TrackerLevel2/src/TrkLevel2.cpp

/**
 * \file TrkLevel2.cpp
 * \author Elena Vannuccini
 */
#include <TrkLevel2.h>
#include <iostream>
using namespace std;
//......................................
// F77 routines
//......................................
extern "C" {    
    void dotrack_(int*, double*, double*, double*, double*, int*);
    void dotrack2_(int*, double*, double*, double*, double*,double*, double*, double*,int*);
    int  readb_(const char*); 
}
//--------------------------------------
//
//
//--------------------------------------
TrkTrack::TrkTrack(){
    seqno = -1; 
    image = -1; 
    chi2  = 0;
    for(int it1=0;it1<5;it1++){
                al[it1] = 0;
                for(int it2=0;it2<5;it2++)coval[it1][it2] = 0;
    };
    for(int ip=0;ip<6;ip++){
                xgood[ip]  = 0;
                ygood[ip]  = 0;
                xm[ip]     = 0;
                ym[ip]     = 0;
                zm[ip]     = 0;
                resx[ip]   = 0;
                resy[ip]   = 0;
                xv[ip]     = 0;
                yv[ip]     = 0;
                zv[ip]     = 0;
                axv[ip]    = 0;
                ayv[ip]    = 0;
                dedx_x[ip] = 0;
                dedx_y[ip] = 0;
//              clx[ip]    = 0;
//              cly[ip]    = 0;
        };
        clx = new TRefArray(6,0);
        cly = new TRefArray(6,0);
};
//--------------------------------------
//
//
//--------------------------------------
TrkTrack::TrkTrack(const TrkTrack& t){
    seqno = t.seqno; 
    image = t.image; 
    chi2  = t.chi2;
    for(int it1=0;it1<5;it1++){
                al[it1] = t.al[it1];
                for(int it2=0;it2<5;it2++)coval[it1][it2] = t.coval[it1][it2];
    };
    for(int ip=0;ip<6;ip++){
                xgood[ip]  = t.xgood[ip];
                ygood[ip]  = t.ygood[ip];
                xm[ip]     = t.xm[ip];
                ym[ip]     = t.ym[ip];
                zm[ip]     = t.zm[ip];
                resx[ip]   = t.resx[ip];
                resy[ip]   = t.resy[ip];
                xv[ip]     = t.xv[ip];
                yv[ip]     = t.yv[ip];
                zv[ip]     = t.zv[ip];
                axv[ip]    = t.axv[ip];
                ayv[ip]    = t.ayv[ip];
                dedx_x[ip] = t.dedx_x[ip];
                dedx_y[ip] = t.dedx_y[ip];
        //      clx[ip]    = 0;//<<<<pointer
        //      cly[ip]    = 0;//<<<<pointer
        };
        clx = new TRefArray(*(t.clx));
        cly = new TRefArray(*(t.cly));
        
};
//--------------------------------------
//
//
//--------------------------------------
/**
 * Evaluates the trajectory in the apparatus associated to the track. 
 * It integrates the equations of motion in the magnetic field. The magnetic field should be previously loaded ( by calling  TrkLevel2::LoadField() ), otherwise an error message is returned.  
 * @param t pointer to an object of the class Trajectory, 
 * which z coordinates should be previously initialized by calling the proper constructor ( Trajectory::Trajectory(int n, float* zin) ).
 * @return error flag.
 */
int TrkTrack::DoTrack(Trajectory* t){

    double *dxout = new double[t->npoint];
    double *dyout = new double[t->npoint];
    double *dzin = new double[t->npoint];
    double dal[5];

    int ifail = 0;

    for (int i=0; i<5; i++)         dal[i]  = (double)al[i];
    for (int i=0; i<t->npoint; i++) dzin[i] = (double)t->z[i];

    dotrack_(&(t->npoint),dzin,dxout,dyout,dal,&ifail);
    
    for (int i=0; i<t->npoint; i++){
        t->x[i] = (float)*dxout++;
        t->y[i] = (float)*dyout++;
    }

//    delete [] dxout;
//    delete [] dyout;
//    delete [] dzin;

    return ifail;
};
//--------------------------------------
//
//
//--------------------------------------
/**
 * Evaluates the trajectory in the apparatus associated to the track. 
 * It integrates the equations of motion in the magnetic field. The magnetic field should be previously loaded ( by calling  TrkLevel2::LoadField() ), otherwise an error message is returned.  
 * @param t pointer to an object of the class Trajectory, 
 * which z coordinates should be previously initialized by calling the proper constructor ( Trajectory::Trajectory(int n, float* zin) ).
 * @return error flag.
 */
int TrkTrack::DoTrack2(Trajectory* t){

    double *dxout   = new double[t->npoint];
    double *dyout   = new double[t->npoint];
    double *dthxout = new double[t->npoint];
    double *dthyout = new double[t->npoint];
    double *dtlout  = new double[t->npoint];
    double *dzin    = new double[t->npoint];
    double dal[5];

