/[PAMELA software]/PamVMC/HOWTO_VMC_and_PAMELA

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-revision 1.1 by pam-rm2,
Fri Jun 12 18:56:07 2009 UTC
+revision 1.3 by formato,
Thu Feb 27 08:24:41 2014 UTC
 Line 1
+ Last update: V. Formato
  @ PREAMBLE
    This text will help you in installation of PamVMC simulator. This document will be
    updated after next release of tools.
-   Installation was done on Debian machine, kernel 2.6.26-2-686,
+   Installation was done on a SL5 machine, kernel 2.6.18-348.18.1.el5,
-   gcc version 3.4.6 (Debian 3.4.6-5)
+   gcc version 4.7.0
-   Everything was compiled under ROOT v. 5.23. PAMELA software (8th reduction) was corrected
+   Everything was compiled under ROOT v. 5.34. PAMELA software (9th reduction) was corrected
-   to be compiled (see list of changes below). PAMELA libraries was compiled, but  executables,
+   to be compiled (see list of changes below). PAMELA libraries were compiled, but  executables,
-   like chewbacca still doesn't work (need to be corrected). Anyway, PamVMC needs only libraries
+   like chewbacca still doesn't work (need to be corrected). Anyway, PamVMC needs only the libraries
-   for getting information about real magnetic field. To proceess data, I prefer now to have
+   to get information about the magnetic field. To proceess data, you should have
-   also standard (second) PAMELA SW installaton under previous version of ROOT (5.20). @
+   a standard PAMELA SW installaton under previous version of ROOT (5.26). @
-   This is a list of tools to do simulation:
+   This is a list of tools for the installation:
-   CLHEP 2.0.4.2
+   GEANT 4.9.6.p01
-   GEANT 4.9.2.p01
+   ROOT v. 5.34
-   ROOT v. 5.23.04
+   VGM v.3.06
-   VGM v.3.02
+   xerces-c-3.1.1
-   PAMELA 8th reduction (should be corrected by yourself if any problems)
+   PAMELA 9th reduction software (should be corrected by yourself if any problems)
    In /scripts directory you will find examples of scripts that does an export of
    ALL enviroment variables for this installation. Please check them with yours.
-) @installed packages mesa-libGLU mesa-libGLU-devel gcc-g77 libXi libXi-devel@
+) @install GEANT 4.9.6.p01@  (also includes CHLEP)
-) @set gcc and g++ and f77 @
+    mkdir cern
-) @install CLHEP 2.0.4.2@
-    mkdir /cern
     cd /cern
-    wget <source>
+    tar -xvf geant4.9.6.p01.tar.gz
-    tar zxf clhep-2.0.4.2.tgz
+    mkdir geant4.9.6.p01-build
-    ln -s /cern/2.0.4.2 CLHEP
+    mkdir geant4.9.6.p01-install
-    cd CLHEP
+    ln -s geant4.9.6.p01-install G4
-    ./configure --prefix=/cern/CLHEP
+    cd geant4.9.6.p01-build
-    make
+    export CFLAGS=-m32
-    make test
+    export CXXFLAGS=-m32
+    cmake -DCMAKE_INSTALL_PREFIX=$PWD/../geant4.9.6.p01-install/ -DGEANT4_INSTALL_DATA=ON ../geant4.9.6.p01
+    ccmake ../geant4.9.6.p01
+          @@@ Enable the following flags:
+              - GEANT4_USE_G3TOG4
+              - GEANT4_USE_GDML
+              - GEANT4_USE_OPENGL_X11
+              - GEANT4_USE_SYSTEM_EXPAT
+    make -j4
     make install
-) @install GEANT 4.9.2.p01@
+    cd geant4.9.6.p01-install
-    cd /cern
+    ln -s bin/geant4.sh env.sh
-    mkdir G4
+    cd ..
-    cd G4
+a)@source the geant4 environmental variables!
