  //main track sorted by the tracker  
                         Int_t ti_score = 0;  //image track  
                                                   
             // ------------------------  
             // calorimeter check  
             // ------------------------  
                 // check the Y spatial residual on the first calorimeter plane  
                 // (cut on calorimeter variables from Emiliano)  
                         if(  
                                 use_CAL            &&  
                                 npcfit[1] > 15     &&   //no. of fit planes on Y view  
                                 varcfit[1] < 1000. &&  //fit variance on Y view  
                                 true){  
   
                                 cp = GetCaloStoredTrack(tp->GetSeqNo());  
                                 ci = GetCaloStoredTrack(ti->GetSeqNo());  
                                   
                                 Float_t resy_p = cp->tbar[0][1] - cbar[0][1]; if(resy_p < 0)resy_p= - resy_p;  
                                 Float_t resy_i = ci->tbar[0][1] - cbar[0][1]; if(resy_i < 0)resy_i= - resy_i;  
   
                                 if(resy_p <= resy_i) tp_score++;  
                                 else                 ti_score++;  
                         };  
             // ------------------------  
             // TOF check  
             // ------------------------      
                 // check the number of hit pmts along the track  
                 // on S12 S21 and S32, where paddles are parallel to Y axis  
                         if( use_TOF ){  
                           
                                 Int_t nphit_p =0;  
                                 Int_t nphit_i =0;  
                                           
                                 op = GetToFStoredTrack(tp->GetSeqNo());  
                                 oi = GetToFStoredTrack(ti->GetSeqNo());  
                                   
 /*                              cout << "track: npmtadc "<< op->npmtadc << endl;  
                                 cout << "track: npmttdc "<< op->npmttdc << endl;  
                                 cout << "image: npmtadc "<< oi->npmtadc << endl;  
                                 cout << "image: npmttdc "<< oi->npmttdc << endl;*/  
                                   
                                 for (Int_t ih=0; ih < op->npmtadc; ih++){  
                                         Int_t pl = GetPlaneIndex( (op->pmtadc).At(ih) );  
                                         if(pl == 1 || pl == 2 || pl == 5)nphit_p++;  
                                 };  
                                                           
                                 for (Int_t ih=0; ih < oi->npmtadc; ih++){  
                                         Int_t pl = GetPlaneIndex( (oi->pmtadc).At(ih) );  
                                         if(pl == 1 || pl == 2 || pl == 5)nphit_i++;      
                                 };  
                                   
                                 if(  
                                         use_TOF            &&  
                                         (nphit_p+nphit_i) !=0 &&          
                                         true){  
                                           
                                         if( nphit_p >= nphit_i) tp_score++;  
                                         else                                              ti_score++;  
                                 };  
                         };  
                         if(tp_score == ti_score) use_TRK = true;  
                 // ------------------------  
             // tracker check  
             // ------------------------  
                 // chi**2 difference is not always large enough to distinguish among  
                 // the real track and its image.  
                 // Tracker check will be applied always when calorimeter and tof information is ambiguous.  
                         if(use_TRK){  
                                 if(      tp->chi2 > 0 && tp->chi2 < ti->chi2 ) tp_score++ ;  
                                 else if( ti->chi2 > 0 && ti->chi2 < tp->chi2 ) ti_score++ ;  
                         };  
   
             // ------------------------  
             // the winner is....  
             // ------------------------      
                         if      (tp_score > ti_score) ts = tp;//the track sorted by the tracker!!  
                         else if (tp_score < ti_score) ts = ti;//its image!!  
                         else {  
                                 ts = tp;  
 //                              cout << "Warning - track image ambiguity not solved" << endl;  
 //                              cout << ts->GetNtot() << " "<< ts->chi2 << " " << npcfit[1] << " "<< nphit_p << endl;  
                         };  
1215    
1216                  }else{    do {
1217                          ts = tp;      c = calo2_obj->CaloLevel2::GetCaloTrkVar(it_calo);
1218                  };      it_calo++;
1219                      } while (c && seqno != c->trkseqno && it_calo < calo2_obj->CaloLevel2::ntrk());
 //              cout <<" SortTracks() "<<i<<" -- "<<ts<<endl;  
                 sorted_tracks->Add(ts);//save the track in the sorted array  
 //              cout << "SortTracks:: sorted_tracks->Add(it) "<<i<<" "<<ts<<endl;  
                   
         };  
   //Restore Object count  
   //To save space in the table keeping track of all referenced objects  
   //we assume that our events do not address each other. We reset the  
   //object count to what it was at the beginning of the event.  
         TProcessID::SetObjectCount(ObjectNumber);  
1220    
1221  };    if (!c || seqno != c->trkseqno) {
1222        c = 0;
1223        if (seqno != -1)
1224          cout << "PamLevel2::GetCaloStoredTrack(int) : requested tracker SeqNo " << seqno
1225              << " does not match Calorimeter stored tracks" << endl;
1226      };
1227      return c;
1228    
1229    }
1230    ;
1231  //--------------------------------------  //--------------------------------------
1232  //  //
1233  //  //
1234  //--------------------------------------  //--------------------------------------
1235  /**  /**
1236   * This method overrides TrkLevel2::GetTracks(), where sorting is done by decreasing number of fit points and increasing chi^2.   * Retrieves the ToF track matching the seqno-th tracker stored track.
1237   * PamLevel2::GetTracks() keeps the same track order given by TrkLevel2::GetTracks(), but checks image selection by using calorimeter and ToF tracking information.   * (If seqno = -1 retrieves the tracker-independent tof track)
1238   */   */
1239   TRefArray *PamLevel2::GetTracks(){  ToFTrkVar *PamLevel2::GetToFStoredTrack(int seqno) {
1240           //  
1241  //      SortTracks("+CAL+TOF");    if (!tof2_obj)
1242           SortTracks("+CAL+TRK");//TEMP!!!!!!!!!!!!!      return 0;
1243          //  
1244          return sorted_tracks;    if (tof2_obj->ToFLevel2::ntrk() == 0) {
1245   };      cout << "PamLevel2::GetToFStoredTrack(int) : requested tracker SeqNo " << seqno << " but no ToF tracks are stored"
1246            << endl;
1247        return NULL;
1248      };
1249    
1250      ToFTrkVar *c = 0;
1251      Int_t it_tof = 0;
1252    
1253      do {
1254        c = tof2_obj->ToFLevel2::GetToFTrkVar(it_tof);
1255        it_tof++;
1256      } while (c && seqno != c->trkseqno && it_tof < tof2_obj->ToFLevel2::ntrk());
1257    
1258      if (!c || seqno != c->trkseqno) {
1259        c = 0;
1260        if (seqno != -1)
1261          cout << "PamLevel2::GetToFStoredTrack(int) : requested tracker SeqNo " << seqno
1262              << " does not match ToF stored tracks" << endl;
1263      };
1264      return c;
1265    
1266    }
1267    ;
1268    
1269  //--------------------------------------  //--------------------------------------
1270   //  //
1271   //  //
1272  //--------------------------------------  //--------------------------------------
1273  /**  /**
1274   * Retrieves the it-th Pamela "physical" track.   * Retrieves the OrbitalInfo track matching the seqno-th tracker stored track.
1275   * It override TrkLevel2::GetTrack(int it).   * (If seqno = -1 retrieves the tracker-independent tof related track)
  * @param it Track number, ranging from 0 to GetNTracks().  
1276   */   */
1277  PamTrack *PamLevel2::GetTrack(int it){  OrbitalInfoTrkVar *PamLevel2::GetOrbitalInfoStoredTrack(int seqno) {
           
 //  *-*-*-*-*-*-*  
 //      SortTracks("+CAL+TOF");  
         SortTracks("+CAL+TRK");//TEMP!!!!!!!!!!!!!  
 //  *-*-*-*-*-*-*  
1278    
1279          PamTrack *track = 0;    if (!orb2_obj)
1280                return 0;
         if( it >=0 && it < TrkLevel2::GetNTracks() ){  
                 TrkTrack   *t = (TrkTrack*)sorted_tracks->At(it);  
 //              cout << "GetTrack(int it):: sorted_tracks->At(it) "<<it<<" "<<t<<endl;  
                 track = GetPamTrackAlong(t);  
         }else{  
                 cout << "PamLevel2::GetTrack(int) : tracker track SeqNo "<< it <<" does not exist (GetNTracks() = "<<TrkLevel2::GetNTracks()<<")"<<endl;  
         };  
           
         return track;  
1281    
1282  };    if (orb2_obj->OrbitalInfo::ntrk() == 0) {
1283        //       // TRICK BEGIN
1284        //       OrbitalInfoTrkVar  *r = new OrbitalInfoTrkVar(); // TEMPORARY TRICK
1285        //       Int_t nn = 0;
1286        //       TClonesArray &tor = *orb2_obj->OrbitalInfoTrk;
1287        //       for(Int_t nt=0; nt < tof2_obj->ToFLevel2::ntrk(); nt++){
1288        //  //
1289        //  ToFTrkVar *ptt = tof2_obj->ToFLevel2::GetToFTrkVar(nt);
1290        //  if ( ptt->trkseqno != -1  ){
1291        //    //
1292        //    r->trkseqno = ptt->trkseqno;
1293        //    //
1294        //    r->Eij = 0;
1295        //    //
1296        //    r->Sij = 0;
1297        //    //
1298        //    r->pitch = -1000.;
1299        //    //
1300        //    r->cutoff = -1000.;
1301        //    //
1302        //    new(tor[nn]) OrbitalInfoTrkVar(*r);
1303        //    nn++;
1304        //    //
1305        //    r->Clear();
1306        //    //
1307        //  };
1308        //       };
1309        //       delete r;
1310        //       OrbitalInfoTrkVar *c = 0;
1311        //       c = orb2_obj->OrbitalInfo::GetOrbitalInfoTrkVar(0);
1312        //       return c;
1313        //       //TRICK END
1314        cout << "PamLevel2::GetOrbitalInfoStoredTrack(int) : requested tracker SeqNo " << seqno
1315            << " but no OrbitalInfo tracks are stored" << endl;
1316        return NULL;
1317      };
1318    
1319      OrbitalInfoTrkVar *c = 0;
1320      Int_t it_tof = 0;
1321    
1322      do {
1323        c = orb2_obj->OrbitalInfo::GetOrbitalInfoTrkVar(it_tof);
1324        it_tof++;
1325      } while (c && seqno != c->trkseqno && it_tof < orb2_obj->OrbitalInfo::ntrk());
1326    
1327      if (!c || seqno != c->trkseqno) {
1328        c = 0;
1329        if (seqno != -1)
1330          cout << "PamLevel2::GetOrbitalInfoStoredTrack(int) : requested tracker SeqNo " << seqno
1331              << " does not match OrbitalInfo stored tracks" << endl;
1332      };
1333      return c;
1334    
1335    }
1336    ;
1337    
1338  //--------------------------------------  //--------------------------------------
1339  //  //
1340  //  //
1341  //--------------------------------------  //--------------------------------------
1342  /**  /**
1343   * Retrieves (if present) the image of the it-th Pamela "physical" track, sorted by the method PamLevel2::SortTracks().   * Give the pamela track associated to a tracker track, retrieving related calorimeter, orbitalinfo and tof track information.
  * @param it Track number, ranging from 0 to GetNTracks().  
1344   */   */
1345  PamTrack *PamLevel2::GetTrackImage(int it){  PamTrack* PamLevel2::GetPamTrackAlong(TrkTrack* t) {
1346    
1347  //      SortTracks("+CAL+TOF");    cout << "PamLevel2::GetPamTrackAlong(TrkTrack* t) **obsolete** " << endl;
1348          SortTracks("+CAL+TRK");//TEMP!!!!!!!!!!!!!    cout << "(if you use it, remember to delete the PamTrack object)" << endl;
           
         PamTrack *image = 0;  
1349    
1350          if( it >=0 && it < TrkLevel2::GetNTracks() ){    CaloTrkVar *c = 0;
1351                  TrkTrack *temp = (TrkTrack*)sorted_tracks->At(it);    ToFTrkVar *o = 0;
1352                  if( temp->HasImage() ){    OrbitalInfoTrkVar *r = 0;
1353                          TrkTrack   *t = TrkLevel2::GetStoredTrack(temp->GetImageSeqNo());  
1354                          image = GetPamTrackAlong(t);    if (CAL2)
1355                  }else{      c = GetCaloStoredTrack(t->GetSeqNo());
1356                          cout <<"PamLevel2::GetTrackImage(int) : Track SeqNo "<<it<<" does not have image"<<endl;    if (TOF)
1357                  };      o = GetToFStoredTrack(t->GetSeqNo());
1358          }else{    if (ORB)
1359                  cout << "PamLevel2::GetTrackImage(int) : Tracker track SeqNo "<< it <<" does not exist (GetNTracks() = "<<TrkLevel2::GetNTracks()<<")"<<endl;      r = GetOrbitalInfoStoredTrack(t->GetSeqNo());
1360          };  
1361          //    if(t && c && o)track = new PamTrack(t,c,o);
1362          return image;    PamTrack *track = new PamTrack(t, c, o, r);
1363  }  
1364      return track;
1365    
1366    }
1367    ;
1368  //--------------------------------------  //--------------------------------------
1369  //  //
1370  //  //
1371  //--------------------------------------  //--------------------------------------
1372  /**  /**
1373   * Get the Pamela detector trees in a single file and make them friends.   * Retrieves the it-th stored track.
1374   * @param f TFile pointer   * It override TrkLevel2::GetTrack(int it).
1375   * @param detlist String to select trees to be included   * @param itrk Track number, ranging from 0 to GetNTracks().
  * @return Pointer to a TTree  
1376   */   */
 TTree *PamLevel2::GetPamTree(TFile *f, TString detlist="+ALL"){  
1377    
1378  //      cout << "WARNING!!! -- obsolete method -- \n";  PamTrack* PamLevel2::GetStoredTrack(Int_t itrk) {
1379  //      cout << "better use TChain *PamLevel2::GetPamTree(TList*, TString) \n";  
1380              cout << "PamLevel2::GetStoredTrack(Int_t itrk) **to-be-updated** " << endl;
1381          TTree *Trout =0;    cout
1382                  << "for the moment, better use separately the methods: TrkLevel2::GetStoredTrack(seqno) CaloLevel2::GetCaloTrkVar(Int_t notrack) ToFLevel2::GetToFTrkVar(Int_t notrack) OrbitalInfo::GetOrbitalInfoTrkVar(Int_t notrack)"
1383          SetWhichTrees(detlist);        << endl;
1384  // Tracker    cout << "(if you use it, remember to delete the PamTrack object)" << endl;
1385      TTree *T = (TTree*)f->Get("Tracker");    PamTrack *track = 0;
1386      if(T && TRK) {  
1387                  if(TRK_L1){    if (itrk >= 0 && itrk < trk2_obj->TrkLevel2::ntrk()) {
1388                          T->SetBranchAddress("TrkLevel1", GetPointerToTrk(1));  
1389                          cout << "Tracker      : set branch address TrkLevel1"<<endl;      TrkTrack *t = trk2_obj->TrkLevel2::GetStoredTrack(itrk);
1390                  };      track = GetPamTrackAlong(t);
1391                  T->SetBranchAddress("TrkLevel2", GetPointerToTrk(2));  
1392                  cout << "Tracker      : set branch address TrkLevel2"<<endl;    }
1393                  Trout=T;    else {
1394      }else{      cout << "PamLevel2::GetStoredTrack(int) : tracker track SeqNo " << itrk << " does not exist (GetNTracks() = "
1395          cout << "Tracker      : missing tree"<<endl;          << trk2_obj->TrkLevel2::GetNTracks() << ")" << endl;
1396      };    };
1397      // Calorimeter  
1398      TTree *C = (TTree*)f->Get("Calorimeter");    return track;
1399      if(C && CAL) {  
         C->SetBranchAddress("CaloLevel2", GetPointerToCalo());  
         cout << "Calorimeter  : set branch address CaloLevel2"<<endl;  
         if(!Trout)Trout=C;  
         else Trout->AddFriend(C);  
     }else{  
         cout << "Calorimeter  : missing tree"<<endl;  
     };  
     // ToF      
     TTree *O = (TTree*)f->Get("ToF");  
     if(O && TOF) {  
         O->SetBranchAddress("ToFLevel2", GetPointerToToF());  
         cout << "ToF          : set branch address ToFLevel2"<<endl;  
         if(!Trout)Trout=O;  
         else Trout->AddFriend(O);  
     }else{  
         cout << "ToF         : missing tree"<<endl;  
     };  
     // Trigger  
     TTree *R = (TTree*)f->Get("Trigger");  
     if(R && TRG) {  
         R->SetBranchAddress("TrigLevel2", GetPointerToTrig());  
         cout << "Trigger      : set branch address TrigLevel2"<<endl;  
         if(!Trout)Trout=O;  
         else Trout->AddFriend(R);  
     }else{  
         cout << "Trigger      : missing tree"<<endl;  
     };  
     // S4  
     TTree *S = (TTree*)f->Get("S4");  
     if(S && S4) {  
         S->SetBranchAddress("S4Level2", GetPointerToS4());  
         cout << "S4           : set branch address S4Level2"<<endl;  
         if(!Trout)Trout=O;  
         else Trout->AddFriend(S);  
     }else{  
         cout << "S4           : missing tree"<<endl;  
     };  
     // Neutron Detector  
     TTree *N = (TTree*)f->Get("NeutronD");  
     if(N && ND) {  
         N->SetBranchAddress("NDLevel2", GetPointerToND());  
         cout << "NeutronD     : set branch address NDLevel2"<<endl;  
         if(!Trout)Trout=O;  
         else Trout->AddFriend(N);  
     }else{  
         cout << "NeutronD     : missing tree"<<endl;  
     };  
     // Anticounters  
     TTree *A = (TTree*)f->Get("Anticounter");  
     if(A && AC) {  
         A->SetBranchAddress("AcLevel2", GetPointerToAc());  
         cout << "Anticounter  : set branch address AcLevel2"<<endl;  
         if(!Trout)Trout=O;  
         else Trout->AddFriend(A);  
     }else{  
         cout << "Anticounter  : missing tree"<<endl;  
     };  
     // Orbital Info  
         TTree *B = (TTree*)f->Get("OrbitalInfo");  
         if(B && ORB) {  
                 B->SetBranchAddress("OrbitalInfo", GetPointerToOrb());  
                 cout << "OrbitalInfo  : set branch address OrbitalInfo"<<endl;  
                 if(!Trout)Trout=O;  
                 else Trout->AddFriend(B);  
         }else{  
                 cout << "OrbitalInfo  : missing tree"<<endl;  
         };  
       
         cout<<endl<<" Number of entries: "<<Trout->GetEntries()<<endl<<endl;  
           
         return Trout;  
       