    int ifail = 0;

    for (int i=0; i<5; i++)         dal[i]  = (double)al[i];
    for (int i=0; i<t->npoint; i++) dzin[i] = (double)t->z[i];

    dotrack2_(&(t->npoint),dzin,dxout,dyout,dthxout,dthyout,dtlout,dal,&ifail);
    
    for (int i=0; i<t->npoint; i++){
        t->x[i]   = (float)*dxout++;
        t->y[i]   = (float)*dyout++;
        t->thx[i] = (float)*dthxout++;
        t->thy[i] = (float)*dthyout++;
        t->tl[i]  = (float)*dtlout++;
    }

//    delete [] dxout;
//    delete [] dyout;
//    delete [] dzin;

    return ifail;
};
//--------------------------------------
//
//
//--------------------------------------
//float TrkTrack::BdL(){
//};
//--------------------------------------
//
//
//--------------------------------------
Float_t TrkTrack::GetRigidity(){ 
        Float_t rig=0;
        if(chi2>0)rig=1./al[4];
        if(rig<0) rig=-rig;
        return rig;
};
//
Float_t TrkTrack::GetDeflection(){
        Float_t def=0;
        if(chi2>0)def=al[4];
        return def;
};
//
Float_t TrkTrack::GetDEDX(){
        Float_t dedx=0; 
        for(Int_t i=0; i<6; i++)dedx+=dedx_x[i]*xgood[i]+dedx_y[i]*ygood[i]; 
        dedx = dedx/(this->GetNX()+this->GetNY());
        return dedx;
};

//--------------------------------------
//
//
//--------------------------------------
void TrkTrack::Dump(){
    cout << endl << "========== Track " ;
    cout << endl << "al       : "; for(int i=0; i<5; i++)cout << al[i] << " ";
    cout << endl << "chi^2    : "<< chi2;
    cout << endl << "xgood    : "; for(int i=0; i<6; i++)cout << xgood[i] ;
    cout << endl << "ygood    : "; for(int i=0; i<6; i++)cout << ygood[i] ;
    cout << endl << "xm       : "; for(int i=0; i<6; i++)cout << xm[i] << " ";
    cout << endl << "ym       : "; for(int i=0; i<6; i++)cout << ym[i] << " ";
    cout << endl << "zm       : "; for(int i=0; i<6; i++)cout << zm[i] << " ";
    cout << endl << "dedx_x   : "; for(int i=0; i<6; i++)cout << dedx_x[i] << " ";
    cout << endl << "dedx_y   : "; for(int i=0; i<6; i++)cout << dedx_y[i] << " ";
}
//--------------------------------------
//
//
//--------------------------------------
TrkSinglet::TrkSinglet(){
    plane    = 0;
    coord[0] = 0; 
    coord[1] = 0;
    sgnl     = 0;
        cls      = 0;
};
//--------------------------------------
//
//
//--------------------------------------
TrkSinglet::TrkSinglet(const TrkSinglet& s){
    plane    = s.plane;
    coord[0] = s.coord[0]; 
    coord[1] = s.coord[1];
    sgnl     = s.sgnl;
//      cls      = 0;//<<<<pointer
        cls      = TRef(s.cls);
};
//--------------------------------------
//
//
//--------------------------------------
void TrkSinglet::Dump(){
    int i=0;
    cout << endl << "========== Singlet " ;
    cout << endl << "plane    : " << plane;
    cout << endl << "coord[2] : "; while( i<2 && cout << coord[i] << " ") i++;
    cout << endl << "sgnl     : " << sgnl;
}
//--------------------------------------
//
//
//--------------------------------------
TrkLevel2::TrkLevel2(){
    good2    = -1;
    for(Int_t i=0; i<12 ; i++){
        crc[i] = -1;
    };
    Track    = new TClonesArray("TrkTrack");
    SingletX = new TClonesArray("TrkSinglet");
    SingletY = new TClonesArray("TrkSinglet");

//      PhysicalTrack = new TClonesArray("TrkTrack");
        //sostituire con TRefArray... appena ho capito come si usa
}
//--------------------------------------
//
//
//--------------------------------------
void TrkLevel2::Dump(){
    TClonesArray &t  = *Track;
    TClonesArray &sx = *SingletX;
    TClonesArray &sy = *SingletY;