-    mkdir data
+    source G4/env.sh
-    @copy all cross-section data files in /cern/G4/data and untar them@
-    cd /cern
+) @ installation of ROOT v. 5.34 @
-    @copy geant4 sorce tar file in /cern and untar@
+    @ put root_v5.34.04.source.tar.gz in /cern @
-    cd /cern/geant4.9.2.p01
-    ./Configure -build
-    @ Would you like to see the instructions? [n] @
-    @ [Press [Enter] for default settings] @
-    @ Do you expect to run these scripts and binaries on multiple machines? [n] @
-    @ Where is Geant4 source installed?  [/cern/geant4.9.2.p01]  @
-    @ Specify the path where Geant4 libraries and source files should be installed. [/cern/G4] @
-    @ Do you want to copy all Geant4 headers in one directory? [y] @
-    @ Specify the path where are the Geant4 data libraries
-     PhotonEvaporation2.0 RadioactiveDecay3.2 G4EMLOW6.2 G4NDL3.13 G4ABLA3.0
-     are installed. For now, a flat directory structure is assumed, and this can
-     be customized at the next step if needed. [/cern/G4/data] @
-   @ Please, specify where CLHEP is installed. [/cern/CLHEP]  @
-   @ You can customize paths and library name of you CLHEP installation:
-) CLHEP_INCLUDE_DIR:               /cern/CLHEP/include
-) CLHEP_LIB_DIR:           /cern/CLHEP/lib
-) CLHEP_LIB:                       CLHEP
-     To modify default settings, select number above (e.g. 2)
-     [Press [Enter] for default settings] @
-   @ By default 'static' (.a) libraries are built.
-     Do you want to build 'shared' (.so) libraries? [y] @
-   @ You selected to build 'shared' (.so) libraries.
-     Do you want to build 'static' (.a) libraries too? [n] @
-   @ Do you want to build 'global' compound libraries? [n] @
-   @ Do you want to compile libraries in DEBUG mode (-g)? [n] @
-   @ G4UI_NONE
-     If this variable is set, no UI sessions nor any UI libraries are built.
-     This can be useful when running a pure batch job or in a user framework
-     having its own UI system.
-     Do you want to set this variable ? [n]  @
-   @ G4UI_BUILD_XAW_SESSION
-     G4UI_USE_XAW
-     Specifies to include and use the XAW interfaces in the
-     application to be built.
-     The XAW (X11 Athena Widget set) extensions are required to activate
-     and build this driver. [n] @
-   @ G4UI_BUILD_XM_SESSION
-     G4UI_USE_XM
-     Specifies to include and use the XM Motif based user interfaces.
-     The XM Motif extensions are required to activate and build this
-     driver. [n] @
-   @ G4UI_BUILD_QT_SESSION
-     G4UI_USE_QT
-     Setting these variables will enable the building of the G4 Qt based
-     user interface module and the use of this module in your applications
-     respectively.
-     The Qt3 or Qt4 headers, libraries and moc application are required to enable
-     the building of this module.
-     Do you want to enable build and use of this module? [n] @
-   @ G4VIS_NONE
-     If this variable is set, no visualization drivers will be built or used.
-     Do you want to set this variable ? [n] @
-   @ G4VIS_BUILD_OPENGLX_DRIVER
-     G4VIS_USE_OPENGLX
-     It is an interface to the de facto standard 3D graphics library,
-     OpenGL. It is well suited for real-time fast visualization
-     and prototyping. The X11 version of the OpenGL libraries is required. [y] @
-   @ G4VIS_BUILD_OPENGLXM_DRIVER
-     G4VIS_USE_OPENGLXM
-     It is an interface to the de facto standard 3D graphics library,
-     OpenGL. It is well suited for real-time fast visualization
-     and prototyping. The X11 version of the OpenGL libraries and
-     the Motif Xm extension is required. [n] @
-   @ G4VIS_BUILD_DAWN_DRIVER
-     G4VIS_USE_DAWN
-     DAWN drivers are interfaces to the Fukui Renderer DAWN. DAWN is
-     a vectorized 3D PostScript processor suited to prepare technical
-     high quality outputs for presentation and/or documentation. [n] @
-   @ G4VIS_BUILD_OIX_DRIVER
-     G4VIS_USE_OIX
-     The OpenInventor driver is based on OpenInventor technology
-     for scientific visualization.
-     The X11 version of OpenInventor is required. [n] @
-   @ G4VIS_BUILD_RAYTRACERX_DRIVER
-     G4VIS_USE_RAYTRACERX
-     Allows for interactive ray-tracing graphics through X11.
-     The X11 package is required. [n] @
-   @ G4VIS_BUILD_VRML_DRIVER
-     G4VIS_USE_VRML
-     These driver generate VRML files, which describe 3D scenes to be
-     visualized with a proper VRML viewer. [n] @
-   @ OGLHOME/include
-     OGLHOME/lib
-     You have selected to use OpenGL driver.