1400  }  }
1401  //--------------------------------------  //--------------------------------------
1402  //  //
1403    
1404    /**
1405     * Sort physical (tracker) tracks. Left here as backward compatibility method.
1406     **/
1407    void PamLevel2::SortTracks(TString how) {
1408      printf(
1409          " WARNING! obsolete, use SortTracks() and SetSortingMethod(TString) instead! \n Setting sorting method to %s \n",
1410          how.Data());
1411      howtosort = how;
1412      SortTracks();
1413    }
1414    ;
1415    
1416  //  //
1417  //--------------------------------------  //--------------------------------------
1418  /**  /**
1419   * Get list of Level2 files.   * Sort physical (tracker) tracks.
1420   * @param ddir Level2 data directory.   * @param how String to set the sorting cryterium (es: "CAL" or "TRK+CAL+TOF" ecc...).
1421   * @param flisttxt Name of txt file containing file list.   * Sorting cryteria:
1422   * @return Pointer to a TList of TSystemFiles   * TRK: lower chi**2
1423   * If no input file list is given , all the Level2 files inside the directory are processed.   * CAL: lower Y spatial residual on the first calorimeter plane
1424     * TOF: bigger numebr of hit PMTs along the track, on S12 S21 S32 (where paddles are along the Y axis).
1425     * S1: (ask Emiliano)
1426     * S2: (ask Emiliano)
1427     * S3: (ask Emiliano)
1428     * GP: more GP hits
1429     * The default sorting cryterium is "TOF+CAL".
1430     *
1431     * The total number of physical tracks is always given by GetNTracks() and the it-th physical track can be retrieved by means of the methods GetTrack(int it) and GetTrack(int it, TString how).
1432   */   */
1433  TList*  PamLevel2::GetListOfLevel2Files(TString ddir, TString flisttxt = ""){  void PamLevel2::SortTracks() {
1434            
1435          TString wdir = gSystem->WorkingDirectory();        //Check if the current event has already been sorted
1436              if (issorted && lastsorted == GetReadEntry()) {
1437          if(ddir=="")ddir = wdir;      return;
1438  //      TSystemDirectory *datadir = new TSystemDirectory(gSystem->BaseName(ddir),ddir);    }
1439          cout << "Level2 data directory : "<<  ddir << endl;    //Reset the sort flags, just in case something will go wrong...
1440                      issorted = false;
1441          TList *contents  = new TList; // create output list    lastsorted = -1;
1442          contents->SetOwner();  
1443              TString how = howtosort;
1444          char *fullpath;  
1445                      //  cout <<" PamLevel2::SortTracks(TString how) "<<endl;
1446          // if no input file list is given:          if (!trk2_obj) {
1447          if ( flisttxt != "" ){      cout << "void PamLevel2::SortTracks():  TrkLevel2 not loaded !!!";
1448                                        return;
1449                  if( !gSystem->IsFileInIncludePath(flisttxt,&fullpath) )return 0;    };
1450                      //Save current Object count
1451  //              flisttxt = gSystem->ConcatFileName(gSystem->DirName(flisttxt),gSystem->BaseName(flisttxt));    Int_t ObjectNumber = TProcessID::GetObjectCount();
1452                  flisttxt = fullpath;  
1453                      // create TCloneArrays to store tracks and its images
1454                  if( !gSystem->ChangeDirectory(ddir) )return 0;    if (!tsorted)
1455                tsorted = new TClonesArray("PamTrack", trk2_obj->GetNTracks());
1456                  cout <<"Input file list : " << flisttxt <<endl;    tsorted->Clear("C+C");//Delete();
1457                  ifstream in;    TClonesArray &ttsorted = *tsorted;
1458                  in.open(flisttxt, ios::in); //open input file list  
1459                  while (1) {    if (!timage)
1460                          TString file;      timage = new TClonesArray("PamTrack", trk2_obj->GetNTracks());
1461                          in >> file;    timage->Clear("C+C");//Delete();
1462                          if (!in.good()) break;    TClonesArray &ttimage = *timage;
1463                          if( gSystem->IsFileInIncludePath(file,&fullpath) ){  
1464  //                              contents->Add(new TSystemDirectory(fullpath,ddir)); // add file to the list  
1465  //                              contents->Add(new TSystemFile(fullpath,ddir)); // add file to the list  
1466                                  contents->Add(new TSystemFile(fullpath,gSystem->DirName(fullpath)));// add file to the list    //--------------------------------------------------
1467                          }else{    // retrieve sorting method
1468                                  cout << "warning! --- File "<<file<<" does not exists"<< endl;    //--------------------------------------------------
1469                          };    Bool_t use_TRK = how.Contains("TRK", TString::kIgnoreCase);
1470                  };    Bool_t use_CAL = how.Contains("CAL", TString::kIgnoreCase);
1471                  in.close();    Bool_t use_TOF = how.Contains("TOF", TString::kIgnoreCase);
1472                      Bool_t use_S1 = how.Contains("S1", TString::kIgnoreCase);
1473      Bool_t use_S2 = how.Contains("S2", TString::kIgnoreCase);
1474      Bool_t use_S3 = how.Contains("S3", TString::kIgnoreCase);
1475      Bool_t use_GP = how.Contains("GP", TString::kIgnoreCase);
1476    
1477      if (use_TOF) {
1478        use_S1 = true;
1479        use_S2 = true;
1480        use_S3 = true;
1481      };
1482      if (!CAL2 && use_CAL)
1483        use_CAL = false;
1484      if (!TOF) {
1485        use_TOF = false;
1486        use_S1 = false;
1487        use_S2 = false;
1488        use_S3 = false;
1489      }
1490      if (!GP) {
1491        use_GP = false;
1492      }
1493    
1494      if (!TRK2) {
1495        cout << "SortTracks() : without tracker does not work!!! (not yet)" << endl;
1496        return;
1497      };
1498    
1499      //   cout << "use_CAL "<<use_CAL<<" use_TOF "<<use_TOF<<" use_TRK "<<use_TRK <<endl;
1500    
1501    
1502      //--------------------------------------------------
1503      // loop over "physical" tracks sorted by the tracker
1504      //--------------------------------------------------
1505      for (Int_t i = 0; i < trk2_obj->TrkLevel2::GetNTracks(); i++) {
1506    
1507        TrkTrack *ts = 0;
1508        CaloTrkVar *cs = 0;
1509        ToFTrkVar *os = 0;
1510        OrbitalInfoTrkVar *rs = 0;
1511    
1512        // get tracker tracks
1513        TrkTrack *tp = trk2_obj->TrkLevel2::GetTrack(i); //tracker
1514        CaloTrkVar *cp = GetCaloStoredTrack(tp->GetSeqNo());
1515        ToFTrkVar *op = GetToFStoredTrack(tp->GetSeqNo());
1516        OrbitalInfoTrkVar *rp = GetOrbitalInfoStoredTrack(tp->GetSeqNo());
1517    
1518        TrkTrack *ti = 0; //tracker (image)
1519        CaloTrkVar *ci = 0;
1520        ToFTrkVar *oi = 0;
1521        OrbitalInfoTrkVar *ri = 0;
1522        //  cout << "trk track n. "<<i << " "<<hex<< tp <<dec<< endl;
1523        // if track has an image, check image selection
1524    
1525        Int_t tp_score = 0; //main track sorted by the tracker
1526        Int_t ti_score = 0; //image track
1527        Int_t totp_score = 0; //main track sorted by the tracker
1528        Int_t toti_score = 0; //image track
1529    
1530        if (tp->HasImage()) {
1531    
1532          ti = trk2_obj->TrkLevel2::GetTrackImage(i); //tracker (image)
1533          ci = GetCaloStoredTrack(ti->GetSeqNo());
1534          oi = GetToFStoredTrack(ti->GetSeqNo());
1535          ri = GetOrbitalInfoStoredTrack(ti->GetSeqNo());
1536    
1537          //            cout << "its image "<<i << " "<<hex<< ti <<dec<< endl;
1538    
1539          //assign starting scores
1540          tp_score = 0; //main track sorted by the tracker
1541          ti_score = 0; //image track
1542    
1543          // -----------------------------------------------------------------------------------------
1544          // *****************************************************************************************
1545          // -----------------------------------------------------------------------------------------
1546          // calorimeter check
1547          // -----------------------------------------------------------------------------------------
1548          if (use_CAL && !calo2_obj) {
1549            cout << "void PamLevel2::SortTracks(): howtosort= " << how << " but CaloLevel2 not loaded !!!";
1550            return;
1551          };
1552          if (use_CAL && !cp && ci) {
1553            ti_score++;
1554            toti_score++;
1555          };
1556          if (use_CAL && cp && !ci) {
1557            tp_score++;
1558            totp_score++;
1559          };
1560          if (use_CAL && cp && ci && true) {
1561    
1562            if (cp->npresh > ci->npresh && true) {
1563              tp_score++;
1564              totp_score++;
1565            };
1566            if (cp->npresh < ci->npresh && true) {
1567              ti_score++;
1568              toti_score++;
1569            };
1570    
1571            //      cout << "CALO "<<tp_score<<ti_score<<endl;
1572    
1573          };
1574          // -----------------------------------------------------------------------------------------
1575          // *****************************************************************************************
1576          // -----------------------------------------------------------------------------------------
1577          // TOF check
1578          // -----------------------------------------------------------------------------------------
1579          // check the number of hit pmts along the track
1580          // on S12 S21 and S32, where paddles are parallel to Y axis
1581          if ((use_TOF || use_S1 || use_S2 || use_S3) && !tof2_obj) {
1582            cout << "void PamLevel2::SortTracks(): howtosort= " << how << " but ToFLevel2 not loaded !!!";
1583            return;
1584          };
1585          //
1586          if ((use_TOF || use_S1 || use_S2 || use_S3) && !op && oi) {
1587            ti_score++;
1588            toti_score++;
1589          };
1590          if ((use_TOF || use_S1 || use_S2 || use_S3) && op && !oi) {
1591            tp_score++;
1592            totp_score++;
1593          };
1594          if ((use_TOF || use_S1 || use_S2 || use_S3) && op && oi) {
1595            //
1596            Float_t sen = 0.;
1597            for (Int_t ih = 0; ih < op->npmtadc; ih++) {
1598              Int_t pl = tof2_obj->GetPlaneIndex((op->pmtadc).At(ih));
1599              if (pl == 2 || pl == 3 || pl == 4 || pl == 5)
1600                sen += (op->dedx).At(ih);
1601            };
1602            for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
1603              Int_t pl = tof2_obj->GetPlaneIndex((oi->pmtadc).At(ih));
1604              if (pl == 2 || pl == 3 || pl == 4 || pl == 5)
1605                sen += (oi->dedx).At(ih);
1606            };
1607            //
1608            if (sen >= sortthr && false) { // temporary disabled NUCLEI special algorithm since the new one should work for every particle (to be checked!)
1609              //printf(" IS A NUCLEUS! en = %f \n",sen);
1610              //
1611              // is a nucleus use a different algorithm
1612              //
1613              Int_t nz = 6;
1614              Float_t zin[6]; // << define TOF z-coordinates
1615              for (Int_t ip = 0; ip < nz; ip++)
1616                zin[ip] = tof2_obj->ToFLevel2::GetZTOF(tof2_obj->ToFLevel2::GetToFPlaneID(ip)); // << read ToF plane z-coordinates
1617              Trajectory *tr = new Trajectory(nz, zin);
1618              //
1619              Int_t nphit_p = 0;
1620              Int_t nphit_i = 0;
1621              Float_t enhit_p = 0.;
1622              Float_t enhit_i = 0.;
1623              //
1624              for (Int_t ih = 0; ih < op->npmtadc; ih++) {
1625                Int_t pl = tof2_obj->GetPlaneIndex((op->pmtadc).At(ih));
1626                if (pl == 1 || pl == 2 || pl == 5) {
1627                  nphit_p++;
1628                  enhit_p += (op->dedx).At(ih);
1629                };
1630              };
1631              //
1632              tp->DoTrack2(tr);
1633              //
1634              if (fabs(tr->y[0] - oi->ytofpos[0]) < 2.) {
1635                for (Int_t ih = 0; ih < op->npmtadc; ih++) {
1636                  Int_t pl = tof2_obj->GetPlaneIndex((op->pmtadc).At(ih));
1637                  if (pl == 0) {
1638                    nphit_p++;
1639                    enhit_p += (op->dedx).At(ih);
1640                  };
1641                };
1642              };
1643              if (fabs(tr->y[3] - oi->ytofpos[1]) < 2.) {
1644                for (Int_t ih = 0; ih < op->npmtadc; ih++) {
1645                  Int_t pl = tof2_obj->GetPlaneIndex((op->pmtadc).At(ih));
1646                  if (pl == 3) {
1647                    nphit_p++;
1648                    enhit_p += (op->dedx).At(ih);
1649                  };
1650                };
1651              };
1652              if (fabs(tr->y[4] - oi->ytofpos[2]) < 2.) {
1653                for (Int_t ih = 0; ih < op->npmtadc; ih++) {
1654                  Int_t pl = tof2_obj->GetPlaneIndex((op->pmtadc).At(ih));
1655                  if (pl == 4) {
1656                    nphit_p++;
1657                    enhit_p += (op->dedx).At(ih);
1658                  };
1659                };
1660              };
1661    
1662              for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
1663                Int_t pl = tof2_obj->GetPlaneIndex((oi->pmtadc).At(ih));
1664                if (pl == 1 || pl == 2 || pl == 5) {
1665                  nphit_i++;
1666                  enhit_i += (op->dedx).At(ih);
1667                };
1668              };
1669              //
1670              ti->DoTrack2(tr);
1671              //
1672              if (fabs(tr->y[0] - oi->ytofpos[0]) < 2.) {
1673                for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
1674                  Int_t pl = tof2_obj->GetPlaneIndex((oi->pmtadc).At(ih));
1675                  if (pl == 0) {
1676                    nphit_i++;
1677                    enhit_i += (op->dedx).At(ih);
1678                  };
1679                };
1680              };
1681              if (fabs(tr->y[3] - oi->ytofpos[1]) < 2.) {
1682                for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
1683                  Int_t pl = tof2_obj->GetPlaneIndex((oi->pmtadc).At(ih));
1684                  if (pl == 3) {
1685                    nphit_i++;
1686                    enhit_i += (op->dedx).At(ih);
1687                  };
1688                };
1689              };
1690              if (fabs(tr->y[4] - oi->ytofpos[2]) < 2.) {
1691                for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
1692                  Int_t pl = tof2_obj->GetPlaneIndex((oi->pmtadc).At(ih));
1693                  if (pl == 4) {
1694                    nphit_i++;
1695                    enhit_i += (op->dedx).At(ih);
1696                  };
1697                };
1698              };
1699    
1700              if ((use_TOF || use_S1 || use_S2 || use_S3) && (nphit_p + nphit_i) != 0 && true) {
1701    
1702                //      printf(" seqno %i nphit_p %i nphit_i %i enhit_p %f enhit_i %f \n",trk2_obj->TrkLevel2::GetSeqNo(i),nphit_p,nphit_i,enhit_p,enhit_i);
1703                //      printf(" score p %i score i %i \n",tp_score,ti_score);
1704                //            if( enhit_p > enhit_i ) tp_score++;
1705                //            if( nphit_p >= nphit_i && enhit_p > enhit_i ) tp_score++;
1706                if (nphit_p > nphit_i)
1707                  tp_score++;
1708                if (nphit_p < nphit_i)
1709                  ti_score++;
1710                if (nphit_p == nphit_i) {
1711                  if (enhit_p > enhit_i)
1712                    tp_score++;
1713                  else
1714                    ti_score++;
1715                };
1716                //      printf(" dopo score p %i score i %i \n",tp_score,ti_score);
1717              };
1718              delete tr;
1719              //
1720            }
1721            else {
1722              // -------------
1723              // NOT a NUCLEUS
1724              // -------------
1725              //printf(" NOT a NUCLEUS! en = %f \n",sen);
1726    
1727              Int_t nphit_p = 0;
1728              Int_t nphit_i = 0;
1729    
1730              /*                            cout << "track: npmtadc "<< op->npmtadc << endl;
1731               cout << "track: npmttdc "<< op->npmttdc << endl;
1732               cout << "image: npmtadc "<< oi->npmtadc << endl;
1733               cout << "image: npmttdc "<< oi->npmttdc << endl;*/
1734    
1735              //      for (Int_t ih=0; ih < op->npmtadc; ih++){
1736              //        Int_t pl = tof2_obj->GetPlaneIndex( (op->pmtadc).At(ih) );
1737              //        if(pl == 1 || pl == 2 || pl == 5)nphit_p++;
1738              //      };
1739    
1740              //      for (Int_t ih=0; ih < oi->npmtadc; ih++){
1741              //        Int_t pl = tof2_obj->GetPlaneIndex( (oi->pmtadc).At(ih) );
1742              //        if(pl == 1 || pl == 2 || pl == 5)nphit_i++;
1743              //      };
1744              // --- modified to count tdc signals (more efficient?)
1745              // --- and to implement check on tdcflag
1746              for (Int_t ih = 0; ih < op->npmttdc; ih++) {
1747                Int_t pl = tof2_obj->GetPlaneIndex((op->pmttdc).At(ih));
1748                //      if( (op->tdcflag).At(ih)==0 && (pl == 1 || pl == 2 || pl == 5) )nphit_p++;
1749                if ((use_S1 && (pl == 0 || pl == 1)) || (use_S2 && (pl == 2 || pl == 3))
1750                    || (use_S3 && (pl == 4 || pl == 5))) {
1751                  if ((op->tdcflag).At(ih) == 0)
1752                    nphit_p++;
1753                };
1754              };
1755    
1756              for (Int_t ih = 0; ih < oi->npmttdc; ih++) {
1757                Int_t pl = tof2_obj->GetPlaneIndex((oi->pmttdc).At(ih));
1758                //      if( (oi->tdcflag).At(ih)==0 && (pl == 1 || pl == 2 || pl == 5) )nphit_i++;
1759                if ((use_S1 && (pl == 0 || pl == 1)) || (use_S2 && (pl == 2 || pl == 3))
1760                    || (use_S3 && (pl == 4 || pl == 5))) {
1761                  if ((oi->tdcflag).At(ih) == 0)
1762                    nphit_i++;
1763                };
1764              };
1765    
1766              if ((nphit_p + nphit_i) != 0 && true) {
1767    
1768                if (nphit_p != nphit_i) {
1769                  totp_score += nphit_p;
1770                  toti_score += nphit_i;
1771                  tp_score += nphit_p;
1772                  ti_score += nphit_i;
1773                };
1774                //      if     ( nphit_p > nphit_i) tp_score+=nphit_p;
1775                //      else if( nphit_p < nphit_i) ti_score+=nphit_i;
1776                //      else ;//niente
1777              };
1778            };
1779            //      cout << "TOF "<<tp_score<<ti_score<<endl;
1780          };
1781    
1782          //      if(tp_score == ti_score) use_TRK = true;
1783    
1784    
1785          // -----------------------------------------------------------------------------------------
1786          // *****************************************************************************************
1787          // -----------------------------------------------------------------------------------------
1788          // tracker check
1789          // -----------------------------------------------------------------------------------------
1790          // chi**2 difference is not always large enough to distinguish among
1791          // the real track and its image.
1792          // Tracker check will be applied always when calorimeter and tof information is ambiguous.
1793          // *** MODIFIED ON AUGUST 2007 ***
1794          if (use_TRK) {
1795            //      if(      tp->chi2 > 0 && tp->chi2 < ti->chi2 ) tp_score++ ;
1796            //      else if( ti->chi2 > 0 && ti->chi2 < tp->chi2 ) ti_score++ ;
1797    
1798            // CHECK 1 : number of points along X
1799            if (tp->GetNX() >= ti->GetNX()) {
1800              tp_score++;
1801              totp_score++;
1802            };
1803            if (tp->GetNX() <= ti->GetNX()) {
1804              ti_score++;
1805              toti_score++;
1806            };
1807            // CHECK 2 : number of points along Y
1808            if (tp->GetNY() >= ti->GetNY()) {
1809              tp_score++;
1810              totp_score++;
1811            };
1812            if (tp->GetNY() <= ti->GetNY()) {
1813              ti_score++;
1814              toti_score++;
1815            };
1816    
1817            //      cout << "TRK "<<tp_score<<ti_score<<endl;
1818          };
1819    
1820          // -----------------------------------------------------------------------------------------
1821          // *****************************************************************************************
1822          // -----------------------------------------------------------------------------------------
1823          // GPamela check
1824          // -----------------------------------------------------------------------------------------
1825    
1826          //---------------------------------------------------
1827          // count the number of GP hits
1828          //---------------------------------------------------
1829          if (use_GP) {
1830            int ngphits_p = 0;
1831            int ngphits_i = 0;
1832            float toll = 0.02; //200 micron
1833            for (int ih = 0; ih < GetGPamela()->Nthspe; ih++) {
1834              int ip = (Int_t) GetGPamela()->Itrpb[ih] - 1;
1835              if (tp && tp->YGood(ip) && fabs(tp->ym[ip] - GetGPamela()->Yavspe[ih]) < toll && true)
1836                ngphits_p++;
1837              if (ti && ti->YGood(ip) && fabs(ti->ym[ip] - GetGPamela()->Yavspe[ih]) < toll && true)
1838                ngphits_i++;
1839            }
1840            if (ngphits_p > ngphits_i && true) {
1841              tp_score++;
1842              totp_score++;
1843            }
1844            if (ngphits_p < ngphits_i && true) {
1845              ti_score++;
1846              toti_score++;
1847            }
1848          }
1849    
1850          // *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
1851          // the winner is....
1852          // *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
1853          if (tp_score > ti_score) {
1854    
1855          }
1856          else if (tp_score < ti_score) {
1857    
1858            ts = ti;//its image!!
1859            cs = ci;
1860            os = oi;
1861            rs = ri;
1862            Int_t totis = toti_score;
1863    
1864            ti = tp;//its image!!
1865            ci = cp;
1866            oi = op;
1867            ri = rp;
1868    
1869            tp = ts;//its image!!
1870            cp = cs;
1871            op = os;
1872            rp = rs;
1873    
1874            toti_score = totp_score;
1875            totp_score = totis;
1876    
1877          }
1878          else {
1879    
1880            //      cout << "Warning - track image ambiguity not solved" << endl;
1881    
1882          };
1883    
1884        }
1885        else {
1886          totp_score = 1;
1887          toti_score = 0;
1888    
1889          //            ts = tp;
1890          //            cs = cp;
1891          //            os = op;
1892        };
1893    
1894        //  cout <<" SortTracks() "<<i<<" -- "<<ts<<endl;
1895        //  sorted_tracks->Add(ts);//save the track in the sorted array
1896        //  sorted_tracks.Add(ts);//save the track in the sorted array
1897        //  sorted_tracks.Add(tp);//save the track in the sorted array
1898        //  cout << "SortTracks:: sorted_tracks->Add(it) "<<i<<" "<<ts<<endl;
1899        //  cout<<"o "<<tp<<endl;
1900        //  cout<<"o "<<cp<<endl;
1901        //  cout<<"o "<<op<<endl;
1902    
1903        new (ttsorted[i]) PamTrack(tp, cp, op, rp);
1904        new (ttimage[i]) PamTrack(ti, ci, oi, ri);
1905    
1906        ((PamTrack*) (ttsorted[i]))->SetPScore(totp_score);
1907        ((PamTrack*) (ttsorted[i]))->SetIScore(toti_score);
1908        ((PamTrack*) (ttimage[i]))->SetPScore(totp_score);
1909        ((PamTrack*) (ttimage[i]))->SetIScore(toti_score);
1910      };
1911    
1912      if (tsorted->GetEntries() != trk2_obj->GetNTracks()) {
1913        cout << "void PamLevel2::SortTracks(): tsorted->GetEntries() " << tsorted->GetEntries()
1914            << " != trk2_obj->GetNTracks() = " << trk2_obj->GetNTracks() << endl;
1915        tsorted->Delete();
1916        tsorted = 0;
1917        timage->Delete();
1918        timage = 0;
1919      }
1920    
1921      //Restore Object count
1922      //To save space in the table keeping track of all referenced objects
1923      //We reset the object count to what it was at the beginning of the event.
1924      TProcessID::SetObjectCount(ObjectNumber);
1925    
1926      //Everything went fine so the current event can be tagged as sorted
1927      issorted = true;
1928      lastsorted = GetReadEntry();
1929    
1930    }
1931    ;
1932    //
1933    //--------------------------------------
1934    /**
1935     * Sort physical (tracker) tracks.
1936     * @param how String to set the sorting cryterium (es: "CAL" or "TRK+CAL+TOF" ecc...).
1937     * Sorting cryteria:
1938     * TRK: lower chi**2
1939     * CAL: lower Y spatial residual on the first calorimeter plane
1940     * TOF: bigger numebr of hit PMTs along the track, on S12 S21 S32 (where paddles are along the Y axis).
1941     * S1: (ask Emiliano)
1942     * S2: (ask Emiliano)
1943     * S3: (ask Emiliano)
1944     * GP: more GP hits
1945     * The default sorting cryterium is "TOF+CAL".
1946     *
1947     * The total number of physical tracks is always given by GetNTracks() and the it-th physical track can be retrieved by means of the methods GetTrack(int it) and GetTrack(int it, TString how).
1948     *
1949     * New version, with handling of extended tracks and nuclei tracks.
1950     */
1951    void PamLevel2::SortTracksNew() {
1952    
1953      //--------------------------------------------------
1954      //Check if the current event has already been sorted
1955      //--------------------------------------------------
1956      if (issorted_new && lastsorted_new == GetReadEntry()) {
1957          return; //already done for this event
1958      }
1959    
1960    
1961    //  cout << "SORT" << endl;
1962    
1963      //Reset the sort flags, just in case something will go wrong...
1964      issorted_new = false;
1965      lastsorted_new = -1;
1966    
1967      //--------------------------------------------------
1968      // set input variables
1969      //--------------------------------------------------
1970    
1971      TString how = howtosort;
1972      //Save current Object count
1973      Int_t ObjectNumber = TProcessID::GetObjectCount();
1974    
1975    
1976    
1977    
1978      TrkLevel2  * trk2 ;
1979      CaloLevel2 * calo2;
1980      ToFLevel2  * tof2  ;
1981      OrbitalInfo  * orb2 ;
1982      
1983      TClonesArray * trkext ;
1984      TClonesArray * caloext;
1985      TClonesArray * tofext ;
1986      TClonesArray * orbext ;
1987    
1988    
1989    //   cout << "trk2_obj" << trk2_obj<< endl;
1990    //   cout << "trk2_nuc_obj" << trk2_nuc_obj<< endl;
1991    //   cout << " trk_ext_obj "<<trk_ext_obj<< endl;
1992    //   cout << " trk_ext_nuc_obj "<<trk_ext_nuc_obj<< endl;
1993    
1994      //-----------------------------------------------------------
1995      // create/reset TCloneArrays to store tracks and their images
1996      //-----------------------------------------------------------
1997    
1998    //  cout << " PamLevel2::SortTracksNew() --- Clear TClonesArray objects"<<endl;
1999      
2000      // main tracks from standard alg
2001    //   if (!tsorted)
2002    //       tsorted = new TClonesArray("PamTrack", trk2_obj->GetNTracks());
2003    //   tsorted->Clear("C+C");//Delete();
2004    //   // track images from standard alg
2005    //   if (!timage)
2006    //       timage = new TClonesArray("PamTrack", trk2_obj->GetNTracks());
2007    //   timage->Clear("C+C");//Delete();
2008    //   // tracks from extended algorythm
2009    //   if(EXT && !text)
2010    //       text = new TClonesArray("PamTrack",trk_ext_obj->GetEntries());
2011    //   if(text)text->Clear("C+C");//Delete();
2012    
2013      if(tsorted)delete tsorted;
2014      if(timage) delete timage;
2015      if(text)   delete text;
2016      tsorted = new TClonesArray("PamTrack", trk2_obj->GetNTracks());
2017      timage = new TClonesArray("PamTrack", trk2_obj->GetNTracks());
2018      text = new TClonesArray("PamTrack",trk_ext_obj->GetEntries());
2019    
2020      //-----------------------------------------------------------
2021      // create/reset TCloneArrays to store tracks and their images
2022      //-----------------------------------------------------------
2023      if(NUC){
2024    
2025          
2026          if(tsorted_nuc)delete tsorted_nuc;
2027          if(timage_nuc) delete timage_nuc;
2028          if(text_nuc)   delete text_nuc;
2029          tsorted_nuc = new TClonesArray("PamTrack", trk2_nuc_obj->GetNTracks());
2030          timage_nuc = new TClonesArray("PamTrack", trk2_nuc_obj->GetNTracks());
2031          text_nuc = new TClonesArray("PamTrack",trk_ext_nuc_obj->GetEntries());
2032    
2033      // main tracks from standard alg
2034    //       if (!tsorted_nuc)
2035    //        tsorted_nuc = new TClonesArray("PamTrack", trk2_nuc_obj->GetNTracks());
2036    //       tsorted_nuc->Clear("C+C");//Delete();
2037    //       // track images from standard alg
2038    //       if (!timage_nuc)
2039    //        timage_nuc = new TClonesArray("PamTrack", trk2_nuc_obj->GetNTracks());
2040    //       timage_nuc->Clear("C+C");//Delete();
2041    //       // tracks from extended algorythm
2042    //       if(EXT && !text_nuc)
2043    //        text_nuc = new TClonesArray("PamTrack",trk_ext_nuc_obj->GetEntries());
2044    //       if(text_nuc)text_nuc->Clear("C+C");//Delete();
2045    
2046      }
2047      //--------------------------------------------------
2048      // retrieve sorting method
2049      //--------------------------------------------------
2050      Bool_t use_TRK = how.Contains("TRK", TString::kIgnoreCase);
2051      Bool_t use_CAL = how.Contains("CAL", TString::kIgnoreCase);
2052      Bool_t use_TOF = how.Contains("TOF", TString::kIgnoreCase);
2053      Bool_t use_S1 = how.Contains("S1", TString::kIgnoreCase);
2054      Bool_t use_S2 = how.Contains("S2", TString::kIgnoreCase);
2055      Bool_t use_S3 = how.Contains("S3", TString::kIgnoreCase);
2056      Bool_t use_GP = how.Contains("GP", TString::kIgnoreCase);
2057    
2058      if (use_TOF) {
2059        use_S1 = true;
2060        use_S2 = true;
2061        use_S3 = true;
2062      };
2063      if (!CAL2 && use_CAL)
2064        use_CAL = false;
2065      if (!TOF) {
2066        use_TOF = false;
2067        use_S1 = false;
2068        use_S2 = false;
2069        use_S3 = false;
2070      }
2071      if (!GP) {
2072        use_GP = false;
2073      }
2074    
2075      if (!TRK2) {
2076        cout << "SortTracks() : without tracker does not work!!! (not yet)" << endl;
2077        return;
2078      };
2079    
2080    
2081      ///////////////////////////////////////////////////////////////////////////////////
2082      //
2083      //   sort tracks and fill PamTrack arrays
2084      //
2085      ///////////////////////////////////////////////////////////////////////////////////
2086      for(int doit=0; doit<2; doit++){
2087    
2088    //       cout << "doit "<<doit<<endl;
2089    
2090    
2091          if(doit == 0){
2092    
2093              trk2  = trk2_obj;
2094              calo2 = calo2_obj;
2095              tof2  = tof2_obj;
2096              orb2  = orb2_obj;
2097          
2098              trkext = trk_ext_obj;
2099              caloext = calo_ext_obj;
2100              tofext = tof_ext_obj;
2101              orbext = orb_ext_obj;
2102        
2103          
2104          
2105          
2106    
2107          }else if (doit == 1){
2108    
2109              if(!NUC)break;
2110    
2111          
2112              trk2  = trk2_nuc_obj;
2113              calo2 = calo2_nuc_obj;
2114              tof2  = tof2_nuc_obj;
2115              orb2  = orb2_nuc_obj;
2116          
2117              trkext = trk_ext_nuc_obj;
2118              caloext = calo_ext_nuc_obj;
2119              tofext = tof_ext_nuc_obj;
2120              orbext = orb_ext_nuc_obj;
2121          
2122          
2123          
2124    
2125          }
2126    
2127    //       cout << "trk2" << trk2<<endl;
2128    //       cout << "calo2" << calo2<<endl;
2129    //       cout << "tof2" << tof2<<endl;
2130    //       cout << "orb2" << orb2<<endl;
2131    //       cout << "trkext" <<trkext <<endl;
2132    //       cout << "tofext" << tofext<<endl;
2133    //       cout << "caloext" << caloext<<endl;
2134    //       cout << "orbext" << orbext<<endl;
2135    
2136          TClonesArray &ttext    = (doit==0 ? *text : *text_nuc);
2137          TClonesArray &ttimage  = (doit==0 ? *timage : *timage_nuc);
2138          TClonesArray &ttsorted = (doit==0 ? *tsorted : *tsorted_nuc);
2139      
2140    //       cout << "tsorted + timage "<<doit<<endl;
2141    
2142          //--------------------------------------------------
2143          // loop over "physical" tracks sorted by the tracker
2144          //--------------------------------------------------
2145          for (Int_t i = 0; i < trk2->TrkLevel2::GetNTracks(); i++) {
2146    
2147              TrkTrack *ts = 0;
2148              CaloTrkVar *cs = 0;
2149              ToFTrkVar *os = 0;
2150              OrbitalInfoTrkVar *rs = 0;
2151    
2152              // get tracker tracks
2153              TrkTrack *tp = trk2->GetTrack(i); //tracker
2154              CaloTrkVar *cp = calo2->GetCaloStoredTrack(tp->GetSeqNo());
2155              ToFTrkVar *op = tof2->GetToFStoredTrack(tp->GetSeqNo());
2156              OrbitalInfoTrkVar *rp = orb2->GetOrbitalInfoStoredTrack(tp->GetSeqNo());
2157    
2158              TrkTrack *ti = 0; //tracker (image)
2159              CaloTrkVar *ci = 0;
2160              ToFTrkVar *oi = 0;
2161              OrbitalInfoTrkVar *ri = 0;
2162              //    cout << "trk track n. "<<i << " "<<hex<< tp <<dec<< endl;
2163              // if track has an image, check image selection
2164    
2165              Int_t tp_score = 0; //main track sorted by the tracker
2166              Int_t ti_score = 0; //image track
