/[PAMELA software]/DarthVader/OrbitalInfo/src/OrbitalInfoCore.cpp

Diff of /DarthVader/OrbitalInfo/src/OrbitalInfoCore.cpp

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-revision 1.70 by mocchiut,
Fri Apr  4 08:46:01 2014 UTC
+revision 1.82 by malakhov,
Tue Mar  3 10:58:13 2015 UTC
 Line 26
  #include <TSQLServer.h>
  #include <TSQLRow.h>
  #include <TSQLResult.h>
+ #include <TObjectTable.h>
  //
  // RunInfo header
  //
-Line 53
+Line 54
  //
  #include <ToFLevel2.h>
  #include <TrkLevel2.h>
+ #include <ExtTrack.h> // new tracking code
  using namespace std;
-Line 60 
 using namespace std;
+Line 62 
 using namespace std;
  // CORE ROUTINE
  //
  //
  int OrbitalInfoCore(UInt_t run, TFile *file, GL_TABLES *glt, Int_t OrbitalInfoargc, char *OrbitalInfoargv[]){
    //
    Int_t i = 0;
    TString host = glt->CGetHost();
-Line 70 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 72 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    stringstream myquery;
    myquery.str("");
-   myquery << "SET time_zone='+0:00'";
+   myquery << "SET time_zone='+0:00';";
    delete dbc->Query(myquery.str().c_str());
+   delete dbc->Query("SET sql_mode = 'NO_UNSIGNED_SUBTRACTION';");
    //
    TString processFolder = Form("OrbitalInfoFolder_%u",run);
    //
-Line 89 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 92 
 int OrbitalInfoCore(UInt_t run, TFile *f
        if ( !strcmp(OrbitalInfoargv[i],"-processFolder") ) {
          if ( OrbitalInfoargc < i+1 ){
            throw -3;
-         };
+         }
          processFolder = (TString)OrbitalInfoargv[i+1];
          i++;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--debug")) || (!strcmp(OrbitalInfoargv[i],"-g")) ) {
          verbose = true;
          debug = true;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--verbose")) || (!strcmp(OrbitalInfoargv[i],"-v")) ) {
          verbose = true;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--standalone")) ) {
          standalone = true;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--calculate-pitch")) ) {
          standalone = false;
-       };
+       }
        i++;
-     };
+     }
-   };
+   }
+   if ( debug ){
+     printf("START\n");
+     gObjectTable->Print();
+   }
    //
    const char* outDir = gSystem->DirName(gSystem->DirName(file->GetPath()));
    //
-Line 188 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 195 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    // IGRF stuff
    //
-   Double_t dimo = 0.0; // dipole moment (computed from dat files) // EM GCC 4.7
+   Float_t dimo = 0.0; // dipole moment (computed from dat files) // EM GCC 4.7
    Float_t bnorth, beast, bdown, babs;
    Float_t xl; // L value
    Float_t icode; // code value for L accuracy (see fortran code)
-Line 241 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 248 
 int OrbitalInfoCore(UInt_t run, TFile *f
    // Initialize fortran routines!!!
    Int_t ltp1 = 0;
    Int_t ltp2 = 0;
-   Int_t ltp3 = 0;
-   //  Int_t uno = 1;
-   //  const char *niente = " ";
    GL_PARAM *glparam0 = new GL_PARAM();
    GL_PARAM *glparam = new GL_PARAM();
    GL_PARAM *glparam2 = new GL_PARAM();
-   GL_PARAM *glparam3 = new GL_PARAM();
    //
    // Orientation variables. Vitaly
    //