-     Specify the correct path (OGLHOME) where OpenGL is installed in your system.
-     It was found in /usr. Press [Enter] to set this path or type the correct one.
-     You can set '-' (without quotation) to CANCEL the OpenGL flag at all: [/usr]
-     "here you need to specify path to your OpenGL headers and libraries.
-      Please note, that you have to install development version of OpenGL to have headers" @
-   @ G4UI_BUILD_OPENGLQT_DRIVER
-     G4UI_USE_OPENGLQT
-     Setting these variables will enable the building of the G4 OpenGL Qt based
-     visualisation driver and the use of this driver in your applications
-     respectively.
-     The Qt3 or Qt4 headers, libraries and moc application are required to enable
-     the building of this module.
-     Do you want to enable build and use of this module? [n] @
-   @ G4LIB_BUILD_GDML
-     Setting this variable will enable building of the GDML plugin module embedded
-     in Geant4 for detector description persistency.
-     It requires your system to have the XercesC library and headers installed.
-     Do you want to set this variable? [n] @
-   @ G4LIB_BUILD_G3TOG4
-     The utility module 'g3tog4' will be built by setting this
-     variable. NOTE: it requires a valid FORTRAN compiler to be
-     installed on your system and the 'cernlib' command in the
-     path, in order to build the ancillary tools!
-     Do you want to build 'g3tog4' ? [y] @
-   @ G4LIB_BUILD_ZLIB
-     Do you want to activate compression for output files
-     generated by the HepRep visualization driver? [y] @
-   @ G4ANALYSIS_USE
-     Activates the configuration setup for allowing plugins to
-     analysis tools based on AIDA (Astract Interfaces for Data
-     Analysis). In order to use AIDA features and compliant analysis
-     tools, the proper environment for these tools will have to be
-     set (see documentation for the specific analysis tools). [n] @
-   @ end of configuration phase.
-     Creating configuration setup file...
-     WARNING: the generated configuration file
-     can be edited if necessary!
-     You can introduce any change to the configuration file
-     /cern/geant4.9.2.p01/.config/bin/Linux-g++/config.sh before the final installation.
-     To do so, use a shell escape now (e.g. !vi /cern/geant4.9.2.p01/.config/bin/Linux-g++/config.sh).
-     Press [Enter] to start installation or use a shell escape to edit config.sh: @
-  @ Finally,@
-     ./Configure - install
-  @script to setup enviroment: /cern//geant4.9.2.p01/.config/bin/Linux-g++/env.sh @
-) @ install PYTHIA6 @
-    @ get archive ftp://root.cern.ch/root/pythia6.tar.gz and put it in /cern @
-    tar zxf pythia6.tar.gz
-    cd pythia6
-    makePythia6.linux
-) @ installation of ROOT v. 5.23.04 @
-    @ put root_v5.23.04.source.tar.gz in /cern @
     cd /cern
-    tar zxf root_v5.23.04.source.tar.gz
+    tar -zxvf root_v5.34.04.source.tar.gz
-    mv root root_v5.23.04
+    mv root root_v5.34
-    ln -s root_v5.23.04 ROOT
+    ln -s root_v5.34 root
-    cd ROOT/lib
+    source G4/env.sh
-    ln -s /cern/pythia6/libPythia6.so libPythia6.so
+    export ROOTSYS=$PWD/root
-    cd /cern/ROOT
+    ./configure linux --all --enable-builtin-pcre --disable-castor
-    source /cern//geant4.9.2.p01/.config/bin/Linux-g++/env.sh
-    export ROOTSYS=/cern/ROOT
-    ./configure linux --disable-afs --enable-cern --enable-mysql --disable-cintex
-                      --disable-globus --enable-roofit --enable-g4root
-                      --with-g4-incdir=$G4INCLUDE --with-g4-libdir=$G4LIB/Linux-g++
-                      --with-clhep-incdir=$CLHEP_BASE_DIR/include
-                      --with-f77=g77 --enable-pythia6  --with-pythia6-libdir=/cern/pythia6
      make
-) @installation of VGM v.3.02@
+) @installation of xerces v.3.1.1@
+    tar -xvf xerces-c-3.1.1.tar.gz
+    ./configure --build=i686 --prefix $PWD
+    make
+    make install
+) @installation of VGM v.3.06@
     @Note: VGM is needed to convert ROOT-defined geomery in GEANT4. So, you need
      install VGM only if you plan to use in RunConfiguration of your application
      an option "geomRootToGeant4" - geometry defined in Root, but GEANT4 navigation.