2167              Int_t totp_score = 0; //main track sorted by the tracker
2168              Int_t toti_score = 0; //image track
2169    
2170              if (tp->HasImage()) {
2171    
2172                  ti = trk2->GetTrackImage(i); //tracker (image)
2173                  ci = calo2->GetCaloStoredTrack(ti->GetSeqNo());
2174                  oi = tof2->GetToFStoredTrack(ti->GetSeqNo());
2175                  ri = orb2->GetOrbitalInfoStoredTrack(ti->GetSeqNo());
2176    
2177                  //            cout << "its image "<<i << " "<<hex<< ti <<dec<< endl;
2178    
2179                  //assign starting scores
2180                  tp_score = 0; //main track sorted by the tracker
2181                  ti_score = 0; //image track
2182    
2183                  // -----------------------------------------------------------------------------------------
2184                  // *****************************************************************************************
2185                  // -----------------------------------------------------------------------------------------
2186                  // calorimeter check
2187                  // -----------------------------------------------------------------------------------------
2188                  if (use_CAL && !calo2) {
2189                      cout << "void PamLevel2::SortTracks(): howtosort= " << how << " but CaloLevel2 not loaded !!!";
2190                      return;
2191                  };
2192                  if (use_CAL && !cp && ci) {
2193                      ti_score++;
2194                      toti_score++;
2195                  };
2196                  if (use_CAL && cp && !ci) {
2197                      tp_score++;
2198                      totp_score++;
2199                  };
2200                  if (use_CAL && cp && ci && true) {
2201    
2202                      if (cp->npresh > ci->npresh && true) {
2203                          tp_score++;
2204                          totp_score++;
2205                      };
2206                      if (cp->npresh < ci->npresh && true) {
2207                          ti_score++;
2208                          toti_score++;
2209                      };
2210    
2211                      //    cout << "CALO "<<tp_score<<ti_score<<endl;
2212    
2213                  };
2214                  // -----------------------------------------------------------------------------------------
2215                  // *****************************************************************************************
2216                  // -----------------------------------------------------------------------------------------
2217                  // TOF check
2218                  // -----------------------------------------------------------------------------------------
2219                  // check the number of hit pmts along the track
2220                  // on S12 S21 and S32, where paddles are parallel to Y axis
2221                  if ((use_TOF || use_S1 || use_S2 || use_S3) && !tof2) {
2222                      cout << "void PamLevel2::SortTracks(): howtosort= " << how << " but ToFLevel2 not loaded !!!";
2223                      return;
2224                  };
2225                  //
2226                  if ((use_TOF || use_S1 || use_S2 || use_S3) && !op && oi) {
2227                      ti_score++;
2228                      toti_score++;
2229                  };
2230                  if ((use_TOF || use_S1 || use_S2 || use_S3) && op && !oi) {
2231                      tp_score++;
2232                      totp_score++;
2233                  };
2234                  if ((use_TOF || use_S1 || use_S2 || use_S3) && op && oi) {
2235                      //
2236                      Float_t sen = 0.;
2237                      for (Int_t ih = 0; ih < op->npmtadc; ih++) {
2238                          Int_t pl = tof2->GetPlaneIndex((op->pmtadc).At(ih));
2239                          if (pl == 2 || pl == 3 || pl == 4 || pl == 5)
2240                              sen += (op->dedx).At(ih);
2241                      };
2242                      for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
2243                          Int_t pl = tof2->GetPlaneIndex((oi->pmtadc).At(ih));
2244                          if (pl == 2 || pl == 3 || pl == 4 || pl == 5)
2245                              sen += (oi->dedx).At(ih);
2246                      };
2247                      //
2248                      if (sen >= sortthr && false) { // temporary disabled NUCLEI special algorithm since the new one should work for every particle (to be checked!)
2249                          //printf(" IS A NUCLEUS! en = %f \n",sen);
2250                          //
2251                          // is a nucleus use a different algorithm
2252                          //
2253                          Int_t nz = 6;
2254                          Float_t zin[6]; // << define TOF z-coordinates
2255                          for (Int_t ip = 0; ip < nz; ip++)
2256                              zin[ip] = tof2->GetZTOF(tof2->GetToFPlaneID(ip)); // << read ToF plane z-coordinates
2257                          Trajectory *tr = new Trajectory(nz, zin);
2258                          //
2259                          Int_t nphit_p = 0;
2260                          Int_t nphit_i = 0;
2261                          Float_t enhit_p = 0.;
2262                          Float_t enhit_i = 0.;
2263                          //
2264                          for (Int_t ih = 0; ih < op->npmtadc; ih++) {
2265                              Int_t pl = tof2->GetPlaneIndex((op->pmtadc).At(ih));
2266                              if (pl == 1 || pl == 2 || pl == 5) {
2267                                  nphit_p++;
2268                                  enhit_p += (op->dedx).At(ih);
2269                              };
2270                          };
2271                          //
2272                          tp->DoTrack2(tr);
2273                          //
2274                          if (fabs(tr->y[0] - oi->ytofpos[0]) < 2.) {
2275                              for (Int_t ih = 0; ih < op->npmtadc; ih++) {
2276                                  Int_t pl = tof2->GetPlaneIndex((op->pmtadc).At(ih));
2277                                  if (pl == 0) {
2278                                      nphit_p++;
2279                                      enhit_p += (op->dedx).At(ih);
2280                                  };
2281                              };
2282                          };
2283                          if (fabs(tr->y[3] - oi->ytofpos[1]) < 2.) {
2284                              for (Int_t ih = 0; ih < op->npmtadc; ih++) {
2285                                  Int_t pl = tof2->GetPlaneIndex((op->pmtadc).At(ih));
2286                                  if (pl == 3) {
2287                                      nphit_p++;
2288                                      enhit_p += (op->dedx).At(ih);
2289                                  };
2290                              };
2291                          };
2292                          if (fabs(tr->y[4] - oi->ytofpos[2]) < 2.) {
2293                              for (Int_t ih = 0; ih < op->npmtadc; ih++) {
2294                                  Int_t pl = tof2->GetPlaneIndex((op->pmtadc).At(ih));
2295                                  if (pl == 4) {
2296                                      nphit_p++;
2297                                      enhit_p += (op->dedx).At(ih);
2298                                  };
2299                              };
2300                          };
2301    
2302                          for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
2303                              Int_t pl = tof2->GetPlaneIndex((oi->pmtadc).At(ih));
2304                              if (pl == 1 || pl == 2 || pl == 5) {
2305                                  nphit_i++;
2306                                  enhit_i += (op->dedx).At(ih);
2307                              };
2308                          };
2309                          //
2310                          ti->DoTrack2(tr);
2311                          //
2312                          if (fabs(tr->y[0] - oi->ytofpos[0]) < 2.) {
2313                              for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
2314                                  Int_t pl = tof2->GetPlaneIndex((oi->pmtadc).At(ih));
2315                                  if (pl == 0) {
2316                                      nphit_i++;
2317                                      enhit_i += (op->dedx).At(ih);
2318                                  };
2319                              };
2320                          };
2321                          if (fabs(tr->y[3] - oi->ytofpos[1]) < 2.) {
2322                              for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
2323                                  Int_t pl = tof2->GetPlaneIndex((oi->pmtadc).At(ih));
2324                                  if (pl == 3) {
2325                                      nphit_i++;
2326                                      enhit_i += (op->dedx).At(ih);
2327                                  };
2328                              };
2329                          };
2330                          if (fabs(tr->y[4] - oi->ytofpos[2]) < 2.) {
2331                              for (Int_t ih = 0; ih < oi->npmtadc; ih++) {
2332                                  Int_t pl = tof2->GetPlaneIndex((oi->pmtadc).At(ih));
2333                                  if (pl == 4) {
2334                                      nphit_i++;
2335                                      enhit_i += (op->dedx).At(ih);
2336                                  };
2337                              };
2338                          };
2339    
2340                          if ((use_TOF || use_S1 || use_S2 || use_S3) && (nphit_p + nphit_i) != 0 && true) {
2341    
2342                              //        printf(" seqno %i nphit_p %i nphit_i %i enhit_p %f enhit_i %f \n",trk2_obj->TrkLevel2::GetSeqNo(i),nphit_p,nphit_i,enhit_p,enhit_i);
2343                              //        printf(" score p %i score i %i \n",tp_score,ti_score);
2344                              //              if( enhit_p > enhit_i ) tp_score++;
2345                              //              if( nphit_p >= nphit_i && enhit_p > enhit_i ) tp_score++;
2346                              if (nphit_p > nphit_i)
2347                                  tp_score++;
2348                              if (nphit_p < nphit_i)
2349                                  ti_score++;
2350                              if (nphit_p == nphit_i) {
2351                                  if (enhit_p > enhit_i)
2352                                      tp_score++;
2353                                  else
2354                                      ti_score++;
2355                              };
2356                              //        printf(" dopo score p %i score i %i \n",tp_score,ti_score);
2357                          };
2358                          delete tr;
2359                          //
2360                      }
2361                      else {
2362                          // -------------
2363                          // NOT a NUCLEUS
2364                          // -------------
2365                          //printf(" NOT a NUCLEUS! en = %f \n",sen);
2366    
2367                          Int_t nphit_p = 0;
2368                          Int_t nphit_i = 0;
2369    
2370                          /*                                cout << "track: npmtadc "<< op->npmtadc << endl;
2371                            cout << "track: npmttdc "<< op->npmttdc << endl;
2372                            cout << "image: npmtadc "<< oi->npmtadc << endl;
2373                            cout << "image: npmttdc "<< oi->npmttdc << endl;*/
2374    
2375                          //          for (Int_t ih=0; ih < op->npmtadc; ih++){
2376                          //            Int_t pl = tof2_obj->GetPlaneIndex( (op->pmtadc).At(ih) );
2377                          //            if(pl == 1 || pl == 2 || pl == 5)nphit_p++;
2378                          //          };
2379    
2380                          //          for (Int_t ih=0; ih < oi->npmtadc; ih++){
2381                          //            Int_t pl = tof2_obj->GetPlaneIndex( (oi->pmtadc).At(ih) );
2382                          //            if(pl == 1 || pl == 2 || pl == 5)nphit_i++;
2383                          //          };
2384                          // --- modified to count tdc signals (more efficient?)
2385                          // --- and to implement check on tdcflag
2386                          for (Int_t ih = 0; ih < op->npmttdc; ih++) {
2387                              Int_t pl = tof2->GetPlaneIndex((op->pmttdc).At(ih));
2388                              //        if( (op->tdcflag).At(ih)==0 && (pl == 1 || pl == 2 || pl == 5) )nphit_p++;
2389                              if ((use_S1 && (pl == 0 || pl == 1)) || (use_S2 && (pl == 2 || pl == 3))
2390                                  || (use_S3 && (pl == 4 || pl == 5))) {
2391                                  if ((op->tdcflag).At(ih) == 0)
2392                                      nphit_p++;
2393                              };
2394                          };
2395    
2396                          for (Int_t ih = 0; ih < oi->npmttdc; ih++) {
2397                              Int_t pl = tof2->GetPlaneIndex((oi->pmttdc).At(ih));
2398                              //        if( (oi->tdcflag).At(ih)==0 && (pl == 1 || pl == 2 || pl == 5) )nphit_i++;
2399                              if ((use_S1 && (pl == 0 || pl == 1)) || (use_S2 && (pl == 2 || pl == 3))
2400                                  || (use_S3 && (pl == 4 || pl == 5))) {
2401                                  if ((oi->tdcflag).At(ih) == 0)
2402                                      nphit_i++;
2403                              };
2404                          };
2405    
2406                          if ((nphit_p + nphit_i) != 0 && true) {
2407    
2408                              if (nphit_p != nphit_i) {
2409                                  totp_score += nphit_p;
2410                                  toti_score += nphit_i;
2411                                  tp_score += nphit_p;
2412                                  ti_score += nphit_i;
2413                              };
2414                              //        if     ( nphit_p > nphit_i) tp_score+=nphit_p;
2415                              //        else if( nphit_p < nphit_i) ti_score+=nphit_i;
2416                              //        else ;//niente
2417                          };
2418                      };
2419                      //    cout << "TOF "<<tp_score<<ti_score<<endl;
2420                  };
2421    
2422                  //      if(tp_score == ti_score) use_TRK = true;
2423    
2424    
2425                  // -----------------------------------------------------------------------------------------
2426                  // *****************************************************************************************
2427                  // -----------------------------------------------------------------------------------------
2428                  // tracker check
2429                  // -----------------------------------------------------------------------------------------
2430                  // chi**2 difference is not always large enough to distinguish among
2431                  // the real track and its image.
2432                  // Tracker check will be applied always when calorimeter and tof information is ambiguous.
2433                  // *** MODIFIED ON AUGUST 2007 ***
2434                  if (use_TRK) {
2435                      //    if(      tp->chi2 > 0 && tp->chi2 < ti->chi2 ) tp_score++ ;
2436                      //    else if( ti->chi2 > 0 && ti->chi2 < tp->chi2 ) ti_score++ ;
2437    
2438                      // CHECK 1 : number of points along X
2439                      if (tp->GetNX() >= ti->GetNX()) {
2440                          tp_score++;
2441                          totp_score++;
2442                      };
2443                      if (tp->GetNX() <= ti->GetNX()) {
2444                          ti_score++;
2445                          toti_score++;
2446                      };
2447                      // CHECK 2 : number of points along Y
2448                      if (tp->GetNY() >= ti->GetNY()) {
2449                          tp_score++;
2450                          totp_score++;
2451                      };
2452                      if (tp->GetNY() <= ti->GetNY()) {
2453                          ti_score++;
2454                          toti_score++;
2455                      };
2456    
2457                      //    cout << "TRK "<<tp_score<<ti_score<<endl;
2458                  };
2459    
2460                  // -----------------------------------------------------------------------------------------
2461                  // *****************************************************************************************
2462                  // -----------------------------------------------------------------------------------------
2463                  // GPamela check
2464                  // -----------------------------------------------------------------------------------------
2465    
2466                  //---------------------------------------------------
2467                  // count the number of GP hits
2468                  //---------------------------------------------------
2469                  if (use_GP) {
2470                      int ngphits_p = 0;
2471                      int ngphits_i = 0;
2472                      float toll = 0.02; //200 micron
2473                      for (int ih = 0; ih < GetGPamela()->Nthspe; ih++) {
2474                          int ip = (Int_t) GetGPamela()->Itrpb[ih] - 1;
2475                          if (tp && tp->YGood(ip) && fabs(tp->ym[ip] - GetGPamela()->Yavspe[ih]) < toll && true)
2476                              ngphits_p++;
2477                          if (ti && ti->YGood(ip) && fabs(ti->ym[ip] - GetGPamela()->Yavspe[ih]) < toll && true)
2478                              ngphits_i++;
2479                      }
2480                      if (ngphits_p > ngphits_i && true) {
2481                          tp_score++;
2482                          totp_score++;
2483                      }
2484                      if (ngphits_p < ngphits_i && true) {
2485                          ti_score++;
2486                          toti_score++;
2487                      }
2488                  }
2489    
2490                  // *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
2491                  // the winner is....
2492                  // *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
2493                  if (tp_score > ti_score) {
2494    
2495                  }
2496                  else if (tp_score < ti_score) {
2497    
2498                      ts = ti;//its image!!
2499                      cs = ci;
2500                      os = oi;
2501                      rs = ri;
2502                      Int_t totis = toti_score;
2503    
2504                      ti = tp;//its image!!
2505                      ci = cp;
2506                      oi = op;
2507                      ri = rp;
2508    
2509                      tp = ts;//its image!!
2510                      cp = cs;
2511                      op = os;
2512                      rp = rs;
2513    
2514                      toti_score = totp_score;
2515                      totp_score = totis;
2516    
2517                  }
2518                  else {
2519    
2520                      //    cout << "Warning - track image ambiguity not solved" << endl;
2521    
2522                  };
2523    
2524              }
2525              else {
2526                  totp_score = 1;
2527                  toti_score = 0;
2528    
2529                  //            ts = tp;
2530                  //            cs = cp;
2531                  //            os = op;
2532              };
2533    
2534              //    cout <<" SortTracks() "<<i<<" -- "<<ts<<endl;
2535              //    sorted_tracks->Add(ts);//save the track in the sorted array
2536              //    sorted_tracks.Add(ts);//save the track in the sorted array
2537              //    sorted_tracks.Add(tp);//save the track in the sorted array
2538              //    cout << "SortTracks:: sorted_tracks->Add(it) "<<i<<" "<<ts<<endl;
2539              //    cout<<"o "<<tp<<endl;
2540              //    cout<<"o "<<cp<<endl;
2541              //    cout<<"o "<<op<<endl;
2542    
2543              new (ttsorted[i]) PamTrack(tp, cp, op, rp);
2544              new (ttimage[i]) PamTrack(ti, ci, oi, ri);
2545    
2546              ((PamTrack*) (ttsorted[i]))->SetPScore(totp_score);
2547              ((PamTrack*) (ttsorted[i]))->SetIScore(toti_score);
2548              ((PamTrack*) (ttimage[i]))->SetPScore(totp_score);
2549              ((PamTrack*) (ttimage[i]))->SetIScore(toti_score);
2550          };
2551    
2552    
2553    
2554    
2555    
2556    //   if (tsorted->GetEntries() != trk2->GetNTracks()) {
2557    //     cout << "void PamLevel2::SortTracks(): tsorted->GetEntries() " << tsorted->GetEntries()
2558    //         << " != trk2->GetNTracks() = " << trk2->GetNTracks() << endl;
2559    //     tsorted->Delete();
2560    //     tsorted = 0;
2561    //     timage->Delete();
2562    //     timage = 0;
2563    //   }
2564    
2565    
2566    //       cout << "text "<<doit<<endl;
2567    
2568    
2569          //--------------------------------------------------
2570          // fill array with extended tracks (this is easy...)
2571          //--------------------------------------------------
2572          if(EXT){
2573              for(int it=0; it<trkext->GetEntries(); it++){
2574                  
2575                  new (ttext[it]) PamTrack((ExtTrack*)(*trkext)[it], (CaloTrkVar*)(*caloext)[it], (ToFTrkVar*)(*tofext)[it], (OrbitalInfoTrkVar*)(*orbext)[it]);
2576                  
2577              }
2578          }
2579          
2580    
2581    
2582      };
2583    
2584    
2585      //Restore Object count
2586      //To save space in the table keeping track of all referenced objects
2587      //We reset the object count to what it was at the beginning of the event.
2588      TProcessID::SetObjectCount(ObjectNumber);
2589    
2590      //Everything went fine so the current event can be tagged as sorted
2591      issorted_new = true;
2592      lastsorted_new = GetReadEntry();
2593    
2594    //   cout << " tsorted "<< tsorted << " "<<(tsorted ? tsorted->GetEntries() : 0)<<endl;
2595    //   cout << " timage  "<< timage  << " "<<(timage  ? timage->GetEntries() : 0)<<endl;
2596    //   cout << " text    "<< text    << " "<<(text    ? text->GetEntries() : 0)<<endl;
2597    
2598    
2599    };
2600    //--------------------------------------
2601    //
2602    //
2603    //--------------------------------------
2604    /**
2605     * This method overrides TrkLevel2::GetTracks(), where sorting is done by decreasing number of fit points and increasing chi^2.
2606     * PamLevel2::GetTracks() keeps the same track order given by TrkLevel2::GetTracks(), but checks image selection by using calorimeter and ToF tracking information.
2607     */
2608    
2609    // TRefArray *PamLevel2::GetTracks(){
2610    
2611    // //  *-*-*-*-*-*-*-*-*-*-*-*-*
2612    //     SortTracks("+CAL+TOF");
2613    // //  *-*-*-*-*-*-*-*-*-*-*-*-*
2614    
2615    // //   return  sorted_tracks;
2616    //     return &sorted_tracks;
2617    
2618    //  };
2619    
2620    
2621    //--------------------------------------
2622    //
2623    //
2624    //--------------------------------------
2625    
2626    /**
2627     * Retrieves the it-th Pamela "physical" track.
2628     * It override TrkLevel2::GetTrack(int it).
2629     * @param it Track number, ranging from 0 to GetNTracks().
2630     */
2631    PamTrack *PamLevel2::GetTrackOld(int it) {
2632    
2633      PamTrack *track = NULL;
2634    
2635      //  *-*-*-*-*-*-*-*-*-*-*-*-*
2636      SortTracks();
2637      //  *-*-*-*-*-*-*-*-*-*-*-*-*
2638      if (!tsorted)
2639        return track;
2640      if (!tsorted->GetEntries())
2641        return track;
2642    
2643    
2644      if (it >= 0 && it < trk2_obj->TrkLevel2::GetNTracks()) {
2645        track = (PamTrack*)((*tsorted)[it]);
2646      }
2647      else {
2648        cout << "PamLevel2::GetTrackOld(int) : tracker track SeqNo " << it << " does not exist (GetNTracks() = "
2649            << trk2_obj->TrkLevel2::GetNTracks() << ")" << endl;
2650      };
2651    
2652      return track;
2653    
2654    };
2655    
2656    //PamTrack *PamLevel2::GetTrack(int it) { return GetTrack(it,trkAlg); };
2657    
2658    /**
2659     * Retrieves the it-th Pamela "physical" track.
2660     * It override TrkLevel2::GetTrack(int it).
2661     * @param it Track number, ranging from 0 to GetNTracks().
2662     * @param alg Algorythm, see SetTrakingAlgorythm(char *alg) for explanation.
2663     */
2664    PamTrack *PamLevel2::GetTrack(int it, const char* alg) {
2665    
2666        TString s(alg);
2667        if(!s.CompareTo("") ||!s.CompareTo("STD") )return GetTrackOld(it); //old algorythm
2668    
2669    
2670        SortTracksNew();
2671        // >> fill tsorted, timage and text
2672    
2673        if ( ( !s.Contains("EXTF", TString::kIgnoreCase) || !EXT )){ //not forced exteded-alg requested (or exteded-data missing)
2674    
2675            if( s.Contains("NUC")){
2676                if(
2677                    tsorted_nuc &&
2678                    it < tsorted_nuc->GetEntries() &&                             //enough tracks found
2679                    it >= 0 &&                                                //valid index
2680                    true) return (PamTrack*)((*tsorted_nuc)[it]);                 //ok return the track
2681          }else{          }else{
2682                if(
2683                    tsorted &&
2684                    it < tsorted->GetEntries() &&                             //enough tracks found
2685                    it >= 0 &&                                                //valid index
2686                    true )return (PamTrack*)((*tsorted)[it]);                 //ok return the track
2687            }
2688    
2689        }
2690        
2691    
2692        /////////////////////////////////////////////////////////////////////////
2693        /// if requested get track from extended algorythm output
2694        /////////////////////////////////////////////////////////////////////////
2695        
2696        if(s.Contains("EXT", TString::kIgnoreCase) && EXT){//if exteded-alg requested
2697                    
2698                  cout << "No input file list given."<<endl;          if(s.Contains("NUC")){
2699                  cout << "Check for existing root files."<<endl;              if(
2700  //              cout << "Warking directory: "<< gSystem->WorkingDirectory()<< endl;                  text_nuc &&
2701                                    it < text_nuc->GetEntries() &&                             //enough tracks found
2702                  TSystemDirectory *datadir = new TSystemDirectory(gSystem->BaseName(ddir),ddir);                  it >= 0 &&                                                //valid index
2703                  TList *temp = datadir->GetListOfFiles();                  true) return (PamTrack*)((*text_nuc)[it]);
2704  //              temp->Print();          }else{
2705  //              cout << "*************************************" << endl;              if(
2706                                    text &&
2707                  TIter next(temp);                  it < text->GetEntries() &&                             //enough tracks found
2708                  TSystemFile *questo = 0;                  it >= 0 &&                                                //valid index
2709                                    true) return (PamTrack*)((*text)[it]);
2710            }
2711    
2712        };
2713        
2714        
2715        cout << "PamTrack *PamLevel2::GetTrack("<<it<<","<<alg<<") -- wrong track number or unrecognised algorithm"<<endl;
2716        
2717        return NULL;
2718    
2719    }
2720    ;
2721    TClonesArray *PamLevel2::GetTracks() {
2722    
2723      //  *-*-*-*-*-*-*-*-*-*-*-*-*
2724      SortTracks();
2725      //  *-*-*-*-*-*-*-*-*-*-*-*-*
2726    
2727      return tsorted;
2728    
2729    }
2730    ;
2731    Int_t  PamLevel2::GetNTracks(const char* alg) {
2732    
2733    
2734    //    cout << " trk_nuc_obj->GetEntries() "<<trk_nuc_obj->GetEntries()<<" trk2_nuc_obj->GetNTracks() "<<trk2_nuc_obj->GetNTracks()<<endl;
2735    
2736        TString s(alg);
2737    
2738        if(!s.CompareTo("") || !s.CompareTo("STD"))return trk2_obj->TrkLevel2::GetNTracks(); //standard algorythm
2739            
2740        if(s.Contains("EXTF", TString::kIgnoreCase) && EXT){
2741            if(s.Contains("NUC", TString::kIgnoreCase) && NUC)return trk_ext_nuc_obj->GetEntries();//ok
2742            return trk_ext_obj->GetEntries();//ok
2743        }
2744        if( s.Contains("EXT", TString::kIgnoreCase) && EXT) {
2745            if(s.Contains("NUC", TString::kIgnoreCase) && NUC)
2746                return (trk2_nuc_obj->TrkLevel2::GetNTracks() ?  trk2_nuc_obj->TrkLevel2::GetNTracks() :  trk_ext_nuc_obj->GetEntries() );  
2747            return (trk2_obj->TrkLevel2::GetNTracks() ?  trk2_obj->TrkLevel2::GetNTracks() :  trk_ext_obj->GetEntries() );
2748        }
2749        if(s.Contains("NUC", TString::kIgnoreCase) && NUC )
2750            return trk2_nuc_obj->TrkLevel2::GetNTracks();
2751        
2752        cout << "Int_t  PamLevel2::GetNTracks("<<alg<<") -- unrecognised algorithm"<<endl;
2753    
2754        return 0;
2755    
2756    }
2757    
2758    
2759    //--------------------------------------
2760    //
2761    //
2762    //--------------------------------------
2763    /**
2764     * Retrieves (if present) the image of the it-th Pamela "physical" track, sorted by the method PamLevel2::SortTracks().
2765     * @param it Track number, ranging from 0 to GetNTracks().
2766     */
2767    PamTrack *PamLevel2::GetTrackImageOld(int it) {
2768    
2769      //  *-*-*-*-*-*-*-*-*-*-*-*-*
2770      SortTracks();
2771      //  *-*-*-*-*-*-*-*-*-*-*-*-*
2772      if (!timage)
2773        return 0;
2774      if (!timage->GetEntries())
2775        return 0;
2776    
2777      PamTrack *image = 0;
2778    
2779      if (it >= 0 && it < trk2_obj->TrkLevel2::GetNTracks()) {
2780        TClonesArray &t = *(tsorted);
2781        PamTrack *temp = (PamTrack*) t[it];
2782        if (temp->GetTrkTrack()->HasImage()) {
2783          TClonesArray & t = *(timage);
2784          image = (PamTrack*) t[it];
2785        }
2786        else {
2787          //            cout <<"PamLevel2::GetTrackImage(int) : Track SeqNo "<<it<<" does not have image"<<endl;
2788        };
2789      }
2790      else {
2791        cout << "PamLevel2::GetTrackImageOld(int) : Tracker track SeqNo " << it << " does not exist (GetNTracks() = "
2792            << trk2_obj->TrkLevel2::GetNTracks() << ")" << endl;
2793      };
2794    
2795      return image;
2796    }
2797    /**
2798     * Retrieves (if present) the image of the it-th Pamela "physical" track, sorted by the method PamLevel2::SortTracks().
2799     * @param it Track number, ranging from 0 to GetNTracks().
2800     * @param alg Algorythm, see SetTrakingAlgorythm(char *alg) for explanation.
2801     */
2802    PamTrack *PamLevel2::GetTrackImage(int it, const char* alg) {
2803    
2804        TString s(alg);
2805        if(!s.CompareTo("") || !s.CompareTo("STD"))return GetTrackImageOld(it); //old algorythm
2806    
2807    
2808        SortTracksNew();
2809        // >> fill tsorted, timage and text
2810    
2811        if ( ( !s.Contains("EXTF", TString::kIgnoreCase) || !EXT )){ //not forced exteded-alg requested (or exteded-data missing)
2812    
2813            if( s.Contains("NUC")){
2814                if(
2815                    tsorted_nuc &&
2816                    it < tsorted_nuc->GetEntries() &&                             //enough tracks found
2817                    it >= 0 &&                                                //valid index
2818                    true){
2819                    TClonesArray &t = *(tsorted_nuc);
2820                    PamTrack *temp = (PamTrack*) t[it];
2821                    if (temp->GetTrkTrack()->HasImage()) {
2822                        return (PamTrack*)((*timage_nuc)[it]);                 //ok return the track
2823                    }else{
2824                        return NULL;
2825                    }
2826                                    
2827                  while ( (questo = (TSystemFile*) next()) ) {              }
2828                          TString name =  questo-> GetName();          }else{
2829                          if( name.EndsWith(".root") ){              if(
2830                                  char *fullpath;                  tsorted &&
2831                                  gSystem->IsFileInIncludePath(name,&fullpath);                  it < tsorted->GetEntries() &&                             //enough tracks found
2832                                  contents->Add(new TSystemFile(fullpath,gSystem->DirName(fullpath)));                  it >= 0 &&                                                //valid index
2833                          };                  true ){
2834                    TClonesArray &t = *(tsorted);
2835                    PamTrack *temp = (PamTrack*) t[it];
2836                    if (temp->GetTrkTrack()->HasImage()) {              
2837                        return (PamTrack*)((*timage)[it]);                 //ok return the track
2838                    }else{
2839                        return NULL;
2840                  }                  }
2841                  delete temp;              }
2842                  delete datadir;          }
2843            
2844          };      }
2845          gSystem->ChangeDirectory(wdir); // back to the working directory  
2846  //      cout << endl << "Selected files:" << endl;      cout << "PamTrack *PamLevel2::GetTrackImage("<<it<<","<<alg<<") -- wrong track number or unrecognised algorithm"<<endl;
2847  //      contents->Print();        
2848          cout << contents->GetEntries()<<" files selected\n";      return NULL;
2849  //      cout << endl;  
2850  //      cout << "Working directory: "<< gSystem->WorkingDirectory()<< endl;  }
2851          return contents;  ;
2852  };  