    cout << endl << endl << "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-";
    cout << endl << "good2    : " << good2;
    cout << endl << "crc      : "; for(int i=0; i<12; i++) cout << crc[i];
    cout << endl << "ntrk()   : " << this->ntrk() ;
    cout << endl << "nclsx()  : " << this->nclsx();
    cout << endl << "nclsy()  : " << this->nclsy();
    for(int i=0; i<this->ntrk(); i++)     ((TrkTrack *)t[i])->Dump();
    for(int i=0; i<this->nclsx(); i++) ((TrkSinglet *)sx[i])->Dump();
    for(int i=0; i<this->nclsy(); i++) ((TrkSinglet *)sy[i])->Dump();
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Fills a TrkLevel2 object with values from a struct cTrkLevel2 (to get data from F77 common).
 */
void TrkLevel2::SetFromLevel2Struct(cTrkLevel2 *l2){
    //
//    Track    = new TClonesArray("TrkTrack");
//    SingletX = new TClonesArray("TrkSinglet");
//    SingletY = new TClonesArray("TrkSinglet");
//  temporary objects:
    TrkSinglet* t_singlet = new TrkSinglet();
    TrkTrack*   t_track   = new TrkTrack();
//  general variables
    good2 = l2->good2;
    for(Int_t i=0; i<12 ; i++){
        crc[i] = l2->crc[i];
    };
//  *** TRACKS ***
    TClonesArray &t = *Track;
    for(int i=0; i<l2->ntrk; i++){
                t_track->seqno = i;// NBNBNBNB deve sempre essere = i
                t_track->image = l2->image[i]-1;
        //      cout << "track "<<i<<t_track->seqno << t_track->image<<endl;
                t_track->chi2  = l2->chi2_nt[i];
                for(int it1=0;it1<5;it1++){
                        t_track->al[it1] = l2->al_nt[i][it1];
                        for(int it2=0;it2<5;it2++)
                        t_track->coval[it1][it2] = l2->coval[i][it2][it1];
                };
                for(int ip=0;ip<6;ip++){
                        t_track->xgood[ip]  = l2->xgood_nt[i][ip];
                        t_track->ygood[ip]  = l2->ygood_nt[i][ip];
                        t_track->xm[ip]     = l2->xm_nt[i][ip];
                        t_track->ym[ip]     = l2->ym_nt[i][ip];
                        t_track->zm[ip]     = l2->zm_nt[i][ip];
                        t_track->resx[ip]   = l2->resx_nt[i][ip];
                        t_track->resy[ip]   = l2->resy_nt[i][ip];
                        t_track->xv[ip]     = l2->xv_nt[i][ip];
                        t_track->yv[ip]     = l2->yv_nt[i][ip];
                        t_track->zv[ip]     = l2->zv_nt[i][ip];
                        t_track->axv[ip]    = l2->axv_nt[i][ip];
                        t_track->ayv[ip]    = l2->ayv_nt[i][ip];
                        t_track->dedx_x[ip] = l2->dedx_x[i][ip];
                        t_track->dedx_y[ip] = l2->dedx_y[i][ip];
//                      t_track->clx[ip] = 0;
//                      t_track->cly[ip] = 0;
                };
                new(t[i]) TrkTrack(*t_track);
                t_track->Clear();
    };
//  *** SINGLETS ***
    TClonesArray &sx = *SingletX;
    for(int i=0; i<l2->nclsx; i++){
                t_singlet->plane    = l2->planex[i];
                t_singlet->coord[0] = l2->xs[i][0];
                t_singlet->coord[1] = l2->xs[i][1];
                t_singlet->sgnl     = l2->signlxs[i];
//              t_singlet->cls      = 0;
                new(sx[i]) TrkSinglet(*t_singlet);
                t_singlet->Clear();
    }
    TClonesArray &sy = *SingletY;
    for(int i=0; i<l2->nclsy; i++){
                t_singlet->plane    = l2->planey[i];
                t_singlet->coord[0] = l2->ys[i][0];
                t_singlet->coord[1] = l2->ys[i][1];
                t_singlet->sgnl     = l2->signlys[i];
//              t_singlet->cls      = 0;
                new(sy[i]) TrkSinglet(*t_singlet);
                t_singlet->Clear();
        };
        
        delete t_track;
        delete t_singlet;
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Fills a TrkLevel2 object with values from a struct cTrkLevel2 (to get data from F77 common). 
 * Ref to Level1 data (clusters) is also set.
 */
void TrkLevel2::SetFromLevel2Struct(cTrkLevel2 *l2, TrkLevel1 *l1){