    UInt_t evfrom = 0;
    UInt_t jumped = 0;
    Int_t itr = -1;
-Line 279 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 283 
 int OrbitalInfoCore(UInt_t run, TFile *f
    vector<Float_t> recq2;
    vector<Float_t> recq3;
    Float_t Norm = 1;
+   recqtime.reserve(1500000);
+   recq0.reserve(1500000);
+   recq1.reserve(1500000);
+   recq2.reserve(1500000);
+   recq3.reserve(1500000);
+   vector<UInt_t> RTtime1;
+   vector<UInt_t> RTtime2;
+   vector<Double_t> RTbank1;
+   vector<Double_t> RTbank2;
+   vector<Double_t> RTbpluto1;
+   vector<Double_t> RTbpluto2;
+   vector<Int_t> RTazim;
+   vector<UInt_t> RTstart;
+   vector<UInt_t> RTpluto2;
+   vector<UInt_t> RTpluto1;
+   vector<Int_t> RTerrq;
+   vector<Int_t> RTqual;
+   RTtime1.reserve(200000);
+   RTtime2.reserve(200000);
+   RTbank1.reserve(200000);
+   RTbank2.reserve(200000);
+   RTbpluto1.reserve(200000);
+   RTbpluto2.reserve(200000);
+   RTazim.reserve(200000);
+   RTstart.reserve(200000);
+   RTpluto1.reserve(200000);
+   RTpluto2.reserve(200000);
+   RTerrq.reserve(200000);
+   RTqual.reserve(200000);
+   TClonesArray *tcNucleiTrk = NULL;
+   TClonesArray *tcExtNucleiTrk = NULL;
+   TClonesArray *tcExtTrk = NULL;
+   TClonesArray *tcNucleiTof = NULL;
+   TClonesArray *tcExtNucleiTof = NULL;
+   TClonesArray *tcExtTof = NULL;
+   TClonesArray *torbNucleiTrk = NULL;
+   TClonesArray *torbExtNucleiTrk = NULL;
+   TClonesArray *torbExtTrk = NULL;
+   Bool_t hasNucleiTrk = false;
+   Bool_t hasExtNucleiTrk = false;
+   Bool_t hasExtTrk = false;
+   Bool_t hasNucleiTof = false;
+   Bool_t hasExtNucleiTof = false;
+   Bool_t hasExtTof = false;
+   ifstream in;
+   ifstream an;
+   //  ofstream mc;
+   //  TString gr;
+   Int_t parerror2=0;
    Int_t parerror=glparam0->Query_GL_PARAM(1,303,dbc); // parameters stored in DB in GL_PRAM table
-   cout<<parerror<<"\t"<<(char*)(glparam0->PATH+glparam0->NAME).Data()<<endl;
+   if ( verbose ) cout<<parerror<<"\t"<<(char*)(glparam0->PATH+glparam0->NAME).Data()<<endl;
-   ifstream in((char*)(glparam0->PATH+glparam0->NAME).Data(),ios::in);
    if ( parerror<0 ) {
      code = parerror;
-     //goto closeandexit;
+     goto closeandexit;
    }
+   in.open((char*)(glparam0->PATH+glparam0->NAME).Data(),ios::in);
    while(!in.eof()){
      recqtime.resize(recqtime.size()+1);
      Int_t sizee = recqtime.size();
-Line 299 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 356 
 int OrbitalInfoCore(UInt_t run, TFile *f
      in>>recq2[sizee-1];
      in>>recq3[sizee-1];
      in>>Norm;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM
+     if(recqtime[sizee-1]>=1160987921.75 && recqtime[sizee-1]<=1160987932.00){
+       cout<<"We found it at start"<<"\t"<<recqtime[sizee-1]<<endl;
+     } */
    }
    in.close();
    if ( verbose ) cout<<"We have read recovered data"<<endl;
    if (debug) cout << "size of recovered quaterions data set is " << recqtime.size() << endl;
+   if ( debug )  printf(" RQ size %i RQ capacity %i \n",(int)recqtime.size(),(int)recqtime.capacity());
-   vector<UInt_t> RTtime1;
-   vector<UInt_t> RTtime2;
-   vector<Double_t> RTbank1;
-   vector<Double_t> RTbank2;
-   vector<Int_t> RTazim;
-   vector<Int_t> RTdir1;
-   vector<Int_t> RTdir2;
-   vector<Int_t> RTerrq;