2853    //--------------------------------------
2854    //
2855    //
2856    //--------------------------------------
2857    /**
2858     * Get the Pamela detector trees in a single file and make them friends.
2859     * @param f TFile pointer
2860     * @param detlist String to select trees to be included
2861     * @return Pointer to a TTree
2862     */
2863    TTree *PamLevel2::GetPamTree(TFile *f, TString detlist) {
2864    
2865      if (detlist.Contains("+AUTO", TString::kIgnoreCase)) {
2866        cout << "+AUTO" << endl;
2867        GetWhichTrees(f);
2868      };
2869      SetWhichTrees(detlist);
2870    
2871      if (pam_tree) {
2872        printf("WARNING: TTree *PamLevel2::GetPamTree(TFile *fl, TString detlist) -- pam_tree already exists!\n ");
2873        return pam_tree;
2874      };
2875      //
2876    
2877      cout << "TTree *PamLevel2::GetPamTree(TFile *f, TString detlist ) -- obsolte " << endl;
2878    
2879      //    SetWhichTrees(detlist);
2880    
2881      TTree *Trout = 0;
2882    
2883      TString fname = f->GetName();
2884      if (!CheckLevel2File(fname))
2885        return NULL;
2886    
2887      //    UInt_t *found=0;
2888    
2889      cout << "GetPamTree(TFile*,TString): detector list --> ";
2890      if (TRK1)
2891        cout << "TRK1 ";
2892      if (TRK2)
2893        cout << "TRK2 ";
2894      if (TRKh)
2895        cout << "TRKH ";
2896      if (CAL1)
2897        cout << "CAL1 ";
2898      if (CAL2)
2899        cout << "CAL2 ";
2900      if (TOF)
2901        cout << "TOF ";
2902      if (TRG)
2903        cout << "TRG ";
2904      if (AC)
2905        cout << "AC ";
2906      if (ND)
2907        cout << "ND ";
2908      if (S4)
2909        cout << "S4 ";
2910      if (ORB)
2911        cout << "ORB ";
2912      if (GP)
2913        cout << "GP ";
2914      cout << endl;
2915      if (SELLI && SELLI != 2)
2916        cout << ">>> Found selection-list <<<" << endl; //EMILIANO
2917    
2918      f->cd();
2919    
2920      // Tracker
2921      TTree *T = (TTree*) f->Get("Tracker");
2922      if (T && (TRK2 || TRK1 || TRKh)) {
2923        if (TRK2)
2924          T->SetBranchAddress("TrkLevel2", GetPointerTo("TrkLevel2"));
2925        //  else    T->SetBranchStatus("TrkLevel2",0,found);
2926        if (TRK2)
2927          cout << "Tracker      : set branch address TrkLevel2" << endl;
2928        if (TRK1)
2929          T->SetBranchAddress("TrkLevel1", GetPointerTo("TrkLevel1"));
2930        //  else    T->SetBranchStatus("TrkLevel1",0,found);
2931        if (TRK1)
2932          cout << "Tracker      : set branch address TrkLevel1" << endl;
2933        if (TRKh)
2934          T->SetBranchAddress("TrkHough", GetPointerTo("TrkHough"));
2935        //  else    T->SetBranchStatus("TrkHough",0,found);
2936        if (TRKh)
2937          cout << "Tracker      : set branch address TrkHough" << endl;
2938        if (!Trout)
2939          Trout = T;
2940        else
2941            Trout->AddFriend(T);
2942      }
2943      else {
2944        cout << "Tracker      : missing tree" << endl;
2945      };
2946      // Calorimeter
2947      TTree *C = (TTree*) f->Get("Calorimeter");
2948      if (C && (CAL2 || CAL1)) {
2949        if (CAL2)
2950          C->SetBranchAddress("CaloLevel2", GetPointerTo("CaloLevel2"));
2951        //  else    C->SetBranchStatus("CaloLevel2",0,found);
2952        if (CAL2)
2953          cout << "Calorimeter  : set branch address CaloLevel2" << endl;
2954        if (CAL1)
2955          C->SetBranchAddress("CaloLevel1", GetPointerTo("CaloLevel1"));
2956        //  else    C->SetBranchStatus("CaloLevel1",0,found);
2957        if (CAL1)
2958          cout << "Calorimeter  : set branch address CaloLevel1" << endl;
2959        if (!Trout)
2960          Trout = C;
2961        else
2962          Trout->AddFriend(C);
2963      }
2964      else {
2965        cout << "Calorimeter  : missing tree" << endl;
2966      };
2967    
2968      // ToF
2969      TTree *O = (TTree*) f->Get("ToF");
2970      if (O && TOF) {
2971        O->SetBranchAddress("ToFLevel2", GetPointerTo("ToFLevel2"));
2972        cout << "ToF          : set branch address ToFLevel2" << endl;
2973        if (!Trout)
2974          Trout = O;
2975        else
2976          Trout->AddFriend(O);
2977      }
2978      else {
2979        cout << "ToF         : missing tree" << endl;
2980      };
2981      // Trigger
2982      TTree *R = (TTree*) f->Get("Trigger");
2983      if (R && TRG) {
2984        R->SetBranchAddress("TrigLevel2", GetPointerTo("TrigLevel2"));
2985        cout << "Trigger      : set branch address TrigLevel2" << endl;
2986        if (!Trout)
2987          Trout = R;
2988        else
2989          Trout->AddFriend(R);
2990      }
2991      else {
2992        cout << "Trigger      : missing tree" << endl;
2993      };
2994      // S4
2995      TTree *S = (TTree*) f->Get("S4");
2996      if (S && S4) {
2997        S->SetBranchAddress("S4Level2", GetPointerTo("S4Level2"));
2998        cout << "S4           : set branch address S4Level2" << endl;
2999        if (!Trout)
3000          Trout = S;
3001        else
3002          Trout->AddFriend(S);
3003      }
3004      else {
3005        cout << "S4           : missing tree" << endl;
3006      };
3007      // Neutron Detector
3008      TTree *N = (TTree*) f->Get("NeutronD");
3009      if (N && ND) {
3010        N->SetBranchAddress("NDLevel2", GetPointerTo("NDLevel2"));
3011        cout << "NeutronD     : set branch address NDLevel2" << endl;
3012        if (!Trout)
3013          Trout = N;
3014        else
3015          Trout->AddFriend(N);
3016      }
3017      else {
3018        cout << "NeutronD     : missing tree" << endl;
3019      };
3020      // Anticounters
3021      TTree *A = (TTree*) f->Get("Anticounter");
3022      if (A && AC) {
3023        A->SetBranchAddress("AcLevel2", GetPointerTo("AcLevel2"));
3024        cout << "Anticounter  : set branch address AcLevel2" << endl;
3025        if (!Trout)
3026          Trout = A;
3027        else
3028          Trout->AddFriend(A);
3029      }
3030      else {
3031        cout << "Anticounter  : missing tree" << endl;
3032      };
3033      // Orbital Info
3034      TTree *B = (TTree*) f->Get("OrbitalInfo");
3035      if (B && ORB) {
3036        B->SetBranchAddress("OrbitalInfo", GetPointerTo("OrbitalInfo"));
3037        cout << "OrbitalInfo  : set branch address OrbitalInfo" << endl;
3038        if (!Trout)
3039          Trout = B;
3040        else
3041          Trout->AddFriend(B);
3042      }
3043      else {
3044        cout << "OrbitalInfo  : missing tree" << endl;
3045      };
3046    
3047      // GPamela
3048      TTree *G = (TTree*) f->Get("h20");
3049      if (G && GP) {
3050        if (!gp_obj)
3051          gp_obj = new GPamela();
3052        //      ------------------------------------
3053        //      ATTENZIONE!!!
3054        //      non so per quale arcano motivo,
3055        //      per l'albero di gpamela il branch address lo devo settare
3056        //      DOPO aver fatto friend
3057        //      FGRRRVZZZZUTSALKJMSLKJ!!!
3058        //      ------------------------------------
3059        //  gp_obj->SetBranchAddress(G); //ho dovuto fare in maniera diversa dagli altri
3060        //  cout << "h20          : set branch address GPamela "<<endl;
3061        if (!Trout)
3062          Trout = G;
3063        else
3064          Trout->AddFriend(G);
3065      }
3066      else {
3067        //  cout << "h20          : missing tree"<<endl;
3068      };
3069    
3070      TTree *L = (TTree*) f->Get("SelectionList");
3071      if (L && SELLI == 1) {
3072        cout << " TTree *PamLevel2::GetPamTree(TFile, TString) >>> SelectionList not implemented!!!!" << endl;
3073        sel_tree = 0;
3074      }
3075      else {
3076        cout << "SelectionList  : missing tree" << endl;
3077      };
3078    
3079      cout << endl << " Number of entries: " << Trout->GetEntries() << endl << endl;
3080    
3081      //      ------------------------------------
3082      //      ATTENZIONE!!!
3083      //      non so per quale arcano motivo,
3084      //      per l'albero di gpamela il branch address lo devo settare
3085      //      DOPO aver fatto friend
3086      //      FGRRRVZZZZUTSALKJMSLKJ!!!
3087      //      ------------------------------------
3088      if (G && GP) {
3089        gp_obj->SetBranchAddress(Trout); //ho dovuto fare in maniera diversa dagli altri
3090        cout << "h20          : set branch address GPamela " << endl;
3091      }
3092      else {
3093        cout << "h20          : missing tree" << endl;
3094      };
3095    
3096      pam_tree = (TChain*) Trout;
3097    
3098      return Trout;
3099    
3100    }
3101    //--------------------------------------
3102    //
3103    //
3104    //--------------------------------------
3105    /**
3106     * Get list of Level2 files.
3107     * @param ddir Level2 data directory.
3108     * @param flisttxt Name of txt file containing file list.
3109     * @return Pointer to a TList of TSystemFiles
3110     * If no input file list is given , all the Level2 files inside the directory are processed.
3111     */
3112    TList* PamLevel2::GetListOfLevel2Files(TString ddir, TString flisttxt = "") {
3113    
3114      TString wdir = gSystem->WorkingDirectory();
3115    
3116      if (ddir != "") {
3117        cout << "Level2 data directory : " << ddir << endl;
3118      }
3119      else {
3120        cout << "Level2 data directory not given as input: trying to evaluate from list or taking working directory "
3121            << endl;
3122      };
3123      TList *contents = new TList; // create output list
3124      contents->SetOwner();
3125    
3126      // --------------------------------------
3127      // case 1 : input file/file-list provided
3128      // --------------------------------------
3129      if (flisttxt != "") {
3130    
3131        // --------------------------------------
3132        // a list of files given as input
3133        // --------------------------------------
3134        if (!flisttxt.EndsWith(".root")) {
3135    
3136          TString dir = gSystem->DirName(flisttxt);
3137          //            cout << " List directory "<<dir<<endl;
3138          if (dir == "." || dir == "")
3139            flisttxt = gSystem->ConcatFileName(wdir.Data(), gSystem->BaseName(flisttxt));
3140          //                flisttxt = gSystem->ConcatFileName(gSystem->DirName(flisttxt),gSystem->BaseName(flisttxt));
3141    
3142          if (!gSystem->ChangeDirectory(ddir)) {
3143            cout << "Cannot change directory : " << ddir << endl;
3144            return 0;
3145          }
3146    
3147          cout << "Input file list : " << flisttxt << endl;
3148          ifstream in;
3149          in.open(flisttxt, ios::in); //open input file list
3150          if (!in.good()) {
3151            cout << " TList*  PamLevel2::GetListOfLevel2Files(TString, TString) --> ERROR opening the file " << endl;
3152            gSystem->ChangeDirectory(wdir); // back to the working directory
3153            return 0;
3154          }
3155          int line = 0;
3156          // ...........................
3157          // loop over file-list records
3158          // ...........................
3159          while (1) {
3160            TString file;
3161            in >> file;
3162            if (!in.good())
3163              break;
3164            line++;
3165            cout << "(*) " << file << endl;
3166            if (file.IsNull()) {
3167              cout << "-- list interrupted at line " << line << endl;
3168              break;
3169            }
3170            if (file.Contains("#"))
3171              file = file(0, file.First("#"));
3172            //
3173            // take only root files
3174            //
3175            if (file.EndsWith(".root")) {
3176              TString filedir;
3177              cout << ddir << endl;
3178              if ( ddir != "" ) {
3179                filedir = ddir; // take the input dir
3180              }
3181              else {
3182                gSystem->ChangeDirectory(wdir); // back to the working directory
3183                filedir = gSystem->DirName(file); // this will take the path if exist in the list otherwise it will return automatically the working dir
3184              };
3185              filedir.Append("/");
3186              //          char *fullpath = gSystem->ConcatFileName(gSystem->DirName(filedir), gSystem->BaseName(file));
3187              char *fullpath = gSystem->ConcatFileName(filedir.Data(), gSystem->BaseName(file));
3188              contents->Add(new TSystemFile(fullpath, gSystem->DirName(fullpath)));// add file to the list
3189              cout << fullpath << endl;
3190              delete fullpath;
3191            }
3192            //          }else{
3193            //              if(file.Data()!="")cout << "File: "<<file<<" ---> missing "<< endl;
3194            //          };
3195          };
3196          in.close();
3197          // --------------------------------------
3198          // a single root file given as input
3199          // --------------------------------------
3200        }
3201        else {
3202          if (flisttxt.Contains("#"))
3203            flisttxt = flisttxt(0, flisttxt.First("#"));
3204          char *fullpath = gSystem->ConcatFileName(gSystem->DirName(flisttxt), gSystem->BaseName(flisttxt));
3205          contents->Add(new TSystemFile(fullpath, gSystem->DirName(fullpath)));// add file to the list
3206          delete fullpath;
3207        };
3208        // ---------------------------------------------------------------------------------
3209        // case 2 : no input file/file-list provided --> read all files insede the directory
3210        // ---------------------------------------------------------------------------------
3211      }
3212      else {
3213    
3214        cout << "No input file list given." << endl;
3215        cout << "Check for existing root files." << endl;
3216        //          cout << "Warking directory: "<< gSystem->WorkingDirectory()<< endl;
3217        if (ddir == "") {
3218          ddir = wdir;
3219          cout << "Level2 data directory : " << ddir << endl;
3220        };
3221    
3222        TSystemDirectory *datadir = new TSystemDirectory(gSystem->BaseName(ddir), ddir);
3223        TList *temp = datadir->GetListOfFiles();
3224        if (!temp)
3225          return 0;
3226        //          temp->Print();
3227        //          cout << "*************************************" << endl;
3228    
3229        TIter next(temp);
3230        TSystemFile *questo = 0;
3231    
3232        while ((questo = (TSystemFile*) next())) {
3233          TString name = questo-> GetName();
3234          if (name.EndsWith(".root")) {
3235            //              const char *fullpath = gSystem->FindFile(ddir,name);
3236            //              char *fullpath;
3237            //              gSystem->IsFileInIncludePath(name,&fullpath);
3238            char *fullpath = gSystem->ConcatFileName(gSystem->DirName(ddir), gSystem->BaseName(name));
3239            contents->Add(new TSystemFile(fullpath, gSystem->DirName(fullpath)));
3240            delete fullpath;
3241          };
3242        }
3243        delete temp;
3244        delete datadir;
3245    
3246      };
3247      gSystem->ChangeDirectory(wdir); // back to the working directory
3248      //    cout << endl << "Selected files:" << endl;
3249      //    contents->Print();
3250      cout << contents->GetEntries() << " files \n";
3251      //    cout << endl;
3252      //    cout << "Working directory: "<< gSystem->WorkingDirectory()<< endl;
3253      return contents;
3254    }
3255    ;
3256  //--------------------------------------  //--------------------------------------
3257  //  //
3258  //  //
3259  //--------------------------------------  //--------------------------------------
3260  /**  /**
3261   * Get the Pamela detector chains from a list of files and make them friends.   * Get the Pamela detector chains from a list of files and make them friends.
3262   * @param fl Pointer to a TList of TSystemFiles   * @param fl Pointer to a TList of TSystemFiles
3263   * @param detlist String to select trees to be included   * @param detlist String to select trees to be included
3264   * @return Pointer to a TChain   * @return Pointer to a TChain
3265   */   */
3266  TChain *PamLevel2::GetPamTree(TList *fl, TString detlist="+ALL"){  TChain *PamLevel2::GetPamTree(TList *fl, TString detlist) {
3267      //
3268      //
3269      //
3270      if (pam_tree) {
3271        printf("WARNING: TChain *PamLevel2::GetPamTree(TList *fl, TString detlist) -- pam_tree already exists!\n ");
3272        return pam_tree;
3273      };
3274      //
3275    
3276  //      TChain *Tout=0;    TChain *Trout = 0;
3277          if(Tout)Tout->Delete();  
3278          Tout = NULL;    // -------------------------------------------
3279              // set flags to include/exclude trees/branches
3280          SetWhichTrees(detlist);    // -------------------------------------------
3281              if (detlist.Contains("+AUTO", TString::kIgnoreCase)) {
3282          TChain *T = 0;        if (fl->GetEntries() > 0) {
3283          TChain *C = 0;        cout << "+AUTO" << endl;
3284          TChain *O = 0;        TFile *fprimo = new TFile(fl->At(0)->GetName());
3285          TChain *R = 0;        GetWhichTrees(fprimo);
3286          TChain *S = 0;        fprimo->Close();// AAAAARGGGGGHHHHH!!!!!!! non commentare questa riga, altrimenti si incasina il TChain
3287          TChain *N = 0;        fprimo->Delete();
3288          TChain *A = 0;      }
3289          TChain *B = 0;    };
3290              SetWhichTrees(detlist);
3291          if(TRK) T = new TChain("Tracker");        
3292          if(CAL) C = new TChain("Calorimeter");    // -------------------------------------------
3293          if(TOF) O = new TChain("ToF");    // build chains
3294          if(TRG) R = new TChain("Trigger");    // -------------------------------------------
3295          if(S4)  S = new TChain("S4");    TChain *T = 0;
3296          if(ND)  N = new TChain("NeutronD");    TChain *C = 0;
3297          if(AC)  A = new TChain("Anticounter");    TChain *O = 0;
3298          if(ORB) B = new TChain("OrbitalInfo");    TChain *R = 0;
3299              TChain *S = 0;
3300          // loop over files and create chains        TChain *N = 0;
3301          TIter next(fl);    TChain *A = 0;
3302          TSystemFile *questo = 0;    TChain *B = 0;
3303          while ( (questo = (TSystemFile*) next()) ) {    TChain *G = 0;
3304                  TString name =  questo->GetName();  
3305  //              cout << "File: "<< name << endl;    TChain *L = 0;
3306                  if( CheckLevel2File(name) ){  
3307                          if(TRK) T->Add(name);    if (TRK2 || TRK1 || TRKh)
3308                          if(CAL) C->Add(name);      T = new TChain("Tracker");
3309                          if(TOF) O->Add(name);    if (CAL2 || CAL1)
3310                          if(TRG) R->Add(name);      C = new TChain("Calorimeter");
3311                          if(S4)  S->Add(name);    if (TOF)
3312                          if(ND)  N->Add(name);      O = new TChain("ToF");
3313                          if(AC)  A->Add(name);    if (TRG)
3314                          if(ORB) B->Add(name);      R = new TChain("Trigger");
3315                  };    if (S4)
3316          }      S = new TChain("S4");
3317                      if (ND)
3318              // Tracker      N = new TChain("NeutronD");
3319          if(TRK) if(!Tout)Tout=T;    if (AC)
3320        A = new TChain("Anticounter");
3321      if (ORB)
3322        B = new TChain("OrbitalInfo");
3323      if (GP)
3324        G = new TChain("h20");
3325      L = new TChain("SelectionList");
3326    
3327      // loop over files and create chains
3328      TIter next(fl);
3329      TSystemFile *questo = 0;
3330      while ((questo = (TSystemFile*) next())) {
3331        TString name = questo->GetName();
3332        cout << "File: " << name << endl;
3333        if (CheckLevel2File(name)) {
3334          if (TRK2 || TRK1 || TRKh)
3335            T->Add(name);
3336          if (CAL1 || CAL2)
3337            C->Add(name);
3338          if (TOF)
3339            O->Add(name);
3340          if (TRG)
3341            R->Add(name);
3342          if (S4)
3343            S->Add(name);
3344          if (ND)
3345            N->Add(name);
3346          if (AC)
3347            A->Add(name);
3348          if (ORB)
3349            B->Add(name);
3350          if (GP)
3351            G->Add(name);
3352          if (SELLI == 1)
3353            L->Add(name);
3354         };
3355      };
3356    
3357      cout << "done data-tree chains  "<<  T->GetNtrees() <<" \n";
3358      cout << "----------------------------------------------------" << endl;
3359    
3360      // -------------------------------------------
3361      // make friends
3362      // -------------------------------------------
3363    
3364      // Tracker
3365      cout << "Friends: " << endl;
3366      if (T && (TRK2 || TRK1 || TRKh)) {
3367        if (!Trout)
3368          Trout = T;
3369        else
3370          Trout->AddFriend("Tracker");
3371        //  cout << "+Tacker"<<endl;
3372      };
3373      // Calorimeter
3374      if (C && (CAL2 || CAL1)) {
3375        if (!Trout)
3376          Trout = C;
3377        else
3378          Trout->AddFriend("Calorimeter");
3379        //  cout << "+Calorimeter"<<endl;
3380      };
3381      // ToF
3382      if (O && TOF) {
3383        if (!Trout)
3384          Trout = O;
3385        else
3386          Trout->AddFriend("ToF");
3387        //  cout << "+ToF"<<endl;
3388      };
3389      // Trigger
3390      if (R && TRG) {
3391        if (!Trout)
3392          Trout = O;
3393        else
3394          Trout->AddFriend("Trigger");
3395        //  cout << "+Trigger"<<endl;
3396      };
3397      // S4
3398      if (S && S4) {
3399        if (!Trout)
3400          Trout = O;
3401        else
3402          Trout->AddFriend("S4");
3403        //  cout << "+S4"<<endl;
3404      };
3405      // Neutron Detector
3406      if (N && ND) {
3407        if (!Trout)
3408          Trout = O;
3409        else
3410          Trout->AddFriend("NeutronD");
3411        //  cout << "+NeutronD"<<endl;
3412      };
3413      // Anticounters
3414      if (A && AC) {
3415        if (!Trout)
3416          Trout = O;
3417        else
3418          Trout->AddFriend("Anticounter");
3419        //  cout << "+Anticounter"<<endl;
3420      };
3421      // Orbital Info
3422      if (B && ORB) {
3423        if (!Trout)
3424          Trout = O;
3425        else
3426          Trout->AddFriend("OrbitalInfo");
3427        //  cout << "+OrbitalInfo"<<endl;
3428      };
3429      // GPamela
3430      if (G && GP) {
3431        if (!Trout)
3432          Trout = G;
3433        else
3434          Trout->AddFriend("h20");
3435        //  cout << "+h20"<<endl;
3436      };
3437    
3438      //  =====================================
3439      //  SET BRANCH-ADDRESS AFTER CHAIN+FRIEND
3440      //  =====================================
3441      if( Trout->GetNtrees() )SetBranchAddress(Trout);
3442    
3443      //  ------------------------------------
3444      //  finally handle selection trees...
3445      //  (it is not friend of pamela tree)
3446      //  ------------------------------------
3447    
3448      cout << "----------------------------------------------------" << endl;
3449    
3450      // Selection List
3451      if (L && SELLI == 1) {
3452        cout << ">>> Found selection-list <<<" << endl;
3453        //  L->SetBranchAddress("RunEntry",&irun);
3454        L->SetBranchAddress("RunEntry", &irunt);//NEWNEW
3455        cout << "SelectionList: set branch address RunEntry" << endl;
3456        L->SetBranchAddress("EventEntry", &irunentry);
3457        cout << "SelectionList: set branch address EventEntry" << endl;
3458        /*    if ( L->GetBranch("L0EventEntry") ){
3459          hasL0EE = true;
3460          L->SetBranchAddress("L0EventEntry", &il0entry);
3461          cout << "SelectionList: set branch address L0EventEntry" << endl;
3462        } else {
3463          hasL0EE = false; // backward compatibility with old preselected files...
3464          }*/
3465        sel_tree = L;
3466        //          if(!Trout)Trout=O;
3467        //          else Trout->AddFriend("SelectionList");
3468        cout << "+SelectionList" << endl;
3469        cout << "----------------------------------------------------" << endl;
3470      }
3471      else {
3472        //  cout << "SelectionList  : missing tree"<<endl;
3473        if (L)
3474          L->Delete();
3475      };
3476    
3477      //  --------------------------------------------
3478      //  return the pamela chain with all the friends
3479      //  --------------------------------------------
3480    
3481      pam_tree = Trout;
3482    
3483      return Trout;
3484    }
3485    
3486    //--------------------------------------
3487    //
3488    //
3489    //--------------------------------------
3490    /**
3491     * Set branch addresses for Pamela friend trees
3492     */
3493    void PamLevel2::SetBranchAddress(TTree *t) {
3494    
3495    //   TRK2 = TRK2 & t->GetBranchStatus("TrkLevel2");
3496    //   TRK1 = TRK1 & t->GetBranchStatus("TrkLevel1");
3497    //   TRKh = TRKh & t->GetBranchStatus("TrkHough");
3498    //   CAL2 = CAL2 & t->GetBranchStatus("CaloLevel2");
3499    //   CAL1 = CAL1 & t->GetBranchStatus("CaloLevel1");
3500    //   TOF = TOF & t->GetBranchStatus("ToFLevel2");
3501    //   TRG = TRG & t->GetBranchStatus("TrigLevel2");
3502    //   S4 = S4 & t->GetBranchStatus("S4Level2");
3503    //   ND = ND & t->GetBranchStatus("NDLevel2");
3504    //   AC = AC & t->GetBranchStatus("AcLevel2");
3505    //   ORB = ORB & t->GetBranchStatus("OrbitalInfo");
3506    //   GP = GP & t->GetBranchStatus("h20");
3507    
3508    
3509      // Tracker
3510      if (TRK1) {
3511        t->SetBranchAddress("TrkLevel1", GetPointerTo("TrkLevel2"));
3512        cout << "Tracker      : set branch address TrkLevel1" << endl;
3513      };
3514      if (TRK2) {
3515        t->SetBranchAddress("TrkLevel2", GetPointerTo("TrkLevel1"));
3516        cout << "Tracker      : set branch address TrkLevel2" << endl;
3517        NUC = t->GetBranchStatus("TrackNuclei");
3518        EXT = t->GetBranchStatus("RecoveredTrack") && (NUC ? t->GetBranchStatus("RecoveredTrackNuclei"): true );    
3519      };
3520      if (TRKh) {
3521        t->SetBranchAddress("TrkHough", GetPointerTo("TrkHough"));
3522        cout << "Tracker      : set branch address TrkHough" << endl;
3523      };
3524    
3525      // Calorimeter
3526      if (CAL1) {
3527        t->SetBranchAddress("CaloLevel1", GetPointerTo("CaloLevel1"));
3528        cout << "Calorimeter  : set branch address CaloLevel1" << endl;
3529      };
3530      if (CAL2) {
3531        t->SetBranchAddress("CaloLevel2", GetPointerTo("CaloLevel2"));
3532        cout << "Calorimeter  : set branch address CaloLevel2" << endl;
3533      };
3534    
3535      // ToF
3536      if (TOF) {
3537        t->SetBranchAddress("ToFLevel2", GetPointerTo("ToFLevel2"));
3538        cout << "ToF          : set branch address ToFLevel2" << endl;
3539      };
3540      // Trigger
3541      if (TRG) {
3542        t->SetBranchAddress("TrigLevel2", GetPointerTo("TrigLevel2"));
3543        cout << "Trigger      : set branch address TrigLevel2" << endl;
3544      };
3545      // S4
3546      if (S4) {
3547        t->SetBranchAddress("S4Level2", GetPointerTo("S4Level2"));
3548        cout << "S4           : set branch address S4Level2" << endl;
3549      };
3550      // Neutron Detector
3551      if (ND) {
3552        t->SetBranchAddress("NDLevel2", GetPointerTo("NDLevel2"));
3553        cout << "NeutronD     : set branch address NDLevel2" << endl;
3554      };
3555      // Anticounters
3556      if (AC) {
3557        t->SetBranchAddress("AcLevel2", GetPointerTo("AcLevel2"));
3558        cout << "Anticounter  : set branch address AcLevel2" << endl;
3559      };
3560      // OrbitalInfo
3561      if (ORB) {
3562        t->SetBranchAddress("OrbitalInfo", GetPointerTo("OrbitalInfo"));
3563        cout << "OrbitalInfo  : set branch address OrbitalInfo" << endl;
3564      };
3565      // GPamela
3566      if (GP) {
3567        //  GetPointerTo("GPamela");
3568        if (!gp_obj)
3569          gp_obj = new GPamela();
3570        //  gp_obj->SetBranchAddress(t); //ho dovuto fare in maniera diversa dagli altri
3571        // //       t->SetBranchAddress("GPamela", GetPointerTo("GPamela"));
3572        if (SELLI)
3573          t->SetBranchAddress("GPamela", GetPointerTo("GPamela"));
3574        else
3575          gp_obj->SetBranchAddress(t); //ho dovuto fare in maniera diversa dagli altri
3576    
3577        cout << "h20          : set branch address GPamela " << endl;
3578      };
3579      if(NUC){
3580          
3581          cout << "Found nuclei-track branches" << endl;
3582    
3583          if( !trk_nuc_obj )trk_nuc_obj = new TClonesArray("TrkTrack");
3584          if( !calo_nuc_obj)calo_nuc_obj= new TClonesArray("CaloTrkVar");
3585          if( !tof_nuc_obj)tof_nuc_obj= new TClonesArray("ToFTrkVar");
3586          if( !orb_nuc_obj)orb_nuc_obj= new TClonesArray("OrbitalInfoTrkVar");
3587          if (TRK2)t->                          SetBranchAddress("TrackNuclei",&trk_nuc_obj);
3588          if (CAL2)t->GetFriend("Calorimeter")->SetBranchAddress("TrackNuclei",&calo_nuc_obj);
3589          if (TOF )t->GetFriend("ToF")->        SetBranchAddress("TrackNuclei",&tof_nuc_obj);
3590          if (ORB )t->GetFriend("OrbitalInfo")->SetBranchAddress("TrackNuclei",&orb_nuc_obj);
3591    
3592          ///copy the vector content inside a "fake" object (all aother info are missing)    
3593    
3594          if( !trk2_nuc_obj )trk2_nuc_obj =  new TrkLevel2();
3595          if( !calo2_nuc_obj )calo2_nuc_obj =  new CaloLevel2();
3596          if( !tof2_nuc_obj )tof2_nuc_obj =  new ToFLevel2();
3597          if( !orb2_nuc_obj )orb2_nuc_obj =  new OrbitalInfo();
3598    //       *(trk2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*trk_nuc_obj);
3599    //       *(calo2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*calo_nuc_obj);
3600    //       *(tof2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*tof_nuc_obj);
3601    //       *(orb2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*orb_nuc_obj);
3602    
3603          trk2_nuc_obj->SetTrackArray(  trk_nuc_obj  );
3604          calo2_nuc_obj->SetTrackArray( calo_nuc_obj );
3605          tof2_nuc_obj->SetTrackArray(  tof_nuc_obj  );
3606          orb2_nuc_obj->SetTrackArray(  orb_nuc_obj  );
3607    
3608          
3609      }    
3610    
3611      if(EXT){
3612          
3613          cout << "Found extended tracking algorythm branches" << endl;
3614    
3615          if( !trk_ext_obj )trk_ext_obj = new TClonesArray("ExtTrack");
3616          if( !calo_ext_obj)calo_ext_obj= new TClonesArray("CaloTrkVar");
3617          if( !tof_ext_obj)tof_ext_obj= new TClonesArray("ToFTrkVar");
3618          if( !orb_ext_obj)orb_ext_obj= new TClonesArray("OrbitalInfoTrkVar");
3619          
3620          if (TRK2)t->                          SetBranchAddress("RecoveredTrack",&trk_ext_obj);
3621          if (CAL2)t->GetFriend("Calorimeter")->SetBranchAddress("RecoveredTrack",&calo_ext_obj);
3622          if (TOF )t->GetFriend("ToF")->        SetBranchAddress("RecoveredTrack",&tof_ext_obj);
3623          if (ORB )t->GetFriend("OrbitalInfo")->SetBranchAddress("RecoveredTrack",&orb_ext_obj);
3624    
3625        
3626          if(NUC){
3627              if( !trk_ext_nuc_obj )trk_ext_nuc_obj = new TClonesArray("ExtTrack");
3628              if( !calo_ext_nuc_obj)calo_ext_nuc_obj= new TClonesArray("CaloTrkVar");
3629              if( !tof_ext_nuc_obj)tof_ext_nuc_obj= new TClonesArray("ToFTrkVar");
3630              if( !orb_ext_nuc_obj)orb_ext_nuc_obj= new TClonesArray("OrbitalInfoTrkVar");
3631              if (TRK2)t->                          SetBranchAddress("RecoveredTrackNuclei",&trk_ext_nuc_obj);
3632              if (CAL2)t->GetFriend("Calorimeter")->SetBranchAddress("RecoveredTrackNuclei",&calo_ext_nuc_obj);
3633              if (TOF )t->GetFriend("ToF")->        SetBranchAddress("RecoveredTrackNuclei",&tof_ext_nuc_obj);
3634              if (ORB )t->GetFriend("OrbitalInfo")->SetBranchAddress("RecoveredTrackNuclei",&orb_ext_nuc_obj);
3635          }
3636      }    
3637    }
3638    /**
3639     * Set branch addresses for Pamela friend trees
3640     */
3641    void PamLevel2::SetBranchAddress(TChain *t) {
3642    
3643      //     TRK2    = TRK2 & t->GetBranchStatus("TrkLevel2");
3644      //     TRK1    = TRK1 & t->GetBranchStatus("TrkLevel1");
3645      //     TRKh    = TRKh & t->GetBranchStatus("TrkHough");
3646      //     CAL1    = CAL1 & t->GetBranchStatus("CaloLevel1");
3647      //     CAL2    = CAL2 & t->GetBranchStatus("CaloLevel2");
3648      //     TOF    = TOF & t->GetBranchStatus("ToFLevel2");
3649      //     TRG    = TRG & t->GetBranchStatus("TrigLevel2");
3650      //     S4     = S4  & t->GetBranchStatus("S4Level2");
3651      //     ND     = ND  & t->GetBranchStatus("NDLevel2");
3652      //     AC     = AC  & t->GetBranchStatus("AcLevel2");
3653      //     ORB    = ORB & t->GetBranchStatus("OrbitalInfo");
3654      //    GP     = GP & t->GetBranchStatus("h20");
3655    
3656      // Tracker
3657      if (TRK2) {
3658        t->SetBranchAddress("TrkLevel2", GetPointerTo("TrkLevel2"));
3659        cout << "Tracker      : set branch address TrkLevel2" << endl;
3660        NUC = t->GetBranchStatus("TrackNuclei");
3661        EXT = t->GetBranchStatus("RecoveredTrack") && (NUC ? t->GetBranchStatus("RecoveredTrackNuclei"): true );
3662      };
3663      if (TRK1) {
3664        t->SetBranchAddress("TrkLevel1", GetPointerTo("TrkLevel1"));
3665        cout << "Tracker      : set branch address TrkLevel1" << endl;
3666      };
3667      if (TRKh) {
3668        t->SetBranchAddress("TrkHough", GetPointerTo("TrkHough"));
3669        cout << "Tracker      : set branch address TrkHough" << endl;
3670      };
3671    
3672      // Calorimeter
3673      if (CAL2) {
3674        t->SetBranchAddress("CaloLevel2", GetPointerTo("CaloLevel2"));
3675        cout << "Calorimeter  : set branch address CaloLevel2" << endl;    
3676      };
3677      if (CAL1) {
3678        t->SetBranchAddress("CaloLevel1", GetPointerTo("CaloLevel1"));
3679        cout << "Calorimeter  : set branch address CaloLevel1" << endl;
3680      };
3681    
3682      // ToF
3683      if (TOF) {