//  temporary objects:
        TrkSinglet* t_singlet = new TrkSinglet();
        TrkTrack*   t_track   = new TrkTrack();
// general variables
        good2 = l2->good2;
        for(Int_t i=0; i<12 ; i++){
                crc[i] = l2->crc[i];
        };
// *** TRACKS ***
        TClonesArray &t = *Track;
        for(int i=0; i<l2->ntrk; i++){
                t_track->seqno = i;// NBNBNBNB deve sempre essere = i
                t_track->image = l2->image[i]-1;
//              cout << "track "<<i<<t_track->seqno << t_track->image<<endl;
                t_track->chi2  = l2->chi2_nt[i];
                for(int it1=0;it1<5;it1++){
                        t_track->al[it1] = l2->al_nt[i][it1];
                        for(int it2=0;it2<5;it2++)
                                t_track->coval[it1][it2] = l2->coval[i][it2][it1];
                };
                for(int ip=0;ip<6;ip++){
                        t_track->xgood[ip]  = l2->xgood_nt[i][ip];
                        t_track->ygood[ip]  = l2->ygood_nt[i][ip];
                        t_track->xm[ip]     = l2->xm_nt[i][ip];
                        t_track->ym[ip]     = l2->ym_nt[i][ip];
                        t_track->zm[ip]     = l2->zm_nt[i][ip];
                        t_track->resx[ip]   = l2->resx_nt[i][ip];
                        t_track->resy[ip]   = l2->resy_nt[i][ip];
                        t_track->xv[ip]     = l2->xv_nt[i][ip];
                        t_track->yv[ip]     = l2->yv_nt[i][ip];
                        t_track->zv[ip]     = l2->zv_nt[i][ip];
                        t_track->axv[ip]    = l2->axv_nt[i][ip];
                        t_track->ayv[ip]    = l2->ayv_nt[i][ip];
                        t_track->dedx_x[ip] = l2->dedx_x[i][ip];
                        t_track->dedx_y[ip] = l2->dedx_y[i][ip];
//                      cout << "traccia "<<i<<"  --  "<< ip << " "<< l2->cltrx[i][ip] <<" "<< l2->cltry[i][ip] <<" "<< t_track->xgood[ip] << t_track->ygood[ip]<<endl;
                        //-----------------------------------------------------
//                      t_track->clx[ip] = l1->GetCluster(l2->cltrx[i][ip]-1);
//                      t_track->cly[ip] = l1->GetCluster(l2->cltry[i][ip]-1);
                        if(t_track->xgood[ip])t_track->clx->AddAt(l1->GetCluster(l2->cltrx[i][ip]-1),ip);
                        if(t_track->ygood[ip])t_track->cly->AddAt(l1->GetCluster(l2->cltry[i][ip]-1),ip);
                        //-----------------------------------------------------
                };
                new(t[i]) TrkTrack(*t_track);
                t_track->Clear();
        };
// *** SINGLETS ***
        TClonesArray &sx = *SingletX;
        for(int i=0; i<l2->nclsx; i++){
                t_singlet->plane    = l2->planex[i];
                t_singlet->coord[0] = l2->xs[i][0];
                t_singlet->coord[1] = l2->xs[i][1];
                t_singlet->sgnl     = l2->signlxs[i];
                //-----------------------------------------------------
//              cout << "singolo x "<<i<<"  --  "<<  l2->clsx[i] <<endl;
                t_singlet->cls      = l1->GetCluster(l2->clsx[i]-1);
                //-----------------------------------------------------
                new(sx[i]) TrkSinglet(*t_singlet);
                t_singlet->Clear();
        }
        TClonesArray &sy = *SingletY;
        for(int i=0; i<l2->nclsy; i++){
                t_singlet->plane    = l2->planey[i];
                t_singlet->coord[0] = l2->ys[i][0];
                t_singlet->coord[1] = l2->ys[i][1];
                t_singlet->sgnl     = l2->signlys[i];
                //-----------------------------------------------------
//              cout << "singolo y "<<i<<"  --  "<<  l2->clsy[i] <<endl;
                t_singlet->cls      = l1->GetCluster(l2->clsy[i]-1);
                //-----------------------------------------------------
                new(sy[i]) TrkSinglet(*t_singlet);
                t_singlet->Clear();
        };
        
        delete t_track;
        delete t_singlet;
}
/**
 * Fills a struct cTrkLevel2 with values from a TrkLevel2 object (to put data into a F77 common).
 */

void TrkLevel2::GetLevel2Struct(cTrkLevel2 *l2) const {
  
//  general variables
    l2->good2 = good2 ;
    for(Int_t i=0; i<12 ; i++){
        l2->crc[i] = crc[i];
    };
//  *** TRACKS ***