-Line 204
+Line 74
      @ get archive from http://ivana.home.cern.ch/ivana/VGM.html and put in in /cern @
      cd /cern
-     tar zxf v3-02.tar.gz
+     tar zxf v3-06.tar.gz
-     ln -s /cern/v3-02 /cern/VGM
+     mkdir vgm.3.06-build
+     mkdir vgm.3.06-install
+     ln -s vgm.3.06-install VGM
      emacs -nw VGM/config/geant4.gmk
      @ correct line 23: CPPFLAGS += -I$(G4INCLUDE) on some machines @
-     cd /VGM/packages
+     cd VGM
+     ./autoconf/configure --with-clhep-include=$PWD/../geant4.9.6.p01-install/include/Geant4/ --with-clhep-libdir=$PWD/../geant4.9.6.p01-install/lib/ --with-geant4=/$PWD/../geant4.9.6.p01-install/ --with-xerces=$PWD/../xerces-c-3.1.1/ --with-root=$PWD/../root/
      make
-     @ after you should fin in /cern/VGM/lib/Linux-g++ libaries:
-      libBaseVGM.so  libClhepVGM.so  libGeant4GM.so  libRootGM.so  libXmlVGM.so @
 ) Installation of PAMELA software
-    @ create a symbolic link to cint includes: (needed for Darth Vader with ROOT 5.23)
+    @ Follow the standard instructions for the installation of PAMELA software and source the enviroment @
-      for ROOT 5.20 you don't need to do it@
-      cd /cern/ROOT/include
-      ln -s ../cint/cint/inc/ cint
 ) Installation of geant4_vmc
-   @  get source ftp://root.cern.ch/root/vmc/geant4_vmc.2.6.tar.gz and put in /cern @
+   @get source ftp://root.cern.ch/root/vmc/geant4_vmc.2.14a.tar.gz and put in /cern @
-      cd /cern
+    cd /cern
-      tar zxf geant4_vmc.2.6.tar.gz
+    tar -zxvf geant4_vmc.2.14a.tar.gz
-      ln -s /cern/geant4_vmc_2.6 /cern/geant4_vmc
+    cd geant4_vmc
-      cd /geant4_vmc/source
+    @edit `root-config --etcdir`/vmc/Makefile.linux and add the -m32 flag to the OPT variable and empty the variable SHLIB@
-      make
+    make
 ) Installation of PamVMC
-   @Before you start, do an export of PAM_VMC env.  variable to source directory
+   @Before you start, do an export of PAM_VMC env.  variable to the source directory
    In case if you wish to use PamVMC with GEANT4 you should go to $(PAM_VMC)/PamG4RunConfiguration @
    make clean
    make
-Line 241
+Line 109
    make
    @ after this step an application library $(PAM_VMC)/lib/tgt_$(PLATFORM)/libPamVMC_fc.so will be compiled
      and some calibration files will be copied from $(PAM_VMC)/aux@
+   @ do an export
+   export LD_LIBRARY_PATH=$(PAM_VMC)/lib/tgt_$(PLATFORM):$(LD_LIBRARY_PATH)
    @ in $(PAM_VMC)/examples you can find an example of usage @
    @ For more details please look inside $(PAM_VMC)/include PamVMCPrimaryGenerator.h and PamVMCDetectorHit.h @
+ @From here on old instructions:
+ /////////////EXTERNAL DIGITIZER/////////////////
+ In aux/PamVMVDigitizer you can find a source code of stand-alone digitizer. Just do make.
+ There are only 3 parameters: input root-file name, output raw-filename and integer random seed.
+ If you specify 0, then TRandom3(0) object will be created. All digitizers use this object.
+ Please note, that current version of digidaizer could be not compatible with root-files generated
+ with previous versions of PamVMC due to addtitonal variables in PamVMCDetectorHit class
  /////////////SPGECTRA GENERATOR/////////////////
  @ spectra_generator is a tool which allow you to generate tracks above the apparatus
    isotropically and save initial kinematic parameters (X0,Y0,Z0=110., P, Theta, Phi)

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