- // 10RED CHECK
- //  TH2F* DIFFX = new TH2F("diffx","",100,0,100,90,0,90);
- //  TH2F* DIFFY = new TH2F("diffy","",100,0,100,90,0,90);
- //  TH2F* DIFFZ = new TH2F("diffz","",100,0,100,90,0,90);
-   ofstream mc;
-   TString gr = "methodscomparison_";
-   gr+=run;
-   gr+=".txt";
-   mc.open(gr);
-   mc.setf(ios::fixed,ios::floatfield);
- // 10RED CHECK END
    if ( verbose ) cout<<"read Rotation Table"<<endl;
+   parerror2=glparam0->Query_GL_PARAM(1,305,dbc);
-   Int_t parerror2=glparam0->Query_GL_PARAM(1,305,dbc);
+   if ( verbose ) cout<<parerror2<<"\t"<<(char*)(glparam0->PATH+glparam0->NAME).Data()<<endl;
-   ifstream an((char*)(glparam0->PATH+glparam0->NAME).Data(),ios::in);
+   if ( parerror2<0 ) {
-   cout<<parerror2<<"\t"<<(char*)(glparam0->PATH+glparam0->NAME).Data()<<endl;
+     code = parerror;
- //  if ( parerror2<0 ) {
+     goto closeandexit;
- //    code = parerror;
+   }
-     //goto closeandexit;
+   an.open((char*)(glparam0->PATH+glparam0->NAME).Data(),ios::in);
- //  }
- //ifstream an("/data03/Malakhov/pam9Malakhov/installed10/calib/orb-param/RDBCC.txt",ios::in);
    while(!an.eof()){
      RTtime1.resize(RTtime1.size()+1);
      Int_t sizee = RTtime1.size();
      RTbank1.resize(sizee+1);
      RTazim.resize(sizee+1);
-     RTdir1.resize(sizee+1);
      RTerrq.resize(sizee+1);
+     RTstart.resize(sizee+1);
+     RTpluto1.resize(sizee+1);
+     RTbpluto1.resize(sizee+1);
+     RTqual.resize(sizee+1);
      an>>RTtime1[sizee-1];
      an>>RTbank1[sizee-1];
+     an>>RTstart[sizee-1];
+     an>>RTpluto1[sizee-1];
+     an>>RTbpluto1[sizee-1];
      an>>RTazim[sizee-1];
-     an>>RTdir1[sizee-1];
      an>>RTerrq[sizee-1];
+     an>>RTqual[sizee-1];
      if(sizee>1) {
        RTtime2.resize(sizee+1);
        RTbank2.resize(sizee+1);
-       RTdir2.resize(sizee+1);
+       RTpluto2.resize(sizee+1);
+       RTbpluto2.resize(sizee+1);
        RTtime2[sizee-2]=RTtime1[sizee-1];
+       RTpluto2[sizee-2]=RTpluto1[sizee-1];
        RTbank2[sizee-2]=RTbank1[sizee-1];
-       RTdir2[sizee-2]=RTdir1[sizee-1];
+       RTbpluto2[sizee-2]=RTbpluto1[sizee-1];
      }
    }
    an.close();
-Line 366 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 412 
 int OrbitalInfoCore(UInt_t run, TFile *f
    if ( verbose ) cout<<"We have read Rotation Table"<<endl;
      //Geomagnetic coordinates calculations staff
+   if ( debug ) printf(" RT size %i RT capacity %i \n",(int)RTtime2.size(),(int)RTtime2.capacity());
    GMtype_CoordGeodetic location;
    //  GMtype_CoordDipole GMlocation;
-Line 376 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 424 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //    TString igpath="/data03/Malakhov/pam9Malakhov/installed10/calib/orb-param/";
    //  }
-   //  GM_ScanIGRF(glparam->PATH, &G0, &G1, &H1);
-   GM_ScanIGRF(dbc, &G0, &G1, &H1);
    //cout << G0.element[0] << "\t" << G1.element[0] << "\t" << H1.element[0] << endl;
    //cout << G0.element[5] << "\t" << G1.element[5] << "\t" << H1.element[5] << endl;
-Line 392 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 437 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    if ( !standalone ){
      //
-     // Does it contain the Tracker tree?
+     // Does it contain the Tracker and ToF trees?