3684        t->SetBranchAddress("ToFLevel2", GetPointerTo("ToFLevel2"));
3685        cout << "ToF          : set branch address ToFLevel2" << endl;
3686      };
3687      // Trigger
3688      if (TRG) {
3689        t->SetBranchAddress("TrigLevel2", GetPointerTo("TrigLevel2"));
3690        cout << "Trigger      : set branch address TrigLevel2" << endl;
3691      };
3692      // S4
3693      if (S4) {
3694        t->SetBranchAddress("S4Level2", GetPointerTo("S4Level2"));
3695        cout << "S4           : set branch address S4Level2" << endl;
3696      };
3697      // Neutron Detector
3698      if (ND) {
3699        t->SetBranchAddress("NDLevel2", GetPointerTo("NDLevel2"));
3700        cout << "NeutronD     : set branch address NDLevel2" << endl;
3701      };
3702      // Anticounters
3703      if (AC) {
3704        t->SetBranchAddress("AcLevel2", GetPointerTo("AcLevel2"));
3705        cout << "Anticounter  : set branch address AcLevel2" << endl;
3706      };
3707      // OrbitalInfo
3708      if (ORB) {
3709        t->SetBranchAddress("OrbitalInfo", GetPointerTo("OrbitalInfo"));
3710        cout << "OrbitalInfo  : set branch address OrbitalInfo" << endl;
3711      };
3712      // GPamela
3713      //    cout <<"GP "<<GP<<endl;
3714      if (GP) {
3715        //  GetPointerTo("GPamela");
3716        if (!gp_obj)
3717          gp_obj = new GPamela();
3718        if (SELLI)
3719          t->SetBranchAddress("GPamela", GetPointerTo("GPamela"));
3720        else
3721          gp_obj->SetBranchAddress(t); //ho dovuto fare in maniera diversa dagli altri
3722        //  gp_obj->SetBranchAddress(t); //ho dovuto fare in maniera diversa dagli altri
3723        cout << "h20          : set branch address GPamela " << endl;
3724      };
3725      // SelectionList
3726      //     if(SELLI==1){
3727      //    t->SetBranchAddress("RunEntry",&irunt);//NEWNEW
3728      //    cout << "SelectionList: set branch address RunEntry"<<endl;
3729      //    t->SetBranchAddress("EventEntry",&irunentry);
3730      //    cout << "SelectionList: set branch address EventEntry"<<endl;
3731    
3732      //     }
3733      if(NUC){
3734          
3735          cout << "Found nuclei-track branches" << endl;
3736    
3737          if( !trk_nuc_obj )trk_nuc_obj = new TClonesArray("TrkTrack");
3738          if( !calo_nuc_obj)calo_nuc_obj= new TClonesArray("CaloTrkVar");
3739          if( !tof_nuc_obj)tof_nuc_obj= new TClonesArray("ToFTrkVar");
3740          if( !orb_nuc_obj)orb_nuc_obj= new TClonesArray("OrbitalInfoTrkVar");
3741          if (TRK2)t->                          SetBranchAddress("TrackNuclei",&trk_nuc_obj);
3742          if (CAL2)t->GetFriend("Calorimeter")->SetBranchAddress("TrackNuclei",&calo_nuc_obj);
3743          if (TOF )t->GetFriend("ToF")->        SetBranchAddress("TrackNuclei",&tof_nuc_obj);
3744          if (ORB )t->GetFriend("OrbitalInfo")->SetBranchAddress("TrackNuclei",&orb_nuc_obj);
3745          
3746          ///copy the vector content inside a "fake" object (all aother info are missing)    
3747    
3748          if( !trk2_nuc_obj )trk2_nuc_obj =  new TrkLevel2();
3749          if( !calo2_nuc_obj )calo2_nuc_obj =  new CaloLevel2();
3750          if( !tof2_nuc_obj )tof2_nuc_obj =  new ToFLevel2();
3751          if( !orb2_nuc_obj )orb2_nuc_obj =  new OrbitalInfo();
3752    
3753    //       *(trk2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*trk_nuc_obj);
3754    //       *(calo2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*calo_nuc_obj);
3755    //       *(tof2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*tof_nuc_obj);
3756    //       *(orb2_nuc_obj->GetPointerToTrackArray()) = new TClonesArray(*orb_nuc_obj);
3757          trk2_nuc_obj->SetTrackArray(  trk_nuc_obj  );
3758          calo2_nuc_obj->SetTrackArray( calo_nuc_obj );
3759          tof2_nuc_obj->SetTrackArray(  tof_nuc_obj  );
3760          orb2_nuc_obj->SetTrackArray(  orb_nuc_obj  );
3761    
3762      }    
3763      if(EXT){
3764          
3765          cout << "Found extended tracking algorythm branches" << endl;
3766    
3767          t->SetBranchAddress("extAlgFlag",&extAlgFlag);
3768    
3769          if( !trk_ext_obj )trk_ext_obj = new TClonesArray("ExtTrack");
3770          if( !calo_ext_obj)calo_ext_obj= new TClonesArray("CaloTrkVar");
3771          if( !tof_ext_obj)tof_ext_obj= new TClonesArray("ToFTrkVar");
3772          if( !orb_ext_obj)orb_ext_obj= new TClonesArray("OrbitalInfoTrkVar");
3773          
3774          if (TRK2)t->                          SetBranchAddress("RecoveredTrack",&trk_ext_obj);
3775          if (CAL2)t->GetFriend("Calorimeter")->SetBranchAddress("RecoveredTrack",&calo_ext_obj);
3776          if (TOF )t->GetFriend("ToF")->        SetBranchAddress("RecoveredTrack",&tof_ext_obj);
3777          if (ORB )t->GetFriend("OrbitalInfo")->SetBranchAddress("RecoveredTrack",&orb_ext_obj);
3778          
3779          if(NUC){
3780              if( !trk_ext_nuc_obj )trk_ext_nuc_obj = new TClonesArray("ExtTrack");
3781              if( !calo_ext_nuc_obj)calo_ext_nuc_obj= new TClonesArray("CaloTrkVar");
3782              if( !tof_ext_nuc_obj)tof_ext_nuc_obj= new TClonesArray("ToFTrkVar");
3783              if( !orb_ext_nuc_obj)orb_ext_nuc_obj= new TClonesArray("OrbitalInfoTrkVar");
3784              if (TRK2)t->                          SetBranchAddress("RecoveredTrackNuclei",&trk_ext_nuc_obj);
3785              if (CAL2)t->GetFriend("Calorimeter")->SetBranchAddress("RecoveredTrackNuclei",&calo_ext_nuc_obj);
3786              if (TOF )t->GetFriend("ToF")->        SetBranchAddress("RecoveredTrackNuclei",&tof_ext_nuc_obj);
3787              if (ORB )t->GetFriend("OrbitalInfo")->SetBranchAddress("RecoveredTrackNuclei",&orb_ext_nuc_obj);
3788          }
3789      }    
3790      
3791    }
3792    
3793    /**
3794     * Set the tracking algorythm
3795     * @param alg String to choose the track.
3796     * "" --> take the output of the standard tracking algorythm
3797     * "STD" --> take the output of the standard tracking algorythm
3798     * "NUC" --> take the output of the standard tracking algorythm for nuclei cluster selection
3799     * "EXT" --> in case the standard tracking algorythm has not found any track, take the output of the extended one
3800     * "EXTF" --> force the extended tracking algorythm
3801     * "NUCEXT" --> as "EXT", but for nuclei
3802     * "NUCEXTF" --> as "EXTF", but for nuclei
3803     */
3804    // void PamLevel2::SetTrackingAlgorythm(const char *alg){
3805    
3806    
3807    //     TString s(alg);
3808    //     if(s.Contains("NUC", TString::kIgnoreCase) && !NUC)
3809    //      cout << "Warning! NUC algorythm requested, but branches are missing"<<endl;
3810    //     if(s.Contains("EXT", TString::kIgnoreCase) && !EXT)
3811    //      cout << "Warning! EXT algorythm requested, but branches are missing"<<endl;;
3812                            
3813          // Calorimeter  //     trkAlg = alg;
3814          if(CAL) {                
3815                  if(!Tout)Tout=C;  // };
3816                  else Tout->AddFriend("Calorimeter");  // const char* PamLevel2::GetTrackingAlgorythm(){
3817          };  
3818            
3819      // ToF      //     cout<<endl<<" Implemented tracking algorythm: ";
3820          if(TOF) {  //     cout<<endl<<"  \"\" or \"STD\"  --> take the output of the standard tracking algorythm";
3821                  if(!Tout)Tout=O;  //     cout<<endl<<"  \"NUC\"      --> take the output of the standard tracking algorythm for nuclei cluster selection";
3822                  else Tout->AddFriend("ToF");  //     cout<<endl<<"  \"EXT\"      --> in case the standard tracking algorythm has not found any track,";
3823          };  //     cout<<endl<<"                 take the output of the extended one";
3824      // Trigger  //     cout<<endl<<"  \"EXTF\"     --> force the extended tracking algorythm";
3825          if(TRG) {  //     cout<<endl<<"  \"NUCEXT\"   --> as \"EXT\", but for nuclei ";
3826                  if(!Tout)Tout=O;  //     cout<<endl<<"  \"NUCEXTF\"  --> as \"EXTF\", but for nuclei";
3827                  else Tout->AddFriend("Trigger");  
3828          };  //     cout<<endl;
3829      // S4  //     cout<<" <<Currently set algorythm>> "<<trkAlg<<endl;
3830          if(S4) {  //     cout<<endl;
3831                  if(!Tout)Tout=O;  
3832                  else Tout->AddFriend("S4");  //     return trkAlg;
3833          };  // };
3834      // Neutron Detector  
3835          if(ND) {  
3836                  if(!Tout)Tout=O;  
3837                  else Tout->AddFriend("NeutronD");  //--------------------------------------
3838          };  //
3839      // Anticounters  //
3840          if(AC) {  //--------------------------------------
3841                  if(!Tout)Tout=O;  /**
3842                  else Tout->AddFriend("Anticounter");   * Get the Run tree chain from a list of files.
3843          };   * @param fl Pointer to a TList of TSystemFiles
3844      // OrbitalInfo   * @return Pointer to a TChain
3845          if(ORB) {   */
3846                  if(!Tout)Tout=O;  TChain *PamLevel2::GetRunTree(TList *fl) {
3847                  else Tout->AddFriend("OrbitalInfo");    //
3848          };    //
3849              //
3850          cout<<endl<<" Number of entries: "<<Tout->GetEntries()<<endl<<endl;    if (run_tree) {
3851                printf("WARNING: TChain *PamLevel2::GetRunTree(TList *fl) -- run_tree already exists!\n ");
3852          PamLevel2::SetBranchAddress();      return run_tree;
3853              };
3854          return Tout;    //
3855    
3856    
3857      TChain *R = new TChain("Run");
3858    
3859      // loop over files and create chains
3860      TIter next(fl);
3861      TSystemFile *questo = 0;
3862      while ((questo = (TSystemFile*) next())) {
3863        TString name = questo->GetName();
3864        //          cout << "File: "<< name << endl;
3865        if (CheckLevel2File(name)) {
3866          R->Add(name);
3867        };
3868      }
3869    
3870      cout << "done run chain  "<<  R->GetNtrees() <<" \n";
3871    
3872    
3873      if (RUN && R->GetNtrees()) {
3874    
3875        R->SetBranchAddress("RunInfo", GetPointerTo("RunInfo"));
3876        cout << "Run         : set branch address RunInfo" << endl;
3877        R->SetBranchAddress("SoftInfo", GetPointerTo("SoftInfo")); // Emiliano
3878        cout << "Software    : set branch address SoftInfo" << endl; // Emiliano
3879    
3880        irunoffset = new int[R->GetNtrees()];
3881        if (DBG) {
3882          cout << "----------------------------------------------------" << endl;
3883          cout << "irun\t | ";
3884          cout << "tree\t |";
3885          //        cout << "offset\t |";
3886          cout << "RUN\t";
3887          cout << "FRAG\t";
3888          cout << "NEVENTS\t";
3889          cout << "absolute time\t\t\t";
3890          cout << "on-board time";
3891          cout << endl;
3892        }
3893        for (Int_t ii = 0; ii < R->GetEntries(); ii++) {
3894          R->GetEntry(ii);
3895          if (DBG) {
3896            cout << ii << "\t | ";
3897            cout << R->GetTreeNumber() << "\t |";
3898            //          cout << R->GetChainOffset()<< "\t |";
3899            cout << GetRunInfo()->ID << "\t";
3900            cout << GetRunInfo()->ID_RUN_FRAG << "\t";
3901            cout << GetRunInfo()->NEVENTS << "\t";
3902            cout << GetRunInfo()->RUNHEADER_TIME << " <---> " << GetRunInfo()->RUNTRAILER_TIME << "\t";
3903            cout << GetRunInfo()->RUNHEADER_OBT << " <---> " << GetRunInfo()->RUNTRAILER_OBT << "\t";
3904            cout << endl;
3905          }
3906          irunoffset[R->GetTreeNumber()] = R->GetChainOffset();
3907        }
3908        cout << "N.run = " << R->GetEntries() << endl;
3909        cout << "----------------------------------------------------" << endl;
3910    
3911      }
3912    //   else {
3913    //     delete R;
3914    //     R = 0;
3915    //   }
3916    
3917      run_tree = R;
3918    
3919      return R;
3920    
3921    }
3922    //--------------------------------------
3923    //
3924    //
3925    //--------------------------------------
3926    /**
3927     * Get the Run tree  from a file.
3928     * @param f Pointer to a TFile
3929     * @return Pointer to a TTree
3930     */
3931    TTree *PamLevel2::GetRunTree(TFile *f) {
3932      if (run_tree) {
3933        printf("WARNING: TTree *PamLevel2::GetRunTree(TFile *f) -- run_tree already exists!\n ");
3934        return run_tree;
3935      };
3936    
3937      cout << "TTree *PamLevel2::GetRunTree(TFile *f) -- obsolte " << endl;
3938    
3939      TTree *T = (TTree*) f->Get("Run");
3940    
3941      if (T) {
3942        T->SetBranchAddress("RunInfo", GetPointerTo("RunInfo"));
3943        cout << "Run         : set branch address RunInfo" << endl;
3944        T->SetBranchAddress("SoftInfo", GetPointerTo("SoftInfo")); // Emiliano
3945        cout << "Software    : set branch address SoftInfo" << endl; // Emiliano
3946    
3947      }
3948    
3949      run_tree = (TChain*) T;
3950    
3951      return T;
3952    
3953    }
3954    
3955    Bool_t PamLevel2::UpdateRunInfo(Long64_t iev) {
3956    
3957      if (DBG) printf("PamLevel2::UpdateRunInfo(Long64_t) - inside\n");
3958    
3959      if (!run_tree) {
3960        cout << " Bool_t PamLevel2::UpdateRunInfo(ULong64_t iev) -- ERROR -- run tree not loaded" << endl;
3961        return false;
3962      }
3963      if (run_tree->GetEntries() <= 0) {
3964        cout << " Bool_t PamLevel2::UpdateRunInfo(ULong64_t iev) -- ERROR -- run tree is empty" << endl;
3965        return (false);
3966      }
3967    
3968    
3969      Int_t oldrun = irun; // store current run index
3970    
3971      // -----------------------------------------------------------------------
3972      // the first time the routine is called, set run search from the beginning
3973      // -----------------------------------------------------------------------
3974    
3975      if (irun < 0) {
3976        irun = 0LL;
3977        irunt = 0LL;
3978        totrunentry = 0LL;
3979        totrunentrymin = 0LL;
3980        totrunentrymax = 0LL;
3981        irunentry = 0LL;
3982        il0entry = 0LL;
3983        prevshift = 0;
3984        yprevshift = 0;
3985        prevabstime = 0;
3986        prevpktnum = 0;
3987        abstime = 0ULL;
3988        pktnum = 0;
3989        isFragment = false;
3990        run_tree->GetEntry(irun);
3991        if (!GetOrbitalInfo())
3992          cout << "** WARNING ** missing OrbitalInfo ---> run info might be not correctly updated " << endl;
3993        if ( fUseDBinRunInfo ){
3994          if (gltsync)
3995            delete gltsync; //Emiliano
3996          if (!dbc || (dbc && !dbc->IsConnected()))
3997            SetDBConnection(); //Emiliano
3998          gltsync = new GL_TIMESYNC(GetRunInfo()->ID_ROOT_L0, "ID", dbc, false); //Emiliano // the "false" means not to use level0 file (not necessary here)
3999          if (dbc){
4000            dbc->Close();// Emiliano
4001            delete dbc;
4002            dbc=0;
4003          }
4004        }
4005      }
4006      // ---------------------------------------------------------------
4007      // retrieve OBT and absolute time of the event
4008      // ---------------------------------------------------------------
4009      Long64_t obt = 0LL; // Emiliano, Long64_t GL_TIMESYNC::DBobt(UInt_t obt) since depending on the situation OBT is lowered or boosted
4010      prevabstime = abstime;
4011      prevpktnum = pktnum;
4012      if (GetOrbitalInfo()) {
4013        abstime = GetOrbitalInfo()->absTime;
4014        if ( fUseDBinRunInfo ) obt = gltsync->DBobt(GetOrbitalInfo()->OBT); // Emiliano
4015        pktnum = GetOrbitalInfo()->pkt_num; // Emiliano
4016      }
4017      else {
4018        abstime = GetRunInfo()->RUNHEADER_TIME;
4019        if ( fUseDBinRunInfo ) obt = gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT); // Emiliano
4020        pktnum = GetRunInfo()->RUNHEADER_PKT; // Emiliano
4021      }
4022    
4023      if (DBG){
4024        printf("0abstime %lld %lld pktnum %d %d obt %lld \n",abstime,prevabstime,pktnum,prevpktnum,obt);
4025        printf("0        rth %d %d nevents %d  \n",GetRunInfo()->RUNHEADER_TIME,GetRunInfo()->RUNTRAILER_TIME,GetRunInfo()->NEVENTS);
4026        printf("0        rto %d %d \n",GetRunInfo()->RUNHEADER_OBT,GetRunInfo()->RUNTRAILER_OBT);
4027        if ( fUseDBinRunInfo ) printf("0        rto2 %lld %lld \n",gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT),gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT));
4028        printf("0        bo irunentry %lld prevshift %lld irun %lld  \n",irunentry,prevshift,irun);
4029        printf("0        min %lld iev %lld max %lld tot %lld \n",totrunentrymin,iev,totrunentrymax,totrunentry);
4030      }
4031    
4032      // +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-
4033      // if it is a full file (not preselected)
4034      // +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-
4035      if (SELLI == 0 || SELLI == 2) { // Emiliano
4036    
4037        // ---------------------------------------------------------------
4038        // increment dead and live-time counters
4039        // (only when reading a file not preselected)
4040        // ---------------------------------------------------------------
4041        if (SELLI == 0) {
4042          if (GetTrigLevel2()) {
4043            totdltime[0] += GetTrigLevel2()->dltime[0];
4044            totdltime[1] += GetTrigLevel2()->dltime[1];
4045          }
4046          totdltime[2]++;
4047        }
4048    
4049        //
4050        bool a = true;
4051        bool b = true;
4052        if ( fUseDBinRunInfo ){
4053          a = false;    
4054          b = false;
4055          if ( obt < gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT) ) a = true;
4056          if ( obt > gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT) ) b = true;
4057        }
4058        if ( iev < totrunentrymin || iev > totrunentrymax // entry is outside run limits
4059             || iev == 0 // or it is the first entry
4060             || (!isSync && (
4061                             (abstime <= GetRunInfo()->RUNHEADER_TIME && a ) // or it is outside obt limits (and abstime limits for security reasons)
4062                             || (abstime >= GetRunInfo()->RUNTRAILER_TIME && b ) ))// or it is outside obt limits (and abstime limits for security reasons)
4063             ){ // check on abstime and obt needed to handle nested+DV_skipped packets
4064          
4065          // check for a new run (ma prima il primo!)
4066          if (DBG){
4067            printf("1abstime %lld %lld pktnum %d %d obt %lld \n",abstime,prevabstime,pktnum,prevpktnum,obt);
4068            printf("1        rth %d %d nevents %d  \n",GetRunInfo()->RUNHEADER_TIME,GetRunInfo()->RUNTRAILER_TIME,GetRunInfo()->NEVENTS);
4069            printf("1        rto %d %d \n",GetRunInfo()->RUNHEADER_OBT,GetRunInfo()->RUNTRAILER_OBT);
4070            if ( fUseDBinRunInfo ) printf("1        rto2 %lld %lld \n",gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT),gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT));
4071            printf("1        bo irunentry %lld prevshift %lld irun %lld  \n",irunentry,prevshift,irun);
4072            printf("1        min %lld iev %lld max %lld tot %lld \n",totrunentrymin,iev,totrunentrymax,totrunentry);
4073          }
4074          //        printf("1abstime %lld %lld pktnum %d %d obt %lld \n",abstime,prevabstime,pktnum,prevpktnum,obt);
4075          //        printf("1        rth %d %d nevents %d  \n",GetRunInfo()->RUNHEADER_TIME,GetRunInfo()->RUNTRAILER_TIME,GetRunInfo()->NEVENTS);
4076          //        printf("1        rto %d %d \n",GetRunInfo()->RUNHEADER_OBT,GetRunInfo()->RUNTRAILER_OBT);
4077          //        printf("1        rto2 %lld %lld \n",gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT),gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT));
4078          //        printf("1        bo irunentry %lld prevshift %lld irun %lld  \n",irunentry,prevshift,irun);
4079          //        printf("1        min %lld iev %lld max %lld tot %lld \n",totrunentrymin,iev,totrunentrymax,totrunentry);//TOGLITOGLI
4080    
4081          totrunentry = 0LL;
4082          runfirstentry = 0LL;
4083          for (Int_t r=0; r< run_tree->GetEntries();r++){
4084            // -------------------------------------------------------------------
4085            // save the index of the first entry of the run, relative to pam_tree,
4086            // and read a new run
4087            // -------------------------------------------------------------------
4088            run_tree->GetEntry(r);//update runinfo
4089            if ( r > 0 ){
4090              totrunentrymin = totrunentrymax+1;
4091            } else {
4092              totrunentrymin = 0LL;
4093            }
4094            totrunentry += GetRunInfo()->NEVENTS;
4095            totrunentrymax = totrunentry - 1 - prevshift; // prevshift is needed to handle nested+DV_skipped packets
4096            irun = r;        
4097            if ( fUseDBinRunInfo ){
4098              a = false;    
4099              b = false;
4100              if ( obt < gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT) ) a = true;
4101              if ( obt > gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT) ) b = true;
4102            }
4103            if ( (iev >= totrunentrymin && iev <= totrunentrymax) || // entry is inside run limits
4104                 ( !isSync &&
4105                   ( abstime >= GetRunInfo()->RUNHEADER_TIME  && a // or it is inside obt limits (and abstime limits for security reasons)
4106                     && abstime <= GetRunInfo()->RUNTRAILER_TIME && b))  // or it is inside obt limits (and abstime limits for security reasons)
4107                 ){ // check on abstime and obt needed to handle nested+DV_skipped packets
4108              if ( totrunentrymin > iev ){ // there is a shift (nested+DV_skipped packets)
4109                if ( !isSync ){
4110                  if (DBG) printf("PamLevel2::UpdateRunInfo(Long64_t) - unconsistent iev - nevents, probable DBL0-L2 async\n");
4111                  if (DBG) printf("PamLevel2::UpdateRunInfo(Long64_t) - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);
4112                  //              printf("PamLevel2::UpdateRunInfo(Long64_t) - unconsistent iev - nevents, probable DBL0-L2 async\n");
4113                  //              printf("PamLevel2::UpdateRunInfo(Long64_t) - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);//TOGLITOGLI
4114                  prevshift += (totrunentrymin-iev); // add the new shift to total shift
4115                  totrunentrymin -= (totrunentrymin-iev); // shift run position min
4116                  totrunentrymax -= (totrunentrymin-iev); // shift run position max
4117                  if (DBG) printf("PamLevel2::UpdateRunInfo(Long64_t) - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);
4118                  //              printf("PamLevel2::UpdateRunInfo(Long64_t) - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);//TOGLITOGLI
4119                } else {
4120                  printf(" PamLevel2::UpdateRunInfo(Long64_t) ERROR! sync file but unconsistent totrunetrymin %lld and iev %lld!!! \n",totrunentrymin,iev);
4121                  cout << " OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
4122                  cout << "\nFor bug reporting instructions, please see for example:\n";
4123                  cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
4124                  cout << "  " << endl;
4125                }
4126              }
4127              runfirstentry = totrunentrymin; // first entry of the run in the level2
4128              
4129    
4130              //
4131              if ( fUseDBinRunInfo ){
4132                if (gltsync)
4133                  delete gltsync; // Emiliano
4134                if (!dbc || (dbc && !dbc->IsConnected()))
4135                  SetDBConnection(); //Emiliano
4136                gltsync = new GL_TIMESYNC(GetRunInfo()->ID_ROOT_L0, "ID", dbc, false); // Emiliano
4137                TrkParams::Set(GetRunInfo(), dbc);
4138                if (dbc){
4139                  dbc->Close(); // Emiliano
4140                  delete dbc;
4141                  dbc=0;
4142                }          
4143                if (gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT) > gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT)) { // Emiliano
4144                  cout << "Bool_t PamLevel2::UpdateRunInfo(Long64_t iev) -- WARNING -- irun " << irun
4145                       << "  has RUNHEADER_OBT>=RUNTRAILER_OBT " << endl;
4146                  cout
4147                    << "                                                            (NB!! in this case some events could be assigned to a wrong run)"
4148                    << endl;
4149                }
4150              }
4151              //
4152              if (DBG) printf(" found \n");
4153              //          printf(" found \n");//TOGLITOGLI
4154              //
4155              break;
4156            }
4157          } // loop over run
4158          
4159          // --------------------------------------
4160          // if there was no need to update the run
4161          // ---> exit with FALSE
4162          // --------------------------------------
4163          if (irun == oldrun){
4164            if (DBG) printf(" no new run \n");
4165            //        printf(" no new run \n");//TOGLITOGLI
4166            return (false);
4167          }      
4168          // --------------------------------------
4169          // ... otherwise
4170          // ---> exit with TRUE
4171          // --------------------------------------
4172    
4173          if (SELLI != 2) {
4174            /// decrement counters since this event belongs to a new run
4175            if (GetTrigLevel2()) {
4176              totdltime[0] -= GetTrigLevel2()->dltime[0];//live-time
4177              totdltime[1] -= GetTrigLevel2()->dltime[1];//dead-time
4178            }
4179            totdltime[2]--; //event counter
4180            if (DBG) {
4181              cout << endl;
4182              cout << "n.events     : " << totdltime[2] << endl;
4183              cout << "RUN LIVE-TIME: " << totdltime[0] * 0.16 << " ms" << endl;
4184              cout << "RUN DEAD-TIME: " << totdltime[1] * 0.01 << " ms" << endl;
4185            }
4186            // add an entry
4187            if (run_tree_clone && totdltime[2] > 0)
4188              if (run_tree_clone->GetBranch("DeadLiveTime")->GetEntries() < run_tree->GetEntries())
4189                run_tree_clone->GetBranch("DeadLiveTime")->Fill();
4190            // reset counters
4191            if ( totdltime[2] > 0 ){
4192              if (GetTrigLevel2()) {
4193                totdltime[0] = GetTrigLevel2()->dltime[0];//live-time
4194                totdltime[1] = 0; //dead-time
4195              }
4196              totdltime[2] = 1; //event counter
4197            }
4198          }
4199    
4200          if (DBG){
4201            cout << endl << " ))))) UPDATE RUN INFO (((((  @iev " << iev << " run " << GetRunInfo()->ID << " irun " << irun
4202                 << endl;        
4203            printf("2abstime %lld %lld pktnum %d %d obt %lld \n",abstime,prevabstime,pktnum,prevpktnum,obt);
4204            printf("2        rth %d %d nevents %d  \n",GetRunInfo()->RUNHEADER_TIME,GetRunInfo()->RUNTRAILER_TIME,GetRunInfo()->NEVENTS);
4205            printf("2        rto %d %d \n",GetRunInfo()->RUNHEADER_OBT,GetRunInfo()->RUNTRAILER_OBT);
4206            if ( fUseDBinRunInfo ) printf("2        rto2 %lld %lld \n",gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT),gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT));
4207            printf("2        bo irunentry %lld prevshift %lld irun %lld  \n",irunentry,prevshift,irun);
4208            printf("2        min %lld iev %lld max %lld tot %lld \n",totrunentrymin,iev,totrunentrymax,totrunentry);
4209          }
4210          //        printf("2abstime %lld %lld pktnum %d %d obt %lld \n",abstime,prevabstime,pktnum,prevpktnum,obt);
4211          //        printf("2        rth %d %d nevents %d  \n",GetRunInfo()->RUNHEADER_TIME,GetRunInfo()->RUNTRAILER_TIME,GetRunInfo()->NEVENTS);
4212          //        printf("2        rto %d %d \n",GetRunInfo()->RUNHEADER_OBT,GetRunInfo()->RUNTRAILER_OBT);
4213          //        printf("2        rto2 %lld %lld \n",gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT),gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT));
4214          //        printf("2        bo irunentry %lld prevshift %lld irun %lld  \n",irunentry,prevshift,irun);
4215          //        printf("2        min %lld iev %lld max %lld tot %lld \n",totrunentrymin,iev,totrunentrymax,totrunentry);//TOGLITOGLI
4216    
4217          return (true);
4218        } // need for run upgrade
4219        if (DBG) printf("return false\n");
4220        return (false);
4221      }// SELLI = 0 SELLI = 2
4222      
4223      // +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-
4224      // if it is a preselected file (there is SelectionList)
4225      // +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-
4226      // irun  = run entry relative to the chain
4227      // irunt = run entry relative to the tree
4228      if (SELLI == 1) {
4229        sel_tree->GetEntry(iev);// read irunt from SelectionList
4230        irun = irunt + irunoffset[sel_tree->GetTreeNumber()];//NEWNEW
4231        if (irun != oldrun) {
4232          if (irun < run_tree->GetEntries())
4233            run_tree->GetEntry(irun);
4234          // check if the time is ok (with merged files it is not...)
4235          // if not loop over run and look for the proper entry
4236          bool SECONDO_GIRO = false;
4237          //            Long64_t irun_start   = irun;
4238          int offset_start = irunoffset[sel_tree->GetTreeNumber()];
4239          while (((!(abstime >= GetRunInfo()->RUNHEADER_TIME && // check on absolute time (s)
4240              abstime <= GetRunInfo()->RUNTRAILER_TIME)
4241          //                        ||
4242          //                        !(obt >= GetRunInfo()->RUNHEADER_OBT &&         // additional check on OBT (ms)
4243          //                          obt <= GetRunInfo()->RUNTRAILER_OBT)
4244          ) || GetRunInfo()->NEVENTS == 0)
4245          //                && irun < run_tree->GetEntries()
4246          ) {
4247    
4248            if (DBG) {
4249              cout << " (test) ";
4250              cout << " tree " << sel_tree->GetTreeNumber();
4251              cout << " irunt " << irunt;
4252              cout << " offset " << irunoffset[sel_tree->GetTreeNumber()];
4253              cout << " abs " << abstime;
4254              cout << " >> " << GetRunInfo()->RUNHEADER_TIME << " " << GetRunInfo()->RUNTRAILER_TIME;
4255              cout << " obt " << obt;
4256              cout << " >> " << GetRunInfo()->RUNHEADER_OBT << " " << GetRunInfo()->RUNTRAILER_OBT;
4257              cout << " *** JUMP RUN *** irun " << irun;
4258              cout << endl;
4259            }
4260            //              irun++;
4261            irunoffset[sel_tree->GetTreeNumber()]++;
4262            irun = irunt + irunoffset[sel_tree->GetTreeNumber()];//NEWNEW
4263            if (irun == run_tree->GetEntries() && SECONDO_GIRO) {
4264              //            if(irun == irun_start ){
4265              cout << " ...grrrvzzkhhhajsdkj!!!! " << endl;
4266              irunoffset[sel_tree->GetTreeNumber()] = offset_start;
4267              return false;
4268            }
4269            if (irun >= run_tree->GetEntries() || irun < 0) {
4270              cout << "irun = " << irun << " >>  search from the beginning... <<" << endl;
4271              SECONDO_GIRO = true;
4272              irun = 0;
4273              irunoffset[sel_tree->GetTreeNumber()] = -irunt;
4274            }
4275            run_tree->GetEntry(irun);
4276          }
4277    
4278          if (DBG) {
4279            cout << " (test) ";
4280            cout << " tree " << sel_tree->GetTreeNumber();
4281            cout << " irunt " << irunt;
4282            cout << " offset " << irunoffset[sel_tree->GetTreeNumber()];
4283            cout << " abs " << abstime;
4284            cout << " >> " << GetRunInfo()->RUNHEADER_TIME << " " << GetRunInfo()->RUNTRAILER_TIME;
4285            cout << " obt " << obt;
4286            cout << " >> " << GetRunInfo()->RUNHEADER_OBT << " " << GetRunInfo()->RUNTRAILER_OBT;
4287          }
4288          if (DBG)
4289            cout << endl;
4290          if (DBG)
4291            cout << endl << " ))))) UPDATE RUN INFO (((((  @iev " << iev << " run " << GetRunInfo()->ID << " (run-entry "
4292                << irun << ")" << endl;
4293          // ----------------------------------------------------
4294          // update the tracker parameters
4295          // (non ho trovato nessun altro modo sicuro di farlo...)
4296          // ----------------------------------------------------
4297          if ( fUseDBinRunInfo ){
4298            if (!dbc || (dbc && !dbc->IsConnected()))
4299              SetDBConnection();
4300            TrkParams::Set(GetRunInfo(), dbc);
4301            if (dbc){
4302              dbc->Close();
4303              delete dbc;
4304              dbc=0;
4305            }
4306          }
4307          //            cout << endl;
4308          prevshift = 0;
4309          yprevshift = 0;
4310          return true;
4311        }
4312        return false;
4313      }
4314    
4315      return false;
4316      //
4317  }  }
4318  //--------------------------------------  
 //  
 //  
 //--------------------------------------  
4319  /**  /**
4320   * Set branch addresses for Pamela friend trees   * Update the runinfo informations (to be used to have Run infos event by event basis)
4321     * @param run Pointer to the chain/tree which contains run infos
4322     * @return true if a new run has been read, false if it is still the same run
4323   */   */
4324  void PamLevel2::SetBranchAddress(){  Bool_t PamLevel2::UpdateRunInfo(TChain *run, Long64_t iev) {
4325      // Tracker    return (UpdateRunInfo(iev));
         if(TRK) {  
                 if(TRK_L1){  
                         Tout->SetBranchAddress("TrkLevel1", GetPointerToTrk(1));  
                         cout << "Tracker      : set branch address TrkLevel1"<<endl;  
                 };  
                 Tout->SetBranchAddress("TrkLevel2", GetPointerToTrk(2));  
                 cout << "Tracker      : set branch address TrkLevel2"<<endl;  
         };  
               
