PamVMC_update/examples/run_jobs.sh

#! /bin/bash

CAT="/bin/cat"
SED="/bin/sed"
RM="/bin/rm"
QSUB="/sge-root/bin/lx24-x86/qsub"
SEQ="/usr/bin/seq"

PIN_DIR="${PWD}/pin"
POUT_DIR="${PWD}/pout"
PERR_DIR="${PWD}/perr"

SETPAMENV="/opt/vmc.sh"
WORKDIR="${PWD}"
INPUT_KINEMATICS="/home/nikonov/HE_SIM/points_logbins40/*"
RUN_G4_SIM="${PWD}/run_sim_g4.C"

script="${PWD}/run_single_job.sh"

configmacro="g4Config.C"
 
for i in ${INPUT_KINEMATICS}
  do
    prefix1="${i##/*/}"
    prefix="${prefix1%.*}"
    echo $prefix
    echo $i
    pin="${prefix}.in.txt"
    pin="${PIN_DIR}/${pin}"
    if [ -e $pin ]; then
        $RM -f $pin
    fi
    pout="${prefix}.out.txt"
    pout="${POUT_DIR}/${pout}"
    if [ -e $pout ]; then
        $RM -f $pout
    fi
    perr="${prefix}.err.txt"
    perr="${PERR_DIR}/${perr}"
    if [ -e $perr ]; then
        $RM -f $perr
    fi
    
    echo $SETPAMENV >> $pin
    echo $RUN_G4_SIM >> $pin
    echo $configmacro >> $pin
    echo $i >> $pin

    $QSUB -wd $WORKDIR -e $perr -i $pin -o $pout $script
done
exit 0
1	#! /bin/bash
2
3	CAT="/bin/cat"
4	SED="/bin/sed"
5	RM="/bin/rm"
6	QSUB="/sge-root/bin/lx24-x86/qsub"
7	SEQ="/usr/bin/seq"
8
9	PIN_DIR="${PWD}/pin"
10	POUT_DIR="${PWD}/pout"
11	PERR_DIR="${PWD}/perr"
12
13	SETPAMENV="/opt/vmc.sh"
14	WORKDIR="${PWD}"
15	INPUT_KINEMATICS="/home/nikonov/HE_SIM/points_logbins40/*"
16	RUN_G4_SIM="${PWD}/run_sim_g4.C"
17
18	script="${PWD}/run_single_job.sh"
19
20	configmacro="g4Config.C"
21
22	for i in ${INPUT_KINEMATICS}
23	do
24	prefix1="${i##/*/}"
25	prefix="${prefix1%.*}"
26	echo $prefix
27	echo $i
28	pin="${prefix}.in.txt"
29	pin="${PIN_DIR}/${pin}"
30	if [ -e $pin ]; then
31	$RM -f $pin
32	fi
33	pout="${prefix}.out.txt"
34	pout="${POUT_DIR}/${pout}"
35	if [ -e $pout ]; then
36	$RM -f $pout
37	fi
38	perr="${prefix}.err.txt"
39	perr="${PERR_DIR}/${perr}"
40	if [ -e $perr ]; then
41	$RM -f $perr
42	fi
43
44	echo $SETPAMENV >> $pin
45	echo $RUN_G4_SIM >> $pin
46	echo $configmacro >> $pin
47	echo $i >> $pin
48
49	$QSUB -wd $WORKDIR -e $perr -i $pin -o $pout $script
50	done
51	exit 0