      //
      ttof = (TTree*)file->Get("ToF");
      if ( !ttof ) {
-Line 403 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 448 
 int OrbitalInfoCore(UInt_t run, TFile *f
      ttof->SetBranchAddress("ToFLevel2",&tof);
      nevtofl2 = ttof->GetEntries();
+     //
+     // Look for extended tracking algorithm
+     //
+     if ( verbose ) printf("Look for extended and nuclei tracking algorithms in ToF\n");
+     // Nuclei tracking algorithm
+     Int_t checkAlgo = 0;
+     tcNucleiTof =  new TClonesArray("ToFTrkVar");
+     checkAlgo = ttof->SetBranchAddress("TrackNuclei",&tcNucleiTof);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Nuclei tracking algorithm ToF branch found! :D \n");
+       hasNucleiTof = true;
+     } else {
+       if ( verbose ) printf(" Nuclei tracking algorithm ToF branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcNucleiTof;
+       tcNucleiTof=NULL; // 10RED reprocessing bug
+     }
+     // Nuclei tracking algorithm using calorimeter points
+     tcExtNucleiTof =  new TClonesArray("ToFTrkVar");
+     checkAlgo = ttof->SetBranchAddress("RecoveredTrackNuclei",&tcExtNucleiTof);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm ToF branch found! :D \n");
+       hasExtNucleiTof = true;
+     } else {
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm ToF branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtNucleiTof;
+       tcExtNucleiTof=NULL; // 10RED reprocessing bug
+     }
+     // Tracking algorithm using calorimeter points
+     tcExtTof =  new TClonesArray("ToFTrkVar");
+     checkAlgo = ttof->SetBranchAddress("RecoveredTrack",&tcExtTof);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered track algorithm ToF branch found! :D \n");
+       hasExtTof = true;
+     } else {
+       if ( verbose ) printf(" Recovered track algorithm ToF branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtTof;
+       tcExtTof=NULL; // 10RED reprocessing bug
+     }
      ttrke = (TTree*)file->Get("Tracker");
      if ( !ttrke ) {
        if ( verbose ) printf(" OrbitalInfo - ERROR: no trk tree\n");
-Line 411 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 498 
 int OrbitalInfoCore(UInt_t run, TFile *f
      }
      ttrke->SetBranchAddress("TrkLevel2",&trke);
      nevtrkl2 = ttrke->GetEntries();
+     //
+     // Look for extended tracking algorithm
+     //
+     if ( verbose ) printf("Look for extended and nuclei tracking algorithms\n");
+     // Nuclei tracking algorithm
+     checkAlgo = 0;
+     tcNucleiTrk =  new TClonesArray("TrkTrack");
+     checkAlgo = ttrke->SetBranchAddress("TrackNuclei",&tcNucleiTrk);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Nuclei tracking algorithm branch found! :D \n");
+       hasNucleiTrk = true;
+     } else {
+       if ( verbose ) printf(" Nuclei tracking algorithm branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcNucleiTrk;
+       tcNucleiTrk=NULL; // 10RED reprocessing bug
+     }
+     // Nuclei tracking algorithm using calorimeter points
+     tcExtNucleiTrk =  new TClonesArray("ExtTrack");
+     checkAlgo = ttrke->SetBranchAddress("RecoveredTrackNuclei",&tcExtNucleiTrk);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm branch found! :D \n");
+       hasExtNucleiTrk = true;
+     } else {
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtNucleiTrk;
+       tcExtNucleiTrk=NULL; // 10RED reprocessing bug
+     }
+     // Tracking algorithm using calorimeter points
+     tcExtTrk =  new TClonesArray("ExtTrack");
+     checkAlgo = ttrke->SetBranchAddress("RecoveredTrack",&tcExtTrk);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered track algorithm branch found! :D \n");
+       hasExtTrk = true;
+     } else {
+       if ( verbose ) printf(" Recovered track algorithm branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtTrk;
+       tcExtTrk=NULL; // 10RED reprocessing bug
+     }
+     if ( (hasNucleiTrk && !hasNucleiTof) || (!hasNucleiTrk && hasNucleiTof) ||
+          (hasExtNucleiTrk && !hasExtNucleiTof) || (!hasExtNucleiTrk && hasExtNucleiTof) ||
+          (hasExtTrk && !hasExtTof) || (!hasExtTrk && hasExtTof)
+          ){
+       if ( verbose ) printf(" ERROR: Mismatch between tracker and tof tree branches concerning extended tracking algorithm(s)\n");
+       if ( debug ) printf("hasNucleiTrk %i hasExtNucleiTrk %i hasExtTrk %i \n",hasNucleiTrk,hasExtNucleiTrk,hasExtTrk);
+       if ( debug ) printf("hasNucleiTof %i hasExtNucleiTof %i hasExtTof %i \n",hasNucleiTof,hasExtNucleiTof,hasExtTof);
+       throw -901;
+     }
    }
    //
    // Let's start!