         // Calorimeter  
         if(CAL) {  
                 Tout->SetBranchAddress("CaloLevel2", GetPointerToCalo());  
                 cout << "Calorimeter  : set branch address CaloLevel2"<<endl;  
         };  
           
     // ToF      
         if(TOF) {  
                 Tout->SetBranchAddress("ToFLevel2", GetPointerToToF());  
                 cout << "ToF          : set branch address ToFLevel2"<<endl;  
         };  
     // Trigger  
         if(TRG) {  
                 Tout->SetBranchAddress("TrigLevel2", GetPointerToTrig());  
                 cout << "Trigger      : set branch address TrigLevel2"<<endl;  
         };  
     // S4  
         if(S4) {  
                 Tout->SetBranchAddress("S4Level2", GetPointerToS4());  
                 cout << "S4           : set branch address S4Level2"<<endl;  
         };  
     // Neutron Detector  
         if(ND) {  
                 Tout->SetBranchAddress("NDLevel2", GetPointerToND());  
                 cout << "NeutronD     : set branch address NDLevel2"<<endl;  
         };  
     // Anticounters  
         if(AC) {  
                 Tout->SetBranchAddress("AcLevel2", GetPointerToAc());  
                 cout << "Anticounter  : set branch address AcLevel2"<<endl;  
         };  
     // OrbitalInfo  
         if(ORB) {  
                 Tout->SetBranchAddress("OrbitalInfo", GetPointerToOrb());  
                 cout << "OrbitalInfo  : set branch address OrbitalInfo"<<endl;  
         };  
           