    l2->ntrk              =  Track->GetEntries();    
    for(Int_t i=0;i<l2->ntrk;i++){
      l2->image[i] = 1 + ((TrkTrack *)Track->At(i))->image;
      l2->chi2_nt[i] =  ((TrkTrack *)Track->At(i))->chi2;
      for(int it1=0;it1<5;it1++){
        l2->al_nt[i][it1] = ((TrkTrack *)Track->At(i))->al[it1];
        for(int it2=0;it2<5;it2++)
          l2->coval[i][it2][it1] = ((TrkTrack *)Track->At(i))->coval[it1][it2];
      };
      for(int ip=0;ip<6;ip++){
        l2->xgood_nt[i][ip] = ((TrkTrack *)Track->At(i))->xgood[ip];
        l2->ygood_nt[i][ip] = ((TrkTrack *)Track->At(i))->ygood[ip];
        l2->xm_nt[i][ip]    = ((TrkTrack *)Track->At(i))->xm[ip];
        l2->ym_nt[i][ip]    = ((TrkTrack *)Track->At(i))->ym[ip];
        l2->zm_nt[i][ip]    = ((TrkTrack *)Track->At(i))->zm[ip];
        l2->resx_nt[i][ip]  = ((TrkTrack *)Track->At(i))->resx[ip];
        l2->resy_nt[i][ip]  = ((TrkTrack *)Track->At(i))->resy[ip];
        l2->xv_nt[i][ip]    = ((TrkTrack *)Track->At(i))->xv[ip];
        l2->yv_nt[i][ip]    = ((TrkTrack *)Track->At(i))->yv[ip];
        l2->zv_nt[i][ip]    = ((TrkTrack *)Track->At(i))->zv[ip];
        l2->axv_nt[i][ip]   = ((TrkTrack *)Track->At(i))->axv[ip];
        l2->ayv_nt[i][ip]   = ((TrkTrack *)Track->At(i))->ayv[ip];
        l2->dedx_x[i][ip]   = ((TrkTrack *)Track->At(i))->dedx_x[ip];
        l2->dedx_y[i][ip]   = ((TrkTrack *)Track->At(i))->dedx_y[ip];
      };
    }

//  *** SINGLETS ***    
    l2->nclsx              = SingletX->GetEntries();
    for(Int_t i=0;i<l2->nclsx;i++){
      l2->planex[i]  = ((TrkSinglet *)SingletX->At(i))->plane;
      l2->xs[i][0]   = ((TrkSinglet *)SingletX->At(i))->coord[0];
      l2->xs[i][1]   = ((TrkSinglet *)SingletX->At(i))->coord[1];
      l2->signlxs[i] = ((TrkSinglet *)SingletX->At(i))->sgnl;
    }
    l2->nclsy              = SingletY->GetEntries();
    for(Int_t i=0;i<l2->nclsy;i++){
      l2->planey[i]  = ((TrkSinglet *)SingletY->At(i))->plane;
      l2->ys[i][0]   = ((TrkSinglet *)SingletY->At(i))->coord[0];
      l2->ys[i][1]   = ((TrkSinglet *)SingletY->At(i))->coord[1];
      l2->signlys[i] = ((TrkSinglet *)SingletY->At(i))->sgnl;
    }
}
//--------------------------------------
//
//
//--------------------------------------
void TrkLevel2::Clear(){
    good2    = -1;
    for(Int_t i=0; i<12 ; i++){
        crc[i] = -1;
    };
/*    Track->RemoveAll();
    SingletX->RemoveAll();
    SingletY->RemoveAll();*/
        // modify to avoid memory leakage
        Track->Clear();
        SingletX->Clear();
        SingletY->Clear();
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Sort physical tracks and stores them in a TObjectArray, ordering by increasing chi**2 value (in case of track image, it selects the one with lower chi**2). The total number of physical tracks is given by GetNTracks() and the it-th physical track can be retrieved by means of the method GetTrack(int it).
 * This method is overridden by PamLevel2::GetTracks(), where calorimeter and TOF information is used.
 */
// TClonesArray *TrkLevel2::GetTracks(){
//      TClonesArray *sorted = GetTracks_NFitSorted();
//      return sorted;
// };

/*TClonesArray *TrkLevel2::GetTracks_Chi2Sorted(){

    TClonesArray *sorted = new TClonesArray("TrkTrack");
    TClonesArray &t = *Track;
    TClonesArray &ts = *sorted;
    int N=this->ntrk();
    vector<int> m(N); for(int i=0; i<N; i++)m[i]=1;

    int indo=0;
    int indi=0;
    while(N != 0){
        float chi2ref=1000000;
        for(int i=0; i<this->ntrk(); i++){
            if(((TrkTrack *)t[i])->chi2 < chi2ref && m[i]==1){
                chi2ref = ((TrkTrack *)t[i])->chi2;
                indi = i;
            }
        }
        if( ((TrkTrack *)t[indi])->image != -1 ){
            m[((TrkTrack *)t[indi])->image] = 0;
            N--;
        }
        new(ts[indo]) TrkTrack(*(TrkTrack*)t[indi]);
        m[indi] = 0;
        N--;    
        indo++; 
    }
    return sorted;
}*/
/*TClonesArray *TrkLevel2::GetTracks_NFitSorted(){