4326  }  }
4327    
 //--------------------------------------  
 //  
 //  
 //--------------------------------------  
 void *PamLevel2::GetPointerTo(const char* c ){  
 //      cout << "objname "<< objname << endl;  
         TString objname = c;  
         if(!objname.CompareTo("TrkLevel1"))return &trk_l1_obj;  
         if(!objname.CompareTo("TrkLevel2"))return &trk_obj;  
           
         return NULL;  
 };  
 //--------------------------------------  
 //  
 //  
 //--------------------------------------  
4328  /**  /**
4329   * Get the Run tree chain from a list of files.   * Update the runinfo informations (to be used to have Run infos event by event basis)
4330   * @param fl Pointer to a TList of TSystemFiles   * @param run Pointer to the chain/tree which contains run infos
4331   * @return Pointer to a TChain   * @return true if a new run has been read, false if it is still the same run
4332   */   */
4333  TChain *PamLevel2::GetRunTree(TList *fl){  Bool_t PamLevel2::UpdateRunInfo(TTree *run, Long64_t iev) {
4334              return (UpdateRunInfo((TChain*) run, iev));
         TChain *R = new TChain("Run");  
   
         // loop over files and create chains      
         TIter next(fl);  
         TSystemFile *questo = 0;  
         while ( (questo = (TSystemFile*) next()) ) {  
                 TString name =  questo->GetName();  
 //              cout << "File: "<< name << endl;  
                 if( CheckLevel2File(name) ){  
                         R->Add(name);  
                 };  
         }  
           
         R->SetBranchAddress("RunInfo", GetPointerToRun());  
         cout << "Run         : set branch address RunInfo"<<endl;  
       
         return R;  
       
4335  }  }
4336    
4337    
4338  //--------------------------------------  //--------------------------------------
4339  //  //
4340  //  //
4341  //--------------------------------------  //--------------------------------------
4342  /**  /**
4343   * Get the Run tree  from a file.   * Set which trees shoul be analysed
4344   * @param f Pointer to a TFile   * @param detlist TString containing the sequence of trees required
  * @return Pointer to a TTree  
4345   */   */
4346  TTree *PamLevel2::GetRunTree(TFile *f){  void PamLevel2::SetWhichTrees(TString detlist) {
4347    
4348      //    if(detlist.IsNull() || detlist.Contains("+ALL", TString::kIgnoreCase)){
4349      if (detlist.Contains("+ALL", TString::kIgnoreCase)) {
4350    
4351          TTree *R = (TTree*)f->Get("Run");      cout << " ======================================================== " << endl;
4352        cout << "                       (( WARNING ))                      " << endl;
4353        cout << " The meaning of the option +ALL has changed!!             " << endl;
4354        cout << " Now it includes really all (level0+level1+level2+gpamela)" << endl;
4355        cout << " and the file is discarded if it does not contain         " << endl;
4356        cout << " all trees or  if level0 files are not available!!        " << endl;
4357        cout << " ======================================================== " << endl;
4358    
4359        CAL0 = true;
4360        CAL1 = true;
4361        CAL2 = true;
4362        TRK2 = true;
4363        TRK1 = true;
4364        TRKh = true;
4365        TRK0 = true;
4366        TRG = true;
4367        TOF = true;
4368        TOF0 = true;
4369        S4 = true;
4370        ND = true;
4371        AC = true;
4372        ORB = true;
4373        GP = true;
4374      }
4375      else if (detlist.Contains("-ALL", TString::kIgnoreCase)) {
4376        CAL0 = false;
4377        CAL1 = false;
4378        CAL2 = false;
4379        TRK2 = false;
4380        TRK1 = false;
4381        TRKh = false;
4382        TRK0 = false;
4383        TRG = false;
4384        TOF = false;
4385        TOF0 = false;
4386        S4 = false;
4387        ND = false;
4388        AC = false;
4389        ORB = false;
4390        GP = false;
4391      };
4392    
4393      //  -------------------------------------------------------------------------
4394      if (detlist.Contains("CAL1", TString::kIgnoreCase)) {
4395        if (detlist.Contains("-CAL1", TString::kIgnoreCase))
4396          CAL1 = false;
4397        if (detlist.Contains("+CAL1", TString::kIgnoreCase))
4398          CAL1 = true;
4399      };
4400    
4401      if (detlist.Contains("CAL0", TString::kIgnoreCase)) {
4402        if (detlist.Contains("-CAL0", TString::kIgnoreCase))
4403          CAL0 = false;
4404        if (detlist.Contains("+CAL0", TString::kIgnoreCase))
4405          CAL0 = true;
4406      };
4407    
4408      if (detlist.Contains("CAL2", TString::kIgnoreCase)) {
4409        if (detlist.Contains("-CAL2", TString::kIgnoreCase))
4410          CAL2 = false;
4411        if (detlist.Contains("+CAL2", TString::kIgnoreCase))
4412          CAL2 = true;
4413      };
4414    
4415      if (detlist.Contains("+CAL", TString::kIgnoreCase) && !CAL1 && !CAL2)
4416        CAL2 = true;
4417      if (detlist.Contains("-CAL", TString::kIgnoreCase) && CAL1 && CAL2) {
4418        CAL2 = false;
4419        CAL1 = false;
4420      }
4421      //  -------------------------------------------------------------------------
4422      if (detlist.Contains("TRK0", TString::kIgnoreCase)) {
4423        if (detlist.Contains("-TRK0", TString::kIgnoreCase))
4424          TRK0 = false;
4425        if (detlist.Contains("+TRK0", TString::kIgnoreCase))
4426          TRK0 = true;
4427      };
4428    
4429      if (detlist.Contains("TRK1", TString::kIgnoreCase)) {
4430        if (detlist.Contains("-TRK1", TString::kIgnoreCase))
4431          TRK1 = false;
4432        if (detlist.Contains("+TRK1", TString::kIgnoreCase))
4433          TRK1 = true;
4434      };
4435    
4436      if (detlist.Contains("TRK2", TString::kIgnoreCase)) {
4437        if (detlist.Contains("-TRK2", TString::kIgnoreCase))
4438          TRK2 = false;
4439        if (detlist.Contains("+TRK2", TString::kIgnoreCase))
4440          TRK2 = true;
4441      };
4442    
4443      if (detlist.Contains("TRKh", TString::kIgnoreCase)) {
4444        if (detlist.Contains("-TRKh", TString::kIgnoreCase))
4445          TRKh = false;
4446        if (detlist.Contains("+TRKh", TString::kIgnoreCase))
4447          TRKh = true;
4448      };
4449    
4450      if (detlist.Contains("+TRK", TString::kIgnoreCase) && !TRK1 && !TRK2 && !TRKh)
4451        TRK2 = true;
4452      if (detlist.Contains("-TRK", TString::kIgnoreCase) && TRK1 && TRK2 && TRKh) {
4453        TRK2 = false;
4454        TRK1 = false;
4455        TRKh = false;
4456      }
4457      //  -------------------------------------------------------------------------
4458    
4459      if (detlist.Contains("-TRG", TString::kIgnoreCase))
4460        TRG = false;
4461      else if (detlist.Contains("+TRG", TString::kIgnoreCase))
4462        TRG = true;
4463    
4464      if (detlist.Contains("-TOF", TString::kIgnoreCase))
4465        TOF = false;
4466      else if (detlist.Contains("+TOF", TString::kIgnoreCase))
4467        TOF = true;
4468    
4469      if (detlist.Contains("-TOF0", TString::kIgnoreCase))
4470        TOF0 = false;
4471      else if (detlist.Contains("+TOF0", TString::kIgnoreCase))
4472        TOF0 = true;
4473    
4474      if (detlist.Contains("-S4", TString::kIgnoreCase))
4475        S4 = false;
4476      else if (detlist.Contains("+S4", TString::kIgnoreCase))
4477        S4 = true;
4478    
4479      if (detlist.Contains("-ND", TString::kIgnoreCase))
4480        ND = false;
4481      else if (detlist.Contains("+ND", TString::kIgnoreCase))
4482        ND = true;
4483    
4484      if (detlist.Contains("-AC", TString::kIgnoreCase))
4485        AC = false;
4486      else if (detlist.Contains("+AC", TString::kIgnoreCase))
4487        AC = true;
4488    
4489      if (detlist.Contains("-ORB", TString::kIgnoreCase))
4490        ORB = false;
4491      else if (detlist.Contains("+ORB", TString::kIgnoreCase))
4492        ORB = true;
4493    
4494      if (detlist.Contains("-GP", TString::kIgnoreCase))
4495        GP = false;
4496      else if (detlist.Contains("+GP", TString::kIgnoreCase))
4497        GP = true;
4498    
4499      cout << "tree/branch list from input --> ";
4500      if (TRK0)
4501        cout << "TRK0 ";
4502      if (TRK1)
4503        cout << "TRK1 ";
4504      if (TRK2)
4505        cout << "TRK2 ";
4506      if (TRKh)
4507        cout << "TRKH ";
4508      if (CAL0)
4509        cout << "CAL0 ";
4510      if (CAL1)
4511        cout << "CAL1 ";
4512      if (CAL2)
4513        cout << "CAL2 ";
4514      if (TOF)
4515        cout << "TOF ";
4516      if (TRG)
4517        cout << "TRG ";
4518      if (AC)
4519        cout << "AC ";
4520      if (ND)
4521        cout << "ND ";
4522      if (S4)
4523        cout << "S4 ";
4524      if (ORB)
4525        cout << "ORB ";
4526      if (GP)
4527        cout << "GP ";
4528      cout << endl;
4529      //     cout<< "Set detector list --> ";
4530      //     if(TRK1)cout<<"TRK1 ";
4531      //     if(TRK2)cout<<"TRK2 ";
4532      //     if(TRKh)cout<<"TRKH ";
4533      //     if(CAL1)cout<<"CAL1 ";
4534      //     if(CAL2)cout<<"CAL2 ";
4535      //     if(TOF0)cout<<"TOF0 ";
4536      //     if(TOF)cout<<"TOF ";
4537      //     if(TRG)cout<<"TRG ";
4538      //     if(AC)cout<<"AC ";
4539      //     if(ND)cout<<"ND ";
4540      //     if(S4)cout<<"S4 ";
4541      //     if(ORB)cout<<"ORB ";
4542      //     cout << endl;
4543    
         R->SetBranchAddress("RunInfo", GetPointerToRun());  
         cout << "Run         : set branch address RunInfo"<<endl;  
       
         return R;  
       
4544  }  }
4545  //--------------------------------------  ;
4546  //  
 //  
 //--------------------------------------  
4547  /**  /**
4548   * Set which trees should be analysed   * Set tree/branch detector flags from the content of a tree
4549   * @param detlist TString containing the sequence of trees required   */
4550  */  void PamLevel2::GetWhichTrees(TFile* f) {
4551  void PamLevel2::SetWhichTrees(TString detlist){  
4552              //    cout << "void  PamLevel2::GetWhichTrees(TFile* f) --- WARNING!! --- ...potrebbe non funzionare "<<endl;
4553          if(detlist.Contains("+ALL", TString::kIgnoreCase)){    // -----------
4554                  CAL = true;    // reset flags
4555                  TRK = true;    // -----------
4556                  TRK_L1 = false;    CAL1 = false;
4557                  TRG = true;    CAL2 = false;
4558                  TOF = true;    TRK2 = false;
4559                  S4  = true;    TRK1 = false;
4560                  ND  = true;    TRKh = false;
4561                  AC  = true;    TRG = false;
4562                  ORB = true;    TOF = false;
4563          }else if( detlist.Contains("-ALL", TString::kIgnoreCase) ){    S4 = false;
4564                  CAL = false;    ND = false;
4565                  TRK = false;    AC = false;
4566                  TRK_L1 = false;    ORB = false;
4567                  TRG = false;    GP = false;
4568                  TOF = false;  
4569                  S4  = false;    RUN = false;
4570                  ND  = false;  
4571                  AC  = false;    //    cout << "Checking file: "<<f->GetName()<<endl;
4572                  ORB = false;    if (!f || f->IsZombie()) {
4573          };      cout << "File: " << f->GetName() << " Non valid root file" << endl;
4574                return;
4575          if( detlist.Contains("-CAL", TString::kIgnoreCase) )CAL = false;    }
4576          else if( detlist.Contains("+CAL", TString::kIgnoreCase) )CAL = true;  
4577              TList *lk = f->GetListOfKeys();
4578          if( detlist.Contains("-TRK", TString::kIgnoreCase) )TRK = false;    if (!lk)
4579          else if( detlist.Contains("+TRK", TString::kIgnoreCase) )TRK = true;      return;
4580              TIter next(lk);
4581          if( detlist.Contains("-TRK1", TString::kIgnoreCase) )TRK_L1 = false;    TKey *key = 0;
4582          else if( detlist.Contains("+TRK1", TString::kIgnoreCase) )TRK_L1 = true;  
4583              Int_t nev = 0;
4584          if( detlist.Contains("-TRG", TString::kIgnoreCase) )TRG = false;  
4585          else if( detlist.Contains("+TRG", TString::kIgnoreCase) )TRG = true;    while ((key = (TKey*) next())) {
4586            
4587          if( detlist.Contains("-TOF", TString::kIgnoreCase) )TOF = false;      if (!strcmp(key->GetName(), "Run"))
4588          else if( detlist.Contains("+TOF", TString::kIgnoreCase) )TOF = true;        RUN = true;
4589            
4590          if( detlist.Contains("-S4",  TString::kIgnoreCase) )S4  = false;      //=========================================================
4591          else if( detlist.Contains("+S4",  TString::kIgnoreCase) )S4  = true;      if (!strcmp(key->GetName(), "Trigger")) {
4592                  TRG = true;
4593          if( detlist.Contains("-ND",  TString::kIgnoreCase) )ND  = false;        Int_t nevt = ((TTree*) f->Get("Trigger"))->GetEntries();
4594          else if( detlist.Contains("+ND",  TString::kIgnoreCase) )ND  = true;        if (nev && nevt != nev) {
4595                    cout << "File: " << f->GetName() << " Trigger tree has " << nevt << " events instead of " << nev << endl;
4596          if( detlist.Contains("-AC",  TString::kIgnoreCase) )AC  = false;          TRG = false;
4597          else if( detlist.Contains("+AC",  TString::kIgnoreCase) )AC  = true;        }
4598                  else
4599          if( detlist.Contains("-ORB", TString::kIgnoreCase) )ORB = false;          nev = nevt;
4600          else if( detlist.Contains("+ORB", TString::kIgnoreCase) )ORB = true;      }
4601                //=========================================================
4602  };      if (!strcmp(key->GetName(), "ToF")) {
4603          TOF = true;
4604          Int_t nevt = ((TTree*) f->Get("ToF"))->GetEntries();
4605          if (nev && nevt != nev) {
4606            cout << "File: " << f->GetName() << "     ToF tree has " << nevt << " events instead of " << nev << endl;
4607            TOF = false;
4608          }
4609          else
4610            nev = nevt;
4611        }
4612        //=========================================================
4613        if (!strcmp(key->GetName(), "S4")) {
4614          S4 = true;
4615          Int_t nevt = ((TTree*) f->Get("S4"))->GetEntries();
4616          if (nev && nevt != nev) {
4617            cout << "File: " << f->GetName() << "      S4 tree has " << nevt << " events instead of " << nev << endl;
4618            S4 = false;
4619          }
4620          else
4621            nev = nevt;
4622        }
4623        //=========================================================
4624    
4625        if (!strcmp(key->GetName(), "NeutronD")) {
4626          ND = true;
4627          Int_t nevt = ((TTree*) f->Get("NeutronD"))->GetEntries();
4628          if (nev && nevt != nev) {
4629            cout << "File: " << f->GetName() << "NeutronD tree has " << nevt << " events instead of " << nev << endl;
4630            ND = false;
4631          }
4632          else
4633            nev = nevt;
4634        }
4635        //=========================================================
4636        if (!strcmp(key->GetName(), "Anticounter")) {
4637          AC = true;
4638          Int_t nevt = ((TTree*) f->Get("Anticounter"))->GetEntries();
4639          if (nev && nevt != nev) {
4640            cout << "File: " << f->GetName() << " Anticounter tree has " << nevt << " events instead of " << nev << endl;
4641            AC = false;
4642          }
4643          else
4644            nev = nevt;
4645        }
4646        //=========================================================
4647        if (!strcmp(key->GetName(), "OrbitalInfo")) {
4648          ORB = true;
4649          Int_t nevt = ((TTree*) f->Get("OrbitalInfo"))->GetEntries();
4650          if (nev && nevt != nev) {
4651            cout << "File: " << f->GetName() << " OrbitalInfo tree has " << nevt << " events instead of " << nev << endl;
4652            ORB = false;
4653          }
4654          else
4655            nev = nevt;
4656        }
4657        //=========================================================
4658        if (!strcmp(key->GetName(), "Tracker")) {
4659          TTree *T = (TTree*) f->Get("Tracker");
4660          for (Int_t i = 0; i < T->GetListOfBranches()->GetEntries(); i++) {
4661            TString name = T->GetListOfBranches()->At(i)->GetName();
4662            if (!name.CompareTo("TrkLevel1"))
4663              TRK1 = true;
4664            if (!name.CompareTo("TrkLevel2"))
4665              TRK2 = true;
4666            if (!name.CompareTo("TrkHough"))
4667              TRKh = true;
4668          };
4669          Int_t nevt = T->GetEntries();
4670          if (nev && nevt != nev) {
4671            cout << "File: " << f->GetName() << " Tracker tree has " << nevt << " events instead of " << nev << endl;
4672            TRK1 = false;
4673            TRK2 = false;
4674            TRKh = false;
4675          }
4676          else
4677            nev = nevt;
4678          //            T->Delete();
4679        };
4680        //=========================================================
4681        if (!strcmp(key->GetName(), "Calorimeter")) {
4682          TTree *T = (TTree*) f->Get("Calorimeter");
4683          for (Int_t i = 0; i < T->GetListOfBranches()->GetEntries(); i++) {
4684            TString name = T->GetListOfBranches()->At(i)->GetName();
4685            if (!name.CompareTo("CaloLevel1"))
4686              CAL1 = true;
4687            if (!name.CompareTo("CaloLevel2"))
4688              CAL2 = true;
4689          };
4690          Int_t nevt = T->GetEntries();
4691          if (nev && nevt != nev) {
4692            cout << "File: " << f->GetName() << "  Calorimeter tree has " << nevt << " events instead of " << nev << endl;
4693            CAL1 = false;
4694            CAL2 = false;
4695          }
4696          else
4697            nev = nevt;
4698          //            T->Delete();
4699        };
4700        //=========================================================
4701        if (!strcmp(key->GetName(), "h20")) {
4702          GP = true;
4703          Int_t nevt = ((TTree*) f->Get("h20"))->GetEntries();
4704          if (nev && nevt != nev) {
4705            cout << "File: " << f->GetName() << " h20 tree has " << nevt << " events instead of " << nev << endl;
4706            GP = false;
4707          }
4708          else
4709            nev = nevt;
4710        }
4711    
4712      };
4713    
4714      //    delete lk;
4715    
4716      cout << "tree/branch list from file  --> ";
4717      if (TRK1)
4718        cout << "TRK1 ";
4719      if (TRK2)
4720        cout << "TRK2 ";
4721      if (TRKh)
4722        cout << "TRKH ";
4723      if (CAL1)
4724        cout << "CAL1 ";
4725      if (CAL2)
4726        cout << "CAL2 ";
4727      if (TOF)
4728        cout << "TOF ";
4729      if (TRG)
4730        cout << "TRG ";
4731      if (AC)
4732        cout << "AC ";
4733      if (ND)
4734        cout << "ND ";
4735      if (S4)
4736        cout << "S4 ";
4737      if (ORB)
4738        cout << "ORB ";
4739      if (GP)
4740        cout << "GP ";
4741      cout << endl;
4742    
4743      return;
4744    
4745    }
4746    ;
4747    
4748  //--------------------------------------  //--------------------------------------
4749  //  //
4750  //  //
# Line 927  void PamLevel2::SetWhichTrees(TString de Line 4754  void PamLevel2::SetWhichTrees(TString de
4754   * @param name File name   * @param name File name
4755   * @return true if the file is ok.   * @return true if the file is ok.
4756   */   */
4757  Bool_t  PamLevel2::CheckLevel2File(TString name){  Bool_t PamLevel2::CheckLevel2File(TString name) {
           
         Bool_t CAL__ok = false;  
         Bool_t TRK__ok = false;  
         Bool_t TRK_L1__ok = false;  
         Bool_t TRG__ok = false;  
         Bool_t TOF__ok = false;  
         Bool_t S4__ok  = false;  
         Bool_t ND__ok  = false;  
         Bool_t AC__ok  = false;  
         Bool_t ORB__ok = false;  
           
         Bool_t RUN__ok = false;  
           
         TFile *f = new TFile(name.Data());  
         TList *lk = f->GetListOfKeys();  
 //      lk->Print();  
         TIter next(lk);  
         TKey *key =0;  
         while( (key = (TKey*)next()) ){  
 //              cout << key->GetName() << endl;  
                 if( !strcmp(key->GetName(),"Calorimeter") )CAL__ok = true;  
 //              if( !strcmp(key->GetName(),"Tracker"    ) )TRK__ok = true;  
                 if( !strcmp(key->GetName(),"Trigger"    ) )TRG__ok = true;  
                 if( !strcmp(key->GetName(),"ToF"        ) )TOF__ok = true;  
                 if( !strcmp(key->GetName(),"S4"         ) )S4__ok = true;  
                 if( !strcmp(key->GetName(),"NeutronD"   ) )ND__ok = true;  
                 if( !strcmp(key->GetName(),"Anticounter") )AC__ok = true;  
                 if( !strcmp(key->GetName(),"OrbitalInfo") )ORB__ok = true;  
                 if( !strcmp(key->GetName(),"Run"        ) )RUN__ok = true;  
                   
                 if( !strcmp(key->GetName(),"Tracker"    ) ){  
                         TRK__ok = true;  
                         TTree *T = (TTree*)f->Get("Tracker");  
                         for(Int_t i=0; i<T->GetListOfBranches()->GetEntries(); i++){  
                                 TString name = T->GetListOfBranches()->At(i)->GetName();  
                                 if( !name.CompareTo("TrkLevel1") )TRK_L1__ok=true;  
                         };  
                 };  
4758    
4759          };    Bool_t CAL1__ok = false;
4760                      Bool_t CAL2__ok = false;
4761          lk->Delete();    Bool_t TRK2__ok = false;
4762          f->Close();    Bool_t TRK1__ok = false;
4763              Bool_t TRKh__ok = false;
4764          Bool_t FLAG = true;    Bool_t TRG__ok = false;
4765          if(!RUN__ok) {    Bool_t TOF__ok = false;
4766                  cout << "File: "<< f->GetName() <<" discarded ---- Missing RunInfo tree"<< endl;    Bool_t S4__ok = false;
4767                  FLAG = false;    Bool_t ND__ok = false;
4768          };    Bool_t AC__ok = false;
4769          if(CAL && !CAL__ok){    Bool_t ORB__ok = false;
4770                  cout << "File: "<< f->GetName() <<" discarded ---- Missing Calorimeter tree"<< endl;    Bool_t GP__ok = false;
4771                  FLAG = false;  
4772          };    Bool_t RUN__ok = false;
4773          if(TRK && !TRK__ok){  
4774                  cout << "File: "<< f->GetName() <<" discarded ---- Missing Tracker tree"<< endl;    Bool_t SELLI__ok = false;
4775                  FLAG = false;  
4776          };    //    cout << "Checking file: "<<name<<endl;
4777          if(TRK_L1 && !TRK_L1__ok){    TFile *f = new TFile(name.Data());
4778                  cout << "File: "<< f->GetName() <<" discarded ---- Missing Tracker Level1 Branch"<< endl;    if (!f || f->IsZombie()) {
4779                  FLAG = false;      cout << "File: " << f->GetName() << " discarded ---- Non valid root file" << endl;
4780          };      return false;
4781          if(TRG && !TRG__ok){    }
4782                  cout << "File: "<< f->GetName() <<" discarded ---- Missing Trigger tree"<< endl;    //    cout << "Get list of keys: "<<f<<endl;
4783                  FLAG = false;    TList *lk = f->GetListOfKeys();
4784          };    //    lk->Print();
4785          if(TOF && !TOF__ok){    TIter next(lk);
4786                  cout << "File: "<< f->GetName() <<" discarded ---- Missing ToF tree"<< endl;    TKey *key = 0;
4787                  FLAG = false;  
4788          };    Int_t nev = 0;
4789          if(S4 && !S4__ok){  
4790                  cout << "File: "<< f->GetName() <<" discarded ---- Missing S4 tree"<< endl;    while ((key = (TKey*) next())) {
4791                  FLAG = false;  
4792          };      //  cout << key->GetName() << endl;
4793          if(ND && !ND__ok){      //  cout << key->GetName() << ""<<key->GetClassName()<<endl;
4794                  cout << "File: "<< f->GetName() <<" discarded ---- Missing ND tree"<< endl;      //          cout << " Get tree: " << f->Get(key->GetName())<<endl;
4795                  FLAG = false;      //  nev_previous = nev;
4796          };      //  cout << " n.entries  "<< nev <<endl;
4797          if(AC && !AC__ok){      //  if( key->GetClassName()=="TTree" && nev_previous && nev != nev_previous ){
4798                  cout << "File: "<< f->GetName() <<" discarded ---- Missing AC tree"<< endl;      //      nev = ((TTree*)f->Get(key->GetName()))->GetEntries();
4799                  FLAG = false;      //      cout << "File: "<< f->GetName() <<" discarded ---- "<< key->GetName() << " tree: n.entries does not match "<<nev<<" "<<nev_previous<< endl;
4800          };      //      return false;
4801          if(ORB && !ORB__ok){      //  };
4802                  cout << "File: "<< f->GetName() <<" discarded ---- Missing ORB tree"<< endl;  
4803                  FLAG = false;      //=========================================================
4804          };      // check if the file
4805            
4806          return FLAG;  
4807                if (!strcmp(key->GetName(), "Run"))
4808  };        RUN__ok = true;
4809    
4810        //=========================================================
4811        if (!strcmp(key->GetName(), "SelectionList")) {
4812          SELLI__ok = true;
4813          if (SELLI == 1) {
4814            Int_t nevt = ((TTree*) f->Get("SelectionList"))->GetEntries();
4815            if (nev && nevt != nev) {
4816              cout << "File: " << f->GetName() << " discarded ---- SelectionList tree has " << nevt
4817                  << " events instead of " << nev << endl;
4818              return false;
4819            }
4820            nev = nevt;
4821          }
4822        }
4823    
4824        //=========================================================
4825        if (!strcmp(key->GetName(), "Trigger")) {
4826          TRG__ok = true;
4827          if (TRG) {
4828            Int_t nevt = ((TTree*) f->Get("Trigger"))->GetEntries();
4829            if (nev && nevt != nev) {
4830              cout << "File: " << f->GetName() << " discarded ---- Trigger tree has " << nevt << " events instead of "
4831                  << nev << endl;
4832              return false;
4833            }
4834            nev = nevt;
4835          }
4836        }
4837        //=========================================================
4838        if (!strcmp(key->GetName(), "ToF")) {
4839          TOF__ok = true;
4840          if (TOF) {
4841            Int_t nevt = ((TTree*) f->Get("ToF"))->GetEntries();
4842            if (nev && nevt != nev) {
4843              cout << "File: " << f->GetName() << " discarded ---- ToF tree has " << nevt << " events instead of " << nev
4844                  << endl;
4845              return false;
4846            }
4847            nev = nevt;
4848          }
4849        }
4850        //=========================================================
4851        if (!strcmp(key->GetName(), "S4")) {
4852          S4__ok = true;
4853          if (S4) {
4854            Int_t nevt = ((TTree*) f->Get("S4"))->GetEntries();
4855            if (nev && nevt != nev) {
4856              cout << "File: " << f->GetName() << " discarded ---- S4 tree has " << nevt << " events instead of " << nev
4857                  << endl;
4858              return false;
4859            }
4860            nev = nevt;
4861          }
4862        }
4863        //=========================================================
4864    
4865        if (!strcmp(key->GetName(), "NeutronD")) {
4866          ND__ok = true;
4867          if (ND) {
4868            Int_t nevt = ((TTree*) f->Get("NeutronD"))->GetEntries();
4869            if (nev && nevt != nev) {
4870              cout << "File: " << f->GetName() << " discarded ---- NeutronD tree has " << nevt << " events instead of "
4871                  << nev << endl;
4872              return false;
4873            }
4874            nev = nevt;
4875          }
4876        }
4877        //=========================================================
4878        if (!strcmp(key->GetName(), "Anticounter")) {
4879          AC__ok = true;
4880          if (AC) {
4881            Int_t nevt = ((TTree*) f->Get("Anticounter"))->GetEntries();
4882            if (nev && nevt != nev) {
4883              cout << "File: " << f->GetName() << " discarded ---- Anticounter tree has " << nevt << " events instead of "
4884                  << nev << endl;
4885              return false;
4886            }
4887            nev = nevt;
4888          }
4889        }
4890        //=========================================================
4891        if (!strcmp(key->GetName(), "OrbitalInfo")) {
4892          ORB__ok = true;
4893          if (ORB) {
4894            Int_t nevt = ((TTree*) f->Get("OrbitalInfo"))->GetEntries();
4895            if (nev && nevt != nev) {
4896              cout << "File: " << f->GetName() << " discarded ---- OrbitalInfo tree has " << nevt << " events instead of "
4897                  << nev << endl;
4898              return false;
4899            }
4900            nev = nevt;
4901          }
4902        }
4903        //=========================================================
4904        if (!strcmp(key->GetName(), "Tracker")) {
4905          TTree *T = (TTree*) f->Get("Tracker");
4906          if (TRK1 || TRK2 || TRKh) {
4907            Int_t nevt = T->GetEntries();
4908            if (nev && nevt != nev) {
4909              cout << "File: " << f->GetName() << " discarded ---- Tracker tree has " << nevt << " events instead of "
4910                  << nev << endl;
4911              return false;
4912            }
4913            nev = nevt;
4914          }
4915          for (Int_t i = 0; i < T->GetListOfBranches()->GetEntries(); i++) {
4916            TString name = T->GetListOfBranches()->At(i)->GetName();
4917            if (!name.CompareTo("TrkLevel1"))
4918              TRK1__ok = true;
4919            if (!name.CompareTo("TrkLevel2"))
4920              TRK2__ok = true;
4921            if (!name.CompareTo("TrkHough"))
4922              TRKh__ok = true;
4923          };
4924          T->Delete();
4925        };
4926        //=========================================================
4927        if (!strcmp(key->GetName(), "Calorimeter")) {
4928          TTree *T = (TTree*) f->Get("Calorimeter");
4929          if (CAL1 || CAL2) {
4930            Int_t nevt = T->GetEntries();
4931            if (nev && nevt != nev) {
4932              cout << "File: " << f->GetName() << " discarded ---- Calorimeter tree has " << nevt << " events instead of "
4933                  << nev << endl;
4934              return false;
4935            }
4936            nev = nevt;
4937          }
4938          for (Int_t i = 0; i < T->GetListOfBranches()->GetEntries(); i++) {
4939            TString name = T->GetListOfBranches()->At(i)->GetName();
4940            if (!name.CompareTo("CaloLevel1"))
4941              CAL1__ok = true;
4942            if (!name.CompareTo("CaloLevel2"))
4943              CAL2__ok = true;
4944          };
4945          T->Delete();
4946        };
4947        //=========================================================
4948        if (!strcmp(key->GetName(), "h20")) {
4949          ISGP = true;
4950          GP__ok = true;
4951          if (GP) {
4952            Int_t nevt = ((TTree*) f->Get("h20"))->GetEntries();
4953            if (nev && nevt != nev) {
4954              cout << "File: " << f->GetName() << " discarded ---- h20 tree has " << nevt << " events instead of " << nev
4955                  << endl;
4956              return false;
4957            }
4958            nev = nevt;
4959          }
4960        }
4961    
4962      };
4963    
4964      if (SELLI == -1)
4965        SELLI = (Int_t) SELLI__ok;
4966      if (SELLI == 0 && SELLI__ok) {
4967        cout << "File: " << f->GetName() << " discarded ---- found SelectionList (it is not a full-event file)" << endl;
4968        return false;
4969      }
4970      if (SELLI == 1 && !SELLI__ok) {
4971        cout << "File: " << f->GetName() << " discarded ---- SelectionList missing" << endl;
4972        return false;
4973      }
4974    
4975      //    cout << "SELLI "<<SELLI<<endl;
4976    
4977      //     cout<< "CheckLevel2File(TString): detector list --> ";
4978      //     if(TRK1__ok)cout<<"TRK1 ";
4979      //     if(TRK2__ok)cout<<"TRK2 ";
4980      //     if(TRKh__ok)cout<<"TRKH ";
4981      //     if(CAL1__ok)cout<<"CAL1 ";
4982      //     if(CAL2__ok)cout<<"CAL2 ";
4983      //     if(TOF__ok)cout<<"TOF ";
4984      //     if(TRG__ok)cout<<"TRG ";
4985      //     if(AC__ok)cout<<"AC ";
4986      //     if(ND__ok)cout<<"ND ";
4987      //     if(S4__ok)cout<<"S4 ";
4988      //     if(ORB__ok)cout<<"ORB ";
4989      //     cout << endl;
4990    
4991    
4992      if (TRK2 && TRK1__ok)
4993        TRK1 = 1;
4994      // ----------------------------------------------------------------------------
4995      // NOTA
4996      // se c'e` il level1, lo devo necessarimente leggere.
4997      // infatti (non ho capito perche`) i cluster vengono letti e allocati in memoria
4998      // comunque, ma non vengono disallocati da PamLevel2::Clear()
4999      // ----------------------------------------------------------------------------
5000    
5001    
5002      if (!RUN__ok) {
5003        cout << "File: " << f->GetName() << " *WARNING* ---- Missing RunInfo tree (NB: RUN infos will not be updated)"
5004            << endl;
5005        RUN = false;
5006      };
5007    
5008      if (CAL1 && !CAL1__ok) {
5009        cout << "File: " << f->GetName() << " discarded ---- Missing CaloLevel1 branch" << endl;
5010        return false;
5011      };
5012      if (CAL2 && !CAL2__ok) {
5013        cout << "File: " << f->GetName() << " discarded ---- Missing CaloLevel2 branch" << endl;
5014        return false;
5015      };
5016      if (TRK2 && !TRK2__ok) {
5017        cout << "File: " << f->GetName() << " discarded ---- Missing TrkLevel2 branch" << endl;
5018        return false;
5019      };
5020      if (TRK1 && !TRK1__ok) {
5021        cout << "File: " << f->GetName() << " discarded ---- Missing TrkLevel1 branch" << endl;
5022        return false;
5023      };
5024      if (TRKh && !TRKh__ok) {
5025        cout << "File: " << f->GetName() << " discarded ---- Missing TrkHough branch" << endl;
5026        return false;
5027      };
5028      if (ORB && !ORB__ok) {
5029        cout << "File: " << f->GetName() << " discarded ---- Missing ORB tree" << endl;
5030        return false;
5031      };
5032      if (AC && !AC__ok) {
5033        cout << "File: " << f->GetName() << " discarded ---- Missing AC tree" << endl;
5034        return false;
5035      };
5036      if (S4 && !S4__ok) {
5037        cout << "File: " << f->GetName() << " discarded ---- Missing S4 tree" << endl;
5038        return false;
5039      };
5040      if (TOF && !TOF__ok) {
5041        cout << "File: " << f->GetName() << " discarded ---- Missing ToF tree" << endl;
5042        return false;
5043      };
5044    
5045      if (ND && !ND__ok) {
5046        cout << "File: " << f->GetName() << " discarded ---- Missing ND tree" << endl;
5047        return false;
5048      };
5049      if (TRG && !TRG__ok) {
5050        cout << "File: " << f->GetName() << " discarded ---- Missing Trigger tree" << endl;
5051        return false;
5052      };
5053      if (GP && !GP__ok) {
5054        cout << "File: " << f->GetName() << " discarded ---- Missing h20 tree" << endl;
5055        return false;
5056      };
5057    
5058      //    lk->Delete();
5059      //    delete lk;
5060      f->Close();
5061    
5062      //     cout<< "CheckLevel2File(TString): detector list --> ";
5063      //     if(TRK1)cout<<"TRK1 ";
5064      //     if(TRK2)cout<<"TRK2 ";
5065      //     if(TRKh)cout<<"TRKH ";
5066      //     if(CAL1)cout<<"CAL1 ";
5067      //     if(CAL2)cout<<"CAL2 ";
5068      //     if(TOF)cout<<"TOF ";
5069      //     if(TRG)cout<<"TRG ";
5070      //     if(AC)cout<<"AC ";
5071      //     if(ND)cout<<"ND ";
5072      //     if(S4)cout<<"S4 ";
5073      //     if(ORB)cout<<"ORB ";
5074      //     if(GP)cout<<"GP ";
5075      //     cout << endl;
5076    
5077      return true;
5078    
5079    }
5080    ;
5081    
5082    /**
5083     * Create clone-trees
5084     */
5085    void PamLevel2::CreateCloneTrees0(TChain *fChain, TFile *ofile) {
5086    
5087      cout << "+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+" << endl;
5088      cout << "Create clones of PAMELA trees " << endl;
5089    
5090      Int_t i = 0;
5091      pam_tree_clone[i] = fChain->GetTree()->CloneTree(0);
5092      TString name = pam_tree_clone[i]->GetName();
5093      name.Append("_clone");
5094      //    pam_tree_clone[i]->SetName(name.Data());
5095      cout << pam_tree_clone[i]->GetName() << endl;
5096      i++;
5097    
5098      TList *li = fChain->GetListOfFriends();
5099      TIter next(li);
5100      TFriendElement* T_friend = 0;
5101      ofile->cd();
5102      while ((T_friend = (TFriendElement*) next())) {
5103        //  cout<<T_friend->IsA()->GetName()<<" "<<T_friend->GetName()<<hex << T_friend->GetTree() << dec<<endl;
5104        //  cout<<T_friend->GetTree()->GetName()<< endl;
5105        pam_tree_clone[i] = T_friend->GetTree()->CloneTree(0);
5106        pam_tree_clone[i]->SetAutoSave(1000000);
5107        name = pam_tree_clone[i]->GetName();
5108        name.Append("_clone");
5109        //  pam_tree_clone[i]->SetName(name.Data());
5110        cout << pam_tree_clone[i]->GetName() << endl;
5111        i++;
5112      }
5113    
5114      delete li;
5115    
5116      cout << "+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+" << endl;
5117    
5118    }
5119    
5120    /**
5121     * Create clone-trees
5122     */
5123    void PamLevel2::CreateCloneTrees(TFile *ofile) {
5124    
5125      //  if the pointer is null, create a default file
5126      if (!run_tree)
5127        return;
5128    
5129      if (!ofile) {
5130        cout << "void PamLevel2::CreateCloneTrees(TFile*) -- WARNING -- Creating file: clone-tree.root " << endl;
5131        ofile = new TFile("clone-tree.root", "recreate");
5132      }
5133    
5134      ofile->cd();
5135    
5136      cout << "+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+" << endl;
5137      cout << "Create new PAMELA trees " << endl;
5138    
5139      run_tree_clone = new TTree("Run", "PAMELA Level2 data from the GL_RUN table ");
5140      run_tree_clone->Branch("RunInfo", "GL_RUN", GetPointerTo("RunInfo"));
5141      cout << "Run          : branch RunInfo" << endl;
5142      run_tree_clone->Branch("SoftInfo", "SoftInfo", GetPointerTo("SoftInfo"));
5143      cout << "Run          : branch SoftInfo" << endl;
5144      // ------------------
5145      // replicate run tree
5146      // ------------------
5147      //    cout << "----------------------------------------------------"<<endl;
5148      //    cout << "irun\t | RUN\t NEVENTS\t absolute time"<<endl;
5149      for (Int_t i = 0; i < run_tree->GetEntries(); i++) {
5150        run_tree->GetEntry(i);
5151        //  cout << i<< "\t | "<<GetRunInfo()->ID<<"\t "<<GetRunInfo()->NEVENTS<< "\t "<<GetRunInfo()->RUNHEADER_TIME<<" <---> "<<GetRunInfo()->RUNTRAILER_TIME<<endl;
5152        run_tree_clone->Fill();
5153      }
5154      cout << "----------------------------------------------------" << endl;
5155    
5156      // ------------------------------------
5157      // add branch with dead and live times
5158      // ------------------------------------
5159      if (SELLI != 2) { // EMILIANO
5160        run_tree_clone->Branch("DeadLiveTime", totdltime, "dltime[3]/l");
5161        cout << "Run          : branch DeadLiveTime" << endl;
5162    
5163        sel_tree_clone = new TTree("SelectionList", "List of selected events ");
5164        //    sel_tree_clone->Branch("RunEntry",&irun,"runentry/L");
5165        sel_tree_clone->Branch("RunEntry", &irunt, "runentry/L");//NEWNEW
5166        sel_tree_clone->Branch("EventEntry", &irunentry, "eventry/L");
5167        //    if ( hasL0EE ) sel_tree_clone->Branch("L0EventEntry", &il0entry, "l0eventry/L");
5168      };
5169    
5170      Int_t i = 0;
5171      if (TRK1 || TRK2 || TRKh) {
5172        pam_tree_clone[i] = new TTree("Tracker", "PAMELA tracker level2 data ");
5173        if (TRK1) {
5174          pam_tree_clone[i]->Branch("TrkLevel1", "TrkLevel1", GetPointerTo("TrkLevel1"));
5175          pam_tree_clone[i]->BranchRef();
5176          cout << "Tracker      : branch TrkLevel1" << endl;
5177          //            cout << "CreateCloneTrees " << GetTrkLevel1()<<endl;
5178        };
5179        if (TRK2) {
5180          pam_tree_clone[i]->Branch("TrkLevel2", "TrkLevel2", GetPointerTo("TrkLevel2"));
5181          cout << "Tracker      : branch TrkLevel2" << endl;
5182        };
5183        if (TRKh) {
5184          pam_tree_clone[i]->Branch("TrkHough", "TrkHough", GetPointerTo("TrkHough"));
5185          cout << "Tracker      : branch TrkHough" << endl;
5186        };
5187        if(NUC){
5188            pam_tree_clone[i]->Branch("TrackNuclei","TClonesArray",&trk_nuc_obj);
5189            cout << "Tracker      : branch TrackNuclei" << endl;    
5190        }
5191        if(EXT){
5192            pam_tree_clone[i]->Branch("extAlgFlag",&extAlgFlag,"extAlgFlag/I");
5193            pam_tree_clone[i]->Branch("RecoveredTrack","TClonesArray",&trk_ext_obj);
5194            cout << "Tracker      : branch RecoveredTrack" << endl;
5195            if(NUC){
5196                pam_tree_clone[i]->Branch("RecoveredTrackNuclei","TClonesArray",&trk_ext_nuc_obj);
5197                cout << "Tracker      : branch RecoveredTrackNuclei" << endl;                  
5198            }
5199        }
5200    
5201        i++;
5202      }
5203    
5204      // Calorimeter
5205      if (CAL1 || CAL2) {
5206        pam_tree_clone[i] = new TTree("Calorimeter", "PAMELA calorimeter level2 data ");
5207        if (CAL1) {
5208          pam_tree_clone[i]->Branch("CaloLevel1", "CaloLevel1", GetPointerTo("CaloLevel1"));
5209          cout << "Calorimeter  : branch CaloLevel1" << endl;
5210        };
5211        if (CAL2) {
5212          pam_tree_clone[i]->Branch("CaloLevel2", "CaloLevel2", GetPointerTo("CaloLevel2"));
5213          cout << "Calorimeter  : branch CaloLevel2" << endl;
5214        };
5215        if(NUC){
5216            pam_tree_clone[i]->Branch("TrackNuclei","TClonesArray",&calo_nuc_obj);
5217            cout << "Calorimeter  : branch TrackNuclei" << endl;    
5218        }
5219        if(EXT){
5220            pam_tree_clone[i]->Branch("RecoveredTrack","TClonesArray",&calo_ext_obj);
5221            cout << "Calorimeter  : branch RecoveredTrack" << endl;
5222            if(NUC){
5223                pam_tree_clone[i]->Branch("RecoveredTrackNuclei","TClonesArray",&calo_ext_nuc_obj);
5224                cout << "Calorimeter  : branch RecoveredTrackNuclei" << endl;                  
5225            }
5226        }
5227        i++;
5228      }
5229    
5230      // ToF
5231      if (TOF) {
5232        pam_tree_clone[i] = new TTree("ToF", "PAMELA ToF level2 data ");
5233        pam_tree_clone[i]->Branch("ToFLevel2", "ToFLevel2", GetPointerTo("ToFLevel2"));
5234        cout << "ToF          : branch ToFLevel2" << endl;
5235        if(NUC){
5236            pam_tree_clone[i]->Branch("TrackNuclei","TClonesArray",&tof_nuc_obj);
5237            cout << "ToF          : branch TrackNuclei" << endl;    
5238        }
5239        if(EXT){
5240            pam_tree_clone[i]->Branch("RecoveredTrack","TClonesArray",&tof_ext_obj);
5241            cout << "ToF          : branch RecoveredTrack" << endl;
5242            if(NUC){
5243                pam_tree_clone[i]->Branch("RecoveredTrackNuclei","TClonesArray",&tof_ext_nuc_obj);
5244                cout << "ToF          : branch RecoveredTrackNuclei" << endl;                  
5245            }
5246        }
5247        i++;
5248      };
5249      // Trigger
5250      if (TRG) {
5251        pam_tree_clone[i] = new TTree("Trigger", "PAMELA trigger level2 data ");
5252        pam_tree_clone[i]->Branch("TrigLevel2", "TrigLevel2", GetPointerTo("TrigLevel2"));
5253        cout << "Trigger      : branch TrigLevel2" << endl;
5254        i++;
5255      };
5256      // S4
5257      if (S4) {
5258        pam_tree_clone[i] = new TTree("S4", "PAMELA S4 level2 data ");
5259        pam_tree_clone[i]->Branch("S4Level2", "S4Level2", GetPointerTo("S4Level2"));
5260        cout << "S4           : branch S4Level2" << endl;
5261        i++;
5262      };
5263      // Neutron Detector
5264      if (ND) {
5265        pam_tree_clone[i] = new TTree("NeutronD", "PAMELA neutron detector level2 data ");
5266        pam_tree_clone[i]->Branch("NDLevel2", "NDLevel2", GetPointerTo("NDLevel2"));
5267        cout << "NeutronD     : branch NDLevel2" << endl;
5268        i++;
5269      };
5270      // Anticounters
5271      if (AC) {
5272        pam_tree_clone[i] = new TTree("Anticounter", "PAMELA anticounter detector level2 data ");
5273        pam_tree_clone[i]->Branch("AcLevel2", "AcLevel2", GetPointerTo("AcLevel2"));
5274        cout << "Anticounter  : branch AcLevel2" << endl;
5275        i++;
5276      };
5277      // OrbitalInfo
5278      if (ORB) {
5279        pam_tree_clone[i] = new TTree("OrbitalInfo", "PAMELA orbital info  ");
5280        pam_tree_clone[i]->Branch("OrbitalInfo", "OrbitalInfo", GetPointerTo("OrbitalInfo"));
5281        cout << "OrbitalInfo  : branch OrbitalInfo" << endl;
5282        if(NUC){
5283            pam_tree_clone[i]->Branch("TrackNuclei","TClonesArray",&orb_nuc_obj);
5284            cout << "OrbitalInfo  : branch TrackNuclei" << endl;    
5285        }
5286        if(EXT){
5287            pam_tree_clone[i]->Branch("RecoveredTrack","TClonesArray",&orb_ext_obj);
5288            cout << "OrbitalInfo  : branch RecoveredTrack" << endl;
5289            if(NUC){
5290                pam_tree_clone[i]->Branch("RecoveredTrackNuclei","TClonesArray",&orb_ext_nuc_obj);
5291                cout << "OrbitalInfo  : branch RecoveredTrackNuclei" << endl;                  
5292            }
5293        }
5294        i++;
5295      };
5296      // GPamela
5297      if (GP) {
5298        pam_tree_clone[i] = new TTree("h20", "GPAMELA info ");
5299        pam_tree_clone[i]->Branch("GPamela", "GPamela", GetPointerTo("GPamela"), 32000, 1);//split
5300        cout << "GPamela  : branch GPamela" << endl;
5301        i++;
5302      };
5303    
5304    
5305      cout << "+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+" << endl;
5306    
5307    }
5308    
5309    /**
5310     * Fill tree (created with CreateCloneTrees)
5311     *
5312     */
5313    //void PamLevel2::FillNewPamTree(TTree *T){
5314    void PamLevel2::FillCloneTrees() {
5315    
5316      //    cout << "PamLevel2::FillCloneTrees()" << irunentry << endl;
5317    
5318      for (Int_t i = 0; i < NCLONES; i++) {
5319        if (pam_tree_clone[i])
5320          pam_tree_clone[i]->Fill();
5321      }
5322      if (sel_tree_clone)
5323        sel_tree_clone->Fill();
5324    
5325    }
5326    
5327    TTree* PamLevel2::GetCloneTree(TString name) {
5328    
5329      for (Int_t i = 0; i < NCLONES; i++) {
5330        if (pam_tree_clone[i]) {
5331          TString na = pam_tree_clone[i]->GetName();
5332          if (!name.CompareTo(na))
5333            return pam_tree_clone[i];
5334        };
5335      }
5336      if (run_tree_clone) {
5337        TString na = run_tree_clone->GetName();
5338        if (!name.CompareTo(na))
5339          return run_tree_clone;
5340      }
5341      if (sel_tree_clone) {
5342        TString na = sel_tree_clone->GetName();
5343        if (!name.CompareTo(na))
5344          return sel_tree_clone;
5345      }
5346      return NULL;
5347    
5348    }
5349    void PamLevel2::WriteCloneTrees() {
5350      cout << "+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+" << endl;
5351      cout << "Write clones of PAMELA trees " << endl;
5352      cout << run_tree_clone->GetName() << endl;
5353      if (SELLI != 2) {// Emiliano
5354        if (run_tree_clone->GetBranch("DeadLiveTime")->GetEntries() < run_tree->GetEntries())
5355          run_tree_clone->GetBranch("DeadLiveTime")->Fill();
5356      };
5357      run_tree_clone->Write();
5358      if (SELLI != 2) { //Emiliano
5359        cout << sel_tree_clone->GetName() << endl;
5360        sel_tree_clone->Write();
5361      };
5362      for (Int_t i = 0; i < NCLONES; i++) {
5363        if (pam_tree_clone[i]) {
5364          cout << pam_tree_clone[i]->GetName() << endl;
5365          pam_tree_clone[i]->Write();
5366        };
5367      }
5368      cout << "+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+" << endl;
5369    
5370    }
5371    
5372    /**
5373     * Method to get level2-trees entry, the corresponding run entry and (if required) the level0 entry.
5374     */
5375    Int_t PamLevel2::GetEntry(Long64_t iee) {
5376    
5377      if (!pam_tree) {
5378        cout << " Int_t PamLevel2::GetEntry(Int_t) -- ERROR -- level2 trees not loaded" << endl;
5379        return 0;
5380      }
5381    
5382      //
5383      // This is a sort of bug: if you don't have the run tree you don't want to exit here you want to have loaded the event anyway...
5384      //
5385      //    if(!run_tree ){
5386      //    cout << " Int_t PamLevel2::GetEntry(Int_t) -- ERROR -- run tree not loeaded"<<endl;
5387      //    return 0;
5388      //    }
5389    
5390      //-------------------------------
5391      if (!pam_tree->GetEntry(iee)) {
5392        cout << " Int_t PamLevel2::GetEntry(Int_t) -- ERROR -- error reading pam tree" << endl;
5393        return 0;
5394      }
5395      //
5396      // ... that's way I put it here. Notice that nothing change in the code (is backward compatible) since in any case you return with 0.
5397      // in theory one would like to return 1 if run is not loaded but now I don't have the will to add that 2 lines of code and it is not
5398      // a problem if you don't check the return code of getentry.
5399      //
5400      if (!RUN || !run_tree) {
5401        if (TRK0 || CAL0 || TOF0 || RUN) { //forse cosi` va bene per tornare 1?
5402          cout << " Int_t PamLevel2::GetEntry(Int_t) -- ERROR -- run tree not loaded" << endl;
5403          return 0;
5404        }
5405        else {
5406          return 1; //cosi` se non c'e` run esce qua...
5407        }
5408      }
5409    
5410      //-------------------------------
5411      //
5412      if ( fUpdateRunInfo ) UpdateRunInfo(iee); // Emiliano
5413      if (SELLI == 0 || SELLI == 2) irunentry = iee - runfirstentry;
5414    
5415      return 1;
5416    
5417    }
5418    
5419    TrkLevel0 *PamLevel2::GetTrkLevel0() {
5420      if (!TRK0)
5421        return NULL;
5422      if (!GetYodaEntry()) {
5423        cout << " Int_t PamLevel2::GetTrkLevel0() -- ERROR -- error reading level0 tree" << endl;
5424        return 0;
5425      }
5426      return trk0_obj;
5427    }
5428    ;
5429    CaloLevel0 *PamLevel2::GetCaloLevel0() {
5430      if (!CAL0)
5431        return NULL;
5432      if (!GetYodaEntry()) {
5433        cout << " Int_t PamLevel2::GetCaloLevel0() -- ERROR -- error reading level0 tree" << endl;
5434        return 0;
5435      }
5436      return calo0_obj;
5437    }
5438    ;
5439    
5440    /**
5441     * Method to retrieve the level0 tree (YODA tree) that contains the current event.
5442     * Given the run ID (...), if needed it query the DB and load the proper file.
5443     * @return Pointer to the tree
5444     */
5445    
5446    TTree* PamLevel2::GetYodaTree() {
5447    
5448      //    cout << "TTree* PamLevel2::GetYodaTree( )"<<endl;
5449      //===================================
5450      // check if iroot has changed
5451      //===================================
5452      if (irun < 0) {
5453        cout << "PamLevel2::GetYodaTree() -- ERROR -- irun = " << irun << endl;
5454        if (DBG) cout << "In order to use this method you have to first load the RunInfo tree "<<endl;
5455        return NULL;
5456      }
5457      Int_t irootnew = GetRunInfo()->ID_ROOT_L0;
5458      if (DBG){
5459        cout << "iroot    "<<iroot<<endl;
5460        cout << "irootnew "<<irootnew<<endl;
5461      }
5462    
5463      //===================================
5464      // load the level0 file
5465      // (if not already loaded)
5466      //===================================
5467      if (iroot != irootnew || !l0_tree) {
5468        iroot = irootnew;
5469        //===================================
5470        // open the DB connection
5471        // (if not already opened)
5472        //===================================
5473        if (!dbc || (dbc && !dbc->IsConnected()))
5474          SetDBConnection();
5475        GL_ROOT glroot = GL_ROOT();
5476        if (glroot.Query_GL_ROOT(iroot, dbc)) {
5477          cout << "TTree* PamLevel2::GetYodaTree( ) -- ERROR -- level0 file iroot = " << iroot << " does not exists"
5478              << endl;
5479          return NULL;
5480        };
5481        TString filename = glroot.PATH + glroot.NAME;
5482        if (l0_file) {
5483          l0_file->Close();
5484          l0_file->Delete();
5485        }
5486        cout << "Opening LEVEL0 file: " << filename << endl;
5487        FileStat_t t;
5488        if (gSystem->GetPathInfo(filename.Data(), t)) {
5489          cout << " PamLevel2::GetYodaTree() -- ERROR opening file " << endl;
5490          return NULL;
5491        }
5492        l0_file = new TFile(filename);
5493        if (!l0_file)
5494          return NULL;
5495        l0_tree = (TTree*) l0_file->Get("Physics");
5496        if (!h0_obj)
5497          h0_obj = new EventHeader();
5498        l0_tree->SetBranchAddress("Header", &h0_obj);
5499        yprevshift = 0; // yes, yprevshift is the shift in the level0, prevshift is the shift in the level2
5500        //---------------------------------------------------
5501        // TRACKER:
5502        if (TRK0) {
5503          if (!trk0_obj) {
5504            trk0_obj = new TrkLevel0();
5505            trk0_obj->Set();
5506          };
5507          l0_tree->SetBranchAddress("Tracker", trk0_obj->GetPointerToTrackerEvent());
5508        }
5509        //--------------------------------------------------
5510        // CALORIMETER:
5511        if (CAL0) {
5512          if (!calo0_obj) {
5513            calo0_obj = new CaloLevel0();
5514            calo0_obj->Set();
5515          };
5516          l0_tree->SetBranchAddress("Calorimeter", calo0_obj->GetPointerToCalorimeterEvent());
5517        }
5518        //---------------------------------------------------
5519        // TOF:
5520        if (TOF0) {
5521          cout << "PamLevel2::GetYodaTree() --- level0 TOF not implemented " << endl;
5522        }
5523    
5524        dbc->Close(); // EMILIANO, do not leave open connections, open only when needed
5525        delete dbc;
5526        dbc=0;
5527    
5528      };
5529    
5530      if (TRK0) {
5531        if(!dbc || (dbc && !dbc->IsConnected()))SetDBConnection();
5532        TrkParams::SetCalib(run_obj, dbc);
5533        TrkParams::LoadCalib();
5534        if (!TrkParams::CalibIsLoaded()) {
5535          cout << " TTree* PamLevel2::GetYodaTree( ) -- WARNING -- Calibration not loaded" << endl;
5536        };
5537        if(dbc){
5538          dbc->Close(); // EMILIANO, do not leave open connections, open only when needed
5539          delete dbc;
5540          dbc=0;
5541        };
5542      }
5543      return l0_tree;
5544    }
5545    
5546    /**
5547     * Method to retrieve the level0 tree (YODA tree) that contains the current event.
5548     */
5549    Int_t PamLevel2::GetYodaEntry() {
5550    
5551      Long64_t iev = this->GetReadEntry();
5552    
5553      // +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-
5554      // if it is a full file (not preselected)
5555      // +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-
5556      //  if (SELLI == 0 || SELLI == 2 || !hasL0EE) {
5557    
5558        if (!GetYodaTree()){
5559          printf(" PamLevel2::GetYodaEntry() : ERROR no level0 file loaded!\n");
5560          return 0;
5561        }
5562    
5563        if (irunentry < 0) {
5564          if (DBG) cout << "Int_t PamLevel2::GetYodaEntry() -- ATTENZIONE -- irunentry negativo?!?! "<<(Int_t)irunentry<<endl;
5565          //      cout << "Int_t PamLevel2::GetYodaEntry() -- ATTENZIONE -- irunentry negativo?!?! "<<(Int_t)irunentry<<endl; // TOGLITOGLI
5566          irunentry = 0LL;
5567        }
5568        //  ---------------------------------
5569        //  if file is NOT a preselected file
5570        //  ---------------------------------
5571        Long64_t quellagiusta = irunentry + (Long64_t)(run_obj->EV_FROM); // prevshift already included in irunentry
5572    
5573        if (DBG){
5574          cout << " irun "<< irun << " irunentry "<< irunentry<<" run_obj->EV_FROM "<<run_obj->EV_FROM <<" quella giusta "<<quellagiusta << endl;
5575          cout << " iroot "<<iroot<<" run_obj->ID_ROOT_L0 "<<run_obj->ID_ROOT_L0<<endl;
5576          cout << " time "<< abstime << endl;
5577        }
5578    
5579        ULong64_t obt = 0;
5580        ULong64_t pktn = 0;
5581        if (GetOrbitalInfo()) {
5582          obt = GetOrbitalInfo()->OBT;
5583          pktn = GetOrbitalInfo()->pkt_num;
5584        }
5585    
5586        if (!GetOrbitalInfo() && !ISGP) {
5587          cout << "Int_t PamLevel2::GetYodaEntry() -- ERROR -- missing OrbitalInfo " << endl;
5588          return 0;
5589        }
5590        if (obt == 0 && pktn == 0 && !ISGP) {
5591          cout << "Int_t PamLevel2::GetYodaEntry() -- ERROR -- level2 event corrupted ?? " << endl;
5592          return 0;
5593        }
5594    
5595        // ---------------------------------------------------------------------
5596        // ATTENTION!!!
5597        // If data are not pre-processed with cleaner, the level0 tree may contain
5598        // spurious nested physics packets.
5599        // The GL_RUN variables EV_FROM, EV_TO and NEVENTS counts also these entries
5600        // while level2 tree DOES NOT!!
5601        // This means that "quellagiusta" in these cases is not correct.
5602        // In order to retrieve the correct level0 event, I implemented a check
5603        // of the OBT and pkt-number. In case of mismatch, the level0 entry number
5604        // is shift forward until when the packets match.
5605        // ---------------------------------------------------------------------
5606        Long64_t shift = 0LL;
5607        Long64_t answer = quellagiusta + shift + yprevshift;
5608        Int_t readl0 = 0;
5609        readl0 = l0_tree->GetEntry(answer); // prevshift already included in irunentry
5610    
5611        if (DBG){
5612          printf(" siamo qui shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);
5613        }
5614    
5615    
5616        if (ISGP) {
5617          obt = (UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()); //BARBATRUCCO
5618          pktn = (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter()); //BARBATRUCCO
5619        }
5620    
5621        while ( (obt != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()) || pktn != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter())) && (quellagiusta + (Long64_t) shift) < GetYodaTree()->GetEntries() && shift < maxshift ){
5622          if ( isSync && shift == 0LL ){
5623            printf(" PamLevel2::GetYodaEntry() ERROR! sync file but the level0 entry not found in place!!! \n");
5624            cout << " OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
5625            cout << "\nFor bug reporting instructions, please see for example:\n";
5626            cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
5627            cout << "  " << endl;
5628          }
5629          if (shift > 0) {
5630            if (DBG) cout << " PKTNUM  L2 --- " << pktn << " --- L0 --- " << GetEventHeader()->GetPscuHeader()->GetCounter() << endl;
5631            if (DBG)
5632              cout << "         RUN: ID " << GetRunInfo()->ID << " ID_ROOT_L0 " << run_obj->ID_ROOT_L0 << " ID_RUN_FRAG "
5633                   << GetRunInfo()->ID_RUN_FRAG << " EV_FROM " << GetRunInfo()->EV_FROM << endl;
5634            if (DBG)
5635              cout << "         L2 <--> L0 mismatch ( irun " << irun << " irunentry " << irunentry << " shift " << shift
5636                   << " prevshift " << prevshift << " )" << endl;
5637          }
5638          answer = quellagiusta +  shift+ yprevshift;
5639          readl0 = l0_tree->GetEntry(answer);
5640          //      printf(" inside while shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);//TOGLITOGLI
5641    
5642          if (!GetEventHeader()) {
5643            cout << "Int_t PamLevel2::GetYodaEntry() -- ERROR -- missing EventHeader " << endl;
5644            return 0;
5645          }
5646    
5647          //
5648          if (yprevshift != 0 && (quellagiusta + (Long64_t) shift) == GetYodaTree()->GetEntries()) {
5649            if (DBG) printf(" reset inside while shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);
5650            //        printf(" reset inside while shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);//TOGLITOGLI
5651            yprevshift = 0LL;
5652            shift = -1LL;
5653          };
5654        
5655          shift++;
5656        }
5657                                      
5658    
5659        if ( obt != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()) || pktn != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter()) ){
5660          if ( isSync ){
5661            printf(" PamLevel2::GetYodaEntry() ERROR! sync file but the level0 entry not found AT ALL!!! \n");
5662            cout << " OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
5663            cout << "\nFor bug reporting instructions, please see for example:\n";
5664            cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
5665            cout << "  " << endl;
5666          }
5667          cout << "Int_t PamLevel2::GetYodaEntry() -- WARNING -- " << endl;
5668          cout << " Big trouble here, no such event in Level0 data! (NB maxshift set to " << maxshift << " )" << endl;    
5669          cout << " Nested and/or DarthVader skipped packets in fragmented run? checking and trying to fix " <<endl;
5670          // query the DB for runs containing the event, loop over LEVEL0 files which could contain the level0 event and try to find it
5671          // ma nel mezzo del cammin per ogni run che pesco devo vedere la posizione relativa di iev rispetto al runheader nel livello2 per andare a cercare nel posto giusto
5672          // connect to db
5673          if (!dbc || (dbc && !dbc->IsConnected())) SetDBConnection(); //Emiliano
5674          //
5675          if (GetOrbitalInfo()){
5676            abstime = GetOrbitalInfo()->absTime;
5677          } else {
5678            printf(" PamLevel2::GetYodaEntry() ERROR! no OrbitalInfo, cannot get the absolute time for event \n");
5679            return 0;
5680          }
5681          // query DB looking for runs containing the processed event
5682          TSQLResult *pResult;
5683          TSQLRow *Row = NULL;
5684          TString myquery = Form("select ID,NEVENTS from GL_RUN where RUNHEADER_TIME<=%lld and RUNTRAILER_TIME>=%lld;",abstime,abstime);
5685          if ( DBG ) printf(" query is %s \n",myquery.Data());
5686          //      printf(" query is %s \n",myquery.Data());// TOGLITOGLI
5687          pResult = dbc->Query(myquery.Data());    
5688          if (!pResult->GetRowCount()){
5689            printf(" PamLevel2::GetYodaEntry() ERROR! event is not included in any run!!! \n");
5690            cout << " OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
5691            cout << "\nFor bug reporting instructions, please see for example:\n";
5692            cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
5693            cout << "  " << endl;
5694            return 0;
5695          }
5696          if ( pResult->GetRowCount() == 1 ){
5697            if (DBG) printf(" PamLevel2::GetYodaEntry() - WARNING - YodaEntry not found but only one run containing the event, it should not happen \n");
5698            //        printf(" PamLevel2::GetYodaEntry() - WARNING - YodaEntry not found but only one run containing the event, it should not happen \n");//TOGLITOGLI
5699          }
5700          for( Int_t ru=0; ru < pResult->GetRowCount(); ru++){ // loop over runs containing the event
5701            if (Row) delete Row;
5702            Row = pResult->Next();  
5703            if( Row == NULL ) break;
5704            UInt_t idrun = (UInt_t)atoll(Row->GetField(0));
5705            UInt_t nev = (UInt_t)atoll(Row->GetField(1));
5706            if (DBG) printf(" inside loop over runs: ru %i idrun %i nev %i \n",ru,idrun,nev);
5707            //        printf(" inside loop over runs: ru %i idrun %i nev %i \n",ru,idrun,nev);//TOGLITOGLI
5708    
5709            // now look for this run in the level2 file, it must be present! code is taken from updateruninfo of course
5710            Bool_t rfound = false;
5711            totrunentry = 0LL;
5712            runfirstentry = 0LL;
5713            for (Int_t r=0; r< run_tree->GetEntries();r++){
5714              run_tree->GetEntry(r);//update runinfo
5715              if ( r > 0 ){
5716                totrunentrymin = totrunentrymax+1;
5717              } else {
5718                totrunentrymin = 0LL;
5719              }
5720              totrunentry += GetRunInfo()->NEVENTS;
5721              totrunentrymax = totrunentry - 1 - prevshift; // prevshift is needed to handle nested+DV_skipped packets
5722              irun = r;        
5723    
5724              if (idrun == GetRunInfo()->ID){
5725                if ( totrunentrymin > iev ){ // there is a shift (nested+DV_skipped packets)
5726                  if (DBG) printf("PamLevel2::GetYodaEntry - unconsistent iev - nevents, probable DBL0-L2 async\n");
5727                  if (DBG) printf("PamLevel2::GetYodaEntry - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);
5728                  //              printf("PamLevel2::GetYodaEntry - unconsistent iev - nevents, probable DBL0-L2 async\n");
5729                  //              printf("PamLevel2::GetYodaEntry - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);//TOGLITOGLI
5730                  prevshift += (totrunentrymin-iev); // add the new shift to total shift
5731                  totrunentrymin -= (totrunentrymin-iev); // shift run position min
5732                  totrunentrymax -= (totrunentrymin-iev); // shift run position max
5733                  if (DBG) printf("PamLevel2::GetYodaEntry - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);
5734                  //              printf("PamLevel2::GetYodaEntry - totrunentrymin %lld iev %lld prevshift %lld totrunentrymax %lld \n",totrunentrymin,iev,prevshift,totrunentrymax);//TOGLITOGLI
5735                }
5736                runfirstentry = totrunentrymin; // first entry of the run in the level2
5737              
5738    
5739                //
5740                if (gltsync)
5741                  delete gltsync; // Emiliano
5742                if (!dbc || (dbc && !dbc->IsConnected()))
5743                  SetDBConnection(); //Emiliano
5744                gltsync = new GL_TIMESYNC(GetRunInfo()->ID_ROOT_L0, "ID", dbc, false); // Emiliano
5745                if (dbc){
5746                  dbc->Close(); // Emiliano
5747                  delete dbc;
5748                  dbc=0;
5749                }          
5750                if (gltsync->DBobt(GetRunInfo()->RUNHEADER_OBT) > gltsync->DBobt(GetRunInfo()->RUNTRAILER_OBT)) { // Emiliano
5751                  cout << "Bool_t PamLevel2::UpdateRunInfo(Long64_t iev) -- WARNING -- irun " << irun
5752                       << "  has RUNHEADER_OBT>=RUNTRAILER_OBT " << endl;
5753                  cout
5754                    << "                                                            (NB!! in this case some events could be assigned to a wrong run)"
5755                    << endl;
5756                }
5757                //
5758                if (DBG) printf(" found \n");
5759                //            printf(" found \n");//TOGLITOGLI
5760                rfound = true;
5761                //
5762                break;
5763              }
5764            } // loop over run
5765            if ( !rfound ){
5766              printf(" PamLevel2::GetYodaEntry() ERROR! run is not present in the level2 file!!! \n");
5767              cout << " OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
5768              cout << "\nFor bug reporting instructions, please see for example:\n";
5769              cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
5770              cout << "  " << endl;        
5771              return 0;
5772            }
5773    
5774            // here we got the first run and we can check if it contains the level0 event
5775            if (!GetYodaTree()){
5776              printf(" PamLevel2::GetYodaEntry() : ERROR no level0 file loaded!\n");
5777              return 0;
5778            }      
5779    
5780            // get the current run entry
5781            irunentry = iev - runfirstentry;
5782            if (irunentry < 0) {
5783              if (DBG) cout << "Int_t PamLevel2::GetYodaEntry() -- ATTENZIONE -- irunentry negativo?!?! "<<(Int_t)irunentry<<endl;
5784              //          cout << "Int_t PamLevel2::GetYodaEntry() -- ATTENZIONE -- irunentry negativo?!?! "<<(Int_t)irunentry<<endl; // TOGLITOGLI
5785              irunentry = 0LL;
5786            }
5787            //  ---------------------------------
5788            //  if file is NOT a preselected file
5789            //  ---------------------------------
5790            quellagiusta = irunentry + (Long64_t)(run_obj->EV_FROM); // prevshift already included in irunentry
5791          
5792            if (DBG){
5793              cout << " irun "<< irun << " irunentry "<< irunentry<<" run_obj->EV_FROM "<<run_obj->EV_FROM <<" quella giusta "<<quellagiusta << endl;
5794              cout << " iroot "<<iroot<<" run_obj->ID_ROOT_L0 "<<run_obj->ID_ROOT_L0<<endl;
5795              cout << " time "<< abstime << endl;
5796            }
5797            //        cout << " irun "<< irun << " irunentry "<< irunentry<<" run_obj->EV_FROM "<<run_obj->EV_FROM <<" quella giusta "<<quellagiusta << endl;
5798            //        cout << " iroot "<<iroot<<" run_obj->ID_ROOT_L0 "<<run_obj->ID_ROOT_L0<<endl;
5799            //        cout << " time "<< abstime << endl; // TOGLITOGLI
5800          
5801            shift = 0;
5802            answer = quellagiusta + shift + yprevshift; // prevshift already included in irunentry
5803            readl0 = l0_tree->GetEntry(answer); // prevshift already included in irunentry
5804    
5805            if (DBG){
5806              printf(" siamo qua shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);
5807            }
5808            //        printf(" siamo qua shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);//TOGLITOGLI
5809          
5810            while ( (obt != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()) || pktn != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter())) && (quellagiusta + (Long64_t) shift) < GetYodaTree()->GetEntries() && shift < maxshift ){
5811              if (shift > 0) {
5812                if (DBG) cout << " PKTNUM  L2 --- " << pktn << " --- L0 --- " << GetEventHeader()->GetPscuHeader()->GetCounter() << endl;
5813                if (DBG)
5814                  cout << "         RUN: ID " << GetRunInfo()->ID << " ID_ROOT_L0 " << run_obj->ID_ROOT_L0 << " ID_RUN_FRAG "
5815                       << GetRunInfo()->ID_RUN_FRAG << " EV_FROM " << GetRunInfo()->EV_FROM << endl;
5816                if (DBG)
5817                  cout << "         L2 <--> L0 mismatch ( irun " << irun << " irunentry " << irunentry << " shift " << shift
5818                       << " prevshift " << prevshift << " )" << endl;
5819              }
5820              answer = quellagiusta +  shift+ yprevshift;
5821              readl0 = l0_tree->GetEntry(answer);
5822              //          printf(" inside inside while shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);//TOGLITOGLI
5823            
5824              if (!GetEventHeader()) {
5825                cout << "Int_t PamLevel2::GetYodaEntry() -- ERROR -- missing EventHeader " << endl;
5826                return 0;
5827              }
5828              //
5829              if (yprevshift != 0 && (quellagiusta + (Long64_t) shift) == GetYodaTree()->GetEntries()) {
5830                if (DBG) printf(" reset inside while shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);
5831                //            printf(" reset inside while shift %lld yprevshift %lld answer %lld \n",shift,yprevshift,answer);//TOGLITOGLI
5832                yprevshift = 0;
5833                shift = -1;
5834              };
5835            
5836              shift++;
5837            }
5838          
5839            if ( obt != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()) || pktn != (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter()) ){
5840              //still not the good run... continue with the nex one!
5841              printf("still not the good run... continue with the nex one!\n");
5842            } else {
5843              if (DBG) cout << "LA ENTRY GIUSTA E`: "<<quellagiusta<<" (spero...)"<<endl;
5844              //          cout << "LA ENTRY GIUSTA E`: "<<answer<<" (spero...)"<<endl;//TOGLITOGLI
5845              if (shift > 1) yprevshift = (shift - 1);
5846              if (Row) delete Row;
5847              delete pResult;  
5848              if (dbc){
5849                dbc->Close(); // Emiliano
5850                delete dbc;
5851                dbc=0;
5852              }    
5853              il0entry = answer;
5854              return readl0;
5855            }
5856            // perhaps it is all
5857          }// loop over runs containing the event
5858          if (Row) delete Row;
5859          delete pResult;  
5860          if (dbc){
5861            dbc->Close(); // Emiliano
5862            delete dbc;
5863            dbc=0;
5864          }          
5865          // arriving here it means no run found, cannot be! error!
5866          printf(" PamLevel2::GetYodaEntry() ERROR! run is not present in the level0 files!!! \n");
5867          cout << " OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
5868          cout << "\nFor bug reporting instructions, please see for example:\n";
5869          cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
5870          cout << "  " << endl;        
5871          return 0;
5872        } else {
5873          if (DBG) cout << "=> LA ENTRY GIUSTA E`: "<<answer<<" (spero...)"<<endl;
5874          //    cout << "=> LA ENTRY GIUSTA E`: "<<answer<<" (spero...)"<<endl;
5875          //    printf("obt %lld (UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()) %i  pktn %lld (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter() %i \n",obt,(UInt_t)(GetEventHeader()->GetPscuHeader()->GetOrbitalTime()), pktn, (UInt_t)(GetEventHeader()->GetPscuHeader()->GetCounter()) );
5876          if (shift > 1) yprevshift = (shift - 1);
5877          il0entry = answer;
5878          return readl0;
5879        }
5880    
5881        /*  } // if selli 0 || 2
5882      if ( SELLI == 1 && hasL0EE ){
5883        sel_tree->GetEntry(iev);  
5884        Long64_t answer = il0entry;
5885        Int_t readl0 = 0;
5886        readl0 = l0_tree->GetEntry(answer);
5887        return readl0;
5888        }*/
5889      printf(" PamLevel2::GetYodaEntry() ERROR! \n");
5890      cout << " Entry not found! OK this is a bug, write to Emiliano, Emiliano.Mocchiutti@ts.infn.it " << endl;
5891      cout << "\nFor bug reporting instructions, please see for example:\n";
5892      cout << "     <http://www.ts.infn.it/~mocchiut/bugs/bugs.html>.\n";
5893      cout << "  " << endl;
5894      return 0;
5895    }
5896    
5897    /**
5898     * \Brief Set DB connection
5899     */
5900    Bool_t PamLevel2::SetDBConnection() {
5901    
5902      //    cout << "PamLevel2::SetDBConnection()" << endl;
5903      if (DBG) {
5904        cout << "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" << endl;
5905        cout << "Connecting to DB" << endl;
5906        cout << "HOST " << host << endl;
5907        cout << "USER " << user << endl;
5908        cout << "PSW  " << psw << endl;
5909      }
5910      Bool_t notconn = true;
5911      Int_t trials = 0;
5912      while ( notconn && trials < 10 ){
5913        //    gSystem->Sleep(500);
5914        dbc = TSQLServer::Connect(host.Data(), user.Data(), psw.Data());
5915        //dbc->Connect(host.Data(), user.Data(), psw.Data());
5916        if ( dbc ) notconn = false;
5917        if (DBG) printf("<%i> test connection...\n ",trials);
5918        if (!dbc){
5919          if (DBG) printf(" :( failed, no pointer \n");
5920          notconn = true;
5921          //      return false;
5922        };
5923        if (dbc && !dbc->IsConnected()){
5924          if (DBG) printf(" :( failed, no connection \n");
5925          notconn = true;
5926          //      return false;
5927        };
5928        trials++;
5929      };
5930      if ( notconn ) return false;
5931      //
5932      if (DBG) printf("=connected!\n");
5933      stringstream myquery; // EMILIANO
5934      myquery.str(""); // EMILIANO
5935      myquery << "SET time_zone='+0:00'"; // EMILIANO
5936      dbc->Query(myquery.str().c_str()); // EMILIANO
5937      if ( DBG ) printf("~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n");
5938      return true;
5939    
5940    }
5941    
5942    /**
5943     * \Brief Add a friend to the pamela chain.
5944     * @param cname name of the chain to be added
5945     */
5946    
5947    TChain* PamLevel2::AddFriend(TString cname) {
5948    
5949      if (!GetPamTree()) {
5950        cout << " TChain* PamLevel2::AddFriend(TString cname) --- a pamela tree must be created first" << endl;
5951        return NULL;
5952      }
5953    
5954      TChain *c = new TChain(cname.Data());
5955    
5956      TIter next(GetPamTree()->GetListOfFiles());
5957      Int_t nf = 0;
5958      TChainElement* element = 0;
5959      while ((element = (TChainElement*) next())) {
5960        c->Add(element->GetTitle());
5961        nf++;
5962      }
5963    
5964      GetPamTree()->AddFriend(cname.Data());
5965    
5966      cout << "external chain created and added to pamela friends :" << cname << endl;
5967      cout << "n.files " << nf << endl;
5968    
5969      return c;
5970    
5971    }
5972    
5973    /**
5974     * Returns the current read entry. This method simply returns the result of the call to
5975     * pam_tree->GetReadEntry(), so it is entirely handled by ROOT.
5976     */
5977    Long64_t PamLevel2::GetReadEntry() {
5978      return pam_tree->GetReadEntry();
5979    }
5980    
5981    /**
5982     * Sets the sorting method. If the new method is different from the previous, the issorted
5983     * flag is set to false, forcing a new sort the next time GetTrack is called.
5984     * @see GetTrack
5985     */
5986    void PamLevel2::SetSortingMethod(TString how) {
5987      if (howtosort != how) {
5988        issorted = false;
5989        issorted_new = false;
5990      }
5991      howtosort = how;
5992    }

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