        TClonesArray *sorted = new TClonesArray("TrkTrack");    
    TClonesArray &t  = *Track;
        TClonesArray &ts = *sorted;
//    TClonesArray &ts = *PhysicalTrack;
        int N = ntrk();
    vector<int> m(N); for(int i=0; i<N; i++)m[i]=1;
//      int m[50]; for(int i=0; i<N; i++)m[i]=1;
        
    int indo=0;
    int indi=0;
    while(N != 0){
                int nfit =0;
                float chi2ref = numeric_limits<float>::max();
                // first loop to search maximum num. of fit points
                for(int i=0; i < ntrk(); i++){
//                      if(N==ntrk())cout << "** "<<i<< " " << ((TrkTrack *)t[i])->GetImageSeqNo()<< " " <<((TrkTrack *)t[i])->GetNtot() << " " <<((TrkTrack *)t[i])->chi2 << endl;
                        if( ((TrkTrack *)t[i])->GetNtot() >= nfit && m[i]==1){
                        nfit =    ((TrkTrack *)t[i])->GetNtot();
                        }
                }
                //second loop to search minimum chi2 among selected
                for(int i=0; i<this->ntrk(); i++){
                        if(    ((TrkTrack *)t[i])->chi2 < chi2ref 
                        && ((TrkTrack *)t[i])->GetNtot()== nfit 
                        && m[i]==1){
                        chi2ref = ((TrkTrack *)t[i])->chi2;
                        indi = i;
        //              cout << "2** "<<i<< " " << nfit <<" "<<chi2ref<<endl;
                        }
                }
                if( ((TrkTrack *)t[indi])->HasImage() ){
                        m[((TrkTrack *)t[indi])->image] = 0;
                        N--;
        
        //          Int_t nfiti=((TrkTrack *)t[((TrkTrack *)t[indi])->image  ])->GetNtot();
        //          Float_t chi2i=((TrkTrack *)t[((TrkTrack *)t[indi])->image  ])->chi2;
                        
        //          cout << "i** "<< ((TrkTrack *)t[indi])->image << " " << nfiti <<" "<<chi2i<<endl;
                }
                new(ts[indo]) TrkTrack(*(TrkTrack*)t[indi]);
                m[indi] = 0;
//              cout << "SORTED "<< indo << " "<< indi << " "<< N << endl; 
                N--;    
                indo++; 
    }
        m.clear();
    return sorted;
//    return PhysicalTrack;
}*/
//TClonesArray *TrkLevel2::GetTracks_NFitSorted(){
TRefArray *TrkLevel2::GetTracks_NFitSorted(){

//      cout << "GetTracks_NFitSorted(it): new TRefArray()"<< endl;
//      TClonesArray *sorted = new TClonesArray("TrkTrack");
//      TClonesArray &ts = *sorted;
        TRefArray *sorted = new TRefArray();
        
        TClonesArray &t  = *Track;
//    TClonesArray &ts = *PhysicalTrack;
        int N = ntrk();
        vector<int> m(N); for(int i=0; i<N; i++)m[i]=1;
//      int m[50]; for(int i=0; i<N; i++)m[i]=1;
        
        int indo=0;
        int indi=0;
        while(N != 0){
                int nfit =0;
                float chi2ref = numeric_limits<float>::max();
                
                // first loop to search maximum num. of fit points
                for(int i=0; i < ntrk(); i++){
                        if( ((TrkTrack *)t[i])->GetNtot() >= nfit && m[i]==1){
                                nfit =    ((TrkTrack *)t[i])->GetNtot();
                        }
                }
                //second loop to search minimum chi2 among selected
                for(int i=0; i<this->ntrk(); i++){
                        Float_t chi2 = ((TrkTrack *)t[i])->chi2; 
                        if(chi2 < 0) chi2 = chi2*1000;
                        if(    chi2 < chi2ref
                                && ((TrkTrack *)t[i])->GetNtot() == nfit 
                                && m[i]==1){
                                chi2ref = ((TrkTrack *)t[i])->chi2;
                                indi = i;
                        };
                };
                if( ((TrkTrack *)t[indi])->HasImage() ){
                        m[((TrkTrack *)t[indi])->image] = 0;
                        N--;
        
        //          Int_t nfiti=((TrkTrack *)t[((TrkTrack *)t[indi])->image  ])->GetNtot();
        //          Float_t chi2i=((TrkTrack *)t[((TrkTrack *)t[indi])->image  ])->chi2;
                        
        //          cout << "i** "<< ((TrkTrack *)t[indi])->image << " " << nfiti <<" "<<chi2i<<endl;
                };
//              new(ts[indo]) TrkTrack(*(TrkTrack*)t[indi]);
//              cout << "GetTracks_NFitSorted(it): Add("<<indo<<")"<< endl;
                sorted->Add( (TrkTrack*)t[indi] );      
                
                m[indi] = 0;
//              cout << "SORTED "<< indo << " "<< indi << " "<< N << endl; 
                N--;    
                indo++; 
        }
        m.clear();
//      cout << "GetTracks_NFitSorted(it): Done"<< endl;

        return sorted;
//    return PhysicalTrack;
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Retrieves the is-th stored track. 
 * @param it Track number, ranging from 0 to ntrk().
 * Fitted tracks ( images included ) are stored in a TObjectArray ( TrkLevel2::Track ) in the same order they are returned by the F77 fitting routine. 
 */
TrkTrack *TrkLevel2::GetStoredTrack(int is){

    if(is >= this->ntrk()){
        cout << "** TrkLevel2 ** Track "<< is << "doen not exits! " << endl; 
        cout << "                Stored tracks ntrk() = "<< this->ntrk() << endl;
        return 0;
    }
    TClonesArray &t = *(Track);
    TrkTrack *track = (TrkTrack*)t[is];
    return track;
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Retrieves the is-th stored X singlet. 
 * @param it Singlet number, ranging from 0 to nclsx().
 */
TrkSinglet *TrkLevel2::GetSingletX(int is){

        if(is >= this->nclsx()){
                cout << "** TrkLevel2 ** Singlet "<< is << "doen not exits! " << endl; 
                cout << "                Stored x-singlets nclsx() = "<< this->nclsx() << endl;
                return 0;
        }
        TClonesArray &t = *(SingletX);
        TrkSinglet *singlet = (TrkSinglet*)t[is];
        return singlet;
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Retrieves the is-th stored Y singlet. 
 * @param it Singlet number, ranging from 0 to nclsx().
 */
TrkSinglet *TrkLevel2::GetSingletY(int is){

        if(is >= this->nclsy()){
                cout << "** TrkLevel2 ** Singlet "<< is << "doen not exits! " << endl; 
                cout << "                Stored y-singlets nclsy() = "<< this->nclsx() << endl;
                return 0;
        }
        TClonesArray &t = *(SingletY);
        TrkSinglet *singlet = (TrkSinglet*)t[is];
        return singlet;
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Retrieves the it-th "physical" track, sorted by the method GetNTracks(). 
 * @param it Track number, ranging from 0 to GetNTracks().
 */
/*TrkTrack *TrkLevel2::GetTrack(int it){
    
    if(it >= this->GetNTracks()){
        cout << "** TrkLevel2 ** Track "<< it << "does not exits! " << endl; 
        cout << "                Physical tracks GetNTracks() = "<< this->ntrk() << endl;
        return 0;
    }
        TClonesArray* sorted = GetTracks();
        TClonesArray &ts = *sorted;
        
//    TrkTrack *track = (TrkTrack*)ts[it];
        TrkTrack *track = new TrkTrack( *(TrkTrack*)ts[it] ); //copia
        sorted->Delete("all");////TEMPORANEO
        return track;
}*/
TrkTrack *TrkLevel2::GetTrack(int it){
    
        if(it >= this->GetNTracks()){
                cout << "** TrkLevel2 ** Track "<< it << "does not exits! " << endl; 
                cout << "                Physical tracks GetNTracks() = "<< this->ntrk() << endl;
                return 0;
        }
        
        TRefArray *sorted = GetTracks();  //TEMPORANEO  
        TrkTrack *track = (TrkTrack*)sorted->At(it); 
        sorted->Delete();
        return track;
}
/**
 * Give the number of "physical" tracks, sorted by the method GetTracks(). 
 */
Int_t TrkLevel2::GetNTracks(){
                
        Float_t ntot=0;
        TClonesArray &t = *Track;
        for(int i=0; i<ntrk(); i++) {
                if( ((TrkTrack *)t[i])->GetImageSeqNo() == -1 ) ntot+=1.;
                else ntot+=0.5;
        }
        return (Int_t)ntot;

};
//--------------------------------------
//
//
//--------------------------------------
/**
 * Retrieves (if present) the image of the it-th "physical" track, sorted by the method GetNTracks(). 
 * @param it Track number, ranging from 0 to GetNTracks().
 */
/*TrkTrack *TrkLevel2::GetTrackImage(int it){

    if(it >= this->GetNTracks()){
        cout << "** TrkLevel2 ** Track "<< it << "does not exits! " << endl; 
        cout << "                Physical tracks GetNTracks() = "<< this->ntrk() << endl;
        return 0;
    }
        
        TClonesArray* sorted = GetTracks();
        TClonesArray &ts = *sorted;
        TrkTrack *track = (TrkTrack*)ts[it];
//    TrkTrack *track = (TrkTrack*)(*(this->GetTracks()))[it];
    
        if(!track->HasImage()){
        cout << "** TrkLevel2 ** Track "<< it << "does not have image! " << endl; 
        return 0;
    }
    TrkTrack *image = (TrkTrack*)(*Track)[track->image];

//      GetTracks()->Delete(); ////TEMPORANEO
        sorted->Delete(); ////TEMPORANEO
        
    return image;
    
}*/
TrkTrack *TrkLevel2::GetTrackImage(int it){

        if(it >= this->GetNTracks()){
                cout << "** TrkLevel2 ** Track "<< it << "does not exits! " << endl; 
                cout << "                Physical tracks GetNTracks() = "<< this->ntrk() << endl;
                return 0;
        }
        
        TRefArray* sorted = GetTracks(); //TEMPORANEO
        TrkTrack *track = (TrkTrack*)sorted->At(it);
        
        if(!track->HasImage()){
                cout << "** TrkLevel2 ** Track "<< it << "does not have image! " << endl; 
                return 0;
        }
        TrkTrack *image = (TrkTrack*)(*Track)[track->image];

        sorted->Delete(); 
        
        return image;
    
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Loads the magnetic field. 
 * @param s Path of the magnetic-field files.
 */
void TrkLevel2::LoadField(TString s){
    readb_(s.Data());
};
//--------------------------------------
//
//
//--------------------------------------
/**
 * Get tracker-plane (mechanical) z-coordinate
 * @param plane_id plane index (1=TOP,2,3,4,5,6=BOTTOM)
 */
Float_t TrkLevel2::GetZTrk(Int_t plane_id){
        switch(plane_id){
                case 1: return ZTRK1;
                case 2: return ZTRK2;
                case 3: return ZTRK3;
                case 4: return ZTRK4;
                case 5: return ZTRK5;
                case 6: return ZTRK6;
                default: return 0.;
        };
};
//--------------------------------------
//
//
//--------------------------------------
/**
 * Trajectory default constructor. 
 * (By default is created with z-coordinates inside the tracking volume)
  */
Trajectory::Trajectory(){
    npoint = 10;
    x = new float[npoint];
    y = new float[npoint];
    z = new float[npoint];
    thx = new float[npoint];
    thy = new float[npoint];
    tl = new float[npoint];
    float dz = ((ZTRK1)-(ZTRK6))/(npoint-1);
    for(int i=0; i<npoint; i++){
        x[i] = 0;
        y[i] = 0;
        z[i] = (ZTRK1) - i*dz;
        thx[i] = 0;
        thy[i] = 0;
        tl[i] = 0;
    }
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Trajectory constructor.
 * (By default is created with z-coordinates inside the tracking volume)
 * \param n Number of points
 */
Trajectory::Trajectory(int n){
    if(n<=0){
        cout << "NB! Trajectory must have at least 1 point >>> created with 10 points" << endl;
        n=10;
    }
    npoint = n;
    x = new float[npoint];
    y = new float[npoint];
    z = new float[npoint];
    thx = new float[npoint];
    thy = new float[npoint];
    tl = new float[npoint];
    float dz = ((ZTRK1)-(ZTRK6))/(npoint-1);
    for(int i=0; i<npoint; i++){
        x[i] = 0;
        y[i] = 0;
        z[i] = (ZTRK1) - i*dz;
        thx[i] = 0;
        thy[i] = 0;
        tl[i] = 0;
    }
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Trajectory constructor.
 * \param n Number of points
 * \param pz Pointer to float array, defining z coordinates
 */
Trajectory::Trajectory(int n, float* zin){
    npoint = 10;
    if(n>0)npoint = n;
    x = new float[npoint];
    y = new float[npoint];
    z = new float[npoint];
    thx = new float[npoint];
    thy = new float[npoint];
    tl = new float[npoint];
    int i=0;
    do{
                x[i] = 0;
                y[i] = 0;
                z[i] = zin[i];
                thx[i] = 0;
                thy[i] = 0;
                tl[i] = 0;
                i++;            
    }while(zin[i-1] > zin[i] && i < npoint);
    npoint=i;
    if(npoint != n)cout << "NB! Trajectory created with "<<npoint<<" points"<<endl;
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Dump the trajectory coordinates.
 */
void Trajectory::Dump(){
    cout <<endl<< "Trajectory ========== "<<endl;
    for (int i=0; i<npoint; i++){
        cout << i <<" >> " << x[i] <<" "<< y[i] <<" "<< z[i] ;
        cout <<" -- " << thx[i] <<" "<< thy[i] ;
        cout <<" -- " << tl[i] << endl;
    };
}
//--------------------------------------
//
//
//--------------------------------------
/**
 * Get trajectory length between two points
 * @param ifirst first point (default 0)
 * @param ilast last point (default npoint)
 */
float Trajectory::GetLength(int ifirst, int ilast){
    if( ifirst<0    ) ifirst = 0;
    if( ilast>=npoint) ilast  = npoint-1;
    float l=0;
    for(int i=ifirst;i<=ilast;i++){
        l=l+tl[i]; 
    };
    if(z[ilast] > ZINI)l=l-tl[ilast];
    if(z[ifirst] < ZINI)   l=l-tl[ifirst];
    
    return l;

}

ClassImp(TrkLevel2);
ClassImp(TrkSinglet);
ClassImp(TrkTrack);
ClassImp(Trajectory);