-Line 539 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 679 
 int OrbitalInfoCore(UInt_t run, TFile *f
    orbitalinfo->Set();//ELENA **TEMPORANEO?**
    OrbitalInfotr->Branch("OrbitalInfo","OrbitalInfo",&orbitalinfo);
    //
+   // create new branches for new tracking algorithms
+   //
+   if ( hasNucleiTrk ){
+     torbNucleiTrk = new TClonesArray("OrbitalInfoTrkVar",1);
+     OrbitalInfotr->Branch("TrackNuclei",&torbNucleiTrk);
+   }
+   if ( hasExtNucleiTrk ){
+     torbExtNucleiTrk = new TClonesArray("OrbitalInfoTrkVar",1);
+     OrbitalInfotr->Branch("RecoveredTrackNuclei",&torbExtNucleiTrk);
+   }
+   if ( hasExtTrk ){
+     torbExtTrk = new TClonesArray("OrbitalInfoTrkVar",1);
+     OrbitalInfotr->Branch("RecoveredTrack",&torbExtTrk);
+   }
+   //
    if ( reproc && !reprocall ){
      //
      //  open new file and retrieve also tree informations
-Line 560 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 716 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          // copy orbitalinfoclone to mydec
          //
-         orbitalinfo->Clear();
+         //      orbitalinfo->Clear();
          //
          memcpy(&orbitalinfo,&orbitalinfoclone,sizeof(orbitalinfoclone));
          //
-Line 577 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 733 
 int OrbitalInfoCore(UInt_t run, TFile *f
    // Get the list of run to be processed, if only one run has to be processed the list will contain one entry only.
    //
    runlist = runinfo->GetRunList();
+   if ( debug ){
+     printf("BEFORE LOOP ON RUN\n");
+     gObjectTable->Print();
+   }
    //
    // Loop over the run to be processed
    //
-   for (UInt_t irun=0; irun < numbofrun; irun++){
+   for (UInt_t irun=0; irun < numbofrun; irun++){ //===>
      L_QQ_Q_l_lower = new Quaternions();
      RYPang_lower = new InclinationInfo();
-Line 689 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 849 
 int OrbitalInfoCore(UInt_t run, TFile *f
        goto closeandexit;
      };
-     //
-     // open IGRF files and do it only once if we are processing a full level2 file
-     //
-     if ( !igrfloaded ){
-       if ( l0head->GetEntry(runinfo->EV_FROM) > 0 ){
-         igrfloaded = true;
-         //
-         // absolute time of first event of the run (it should not matter a lot)
-         //
-         ph = eh->GetPscuHeader();
-         atime = dbtime->DBabsTime(ph->GetOrbitalTime());
-         parerror=glparam->Query_GL_PARAM(atime-anni5,301,dbc); // parameters stored in DB in GL_PRAM table
-         if ( parerror<0 ) {
-           code = parerror;
-           goto closeandexit;
-         }
-         ltp1 = (Int_t)(glparam->PATH+glparam->NAME).Length();
-         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam->PATH+glparam->NAME).Data());
-         //
-         parerror=glparam2->Query_GL_PARAM(atime,301,dbc); // parameters stored in DB in GL_PRAM table
-         if ( parerror<0 ) {
-           code = parerror;
-           goto closeandexit;
-         }
-         ltp2 = (Int_t)(glparam2->PATH+glparam2->NAME).Length();
-         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam2->PATH+glparam2->NAME).Data());
-         //
-         parerror=glparam3->Query_GL_PARAM(atime,302,dbc); // parameters stored in DB in GL_PRAM table
-         if ( parerror<0 ) {
-           code = parerror;
-           goto closeandexit;
-         }
-         ltp3 = (Int_t)(glparam3->PATH+glparam3->NAME).Length();
-         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam3->PATH+glparam3->NAME).Data());
-         //
-         initize_((char *)(glparam->PATH+glparam->NAME).Data(),&ltp1,(char *)(glparam2->PATH+glparam2->NAME).Data(),&ltp2,(char *)(glparam3->PATH+glparam3->NAME).Data(),&ltp3);
-         //
-         if (debug) cout<<"initize: "<<(char *)(glparam->PATH+glparam->NAME).Data()<<"\t"<<(char *)(glparam2->PATH+glparam2->NAME).Data()<<"\t"<<(char *)(glparam3->PATH+glparam3->NAME).Data()<<endl;
-       }
-     }
-     //
-     // End IGRF stuff//
-     //
-     //
-     //     TTree *tp = (TTree*)l0File->Get("RunHeader");
-     //     tp->SetBranchAddress("Header", &eH);
-     //     tp->SetBranchAddress("RunHeader", &reh);
-     //     tp->GetEntry(0);
-     //     ph = eH->GetPscuHeader();
-     //     ULong_t TimeSync = reh->LAST_TIME_SYNC_INFO;
-     //     ULong_t ObtSync = reh->OBT_TIME_SYNC;
-     //     if ( debug ) printf(" 1 TimeSync %lu ObtSync %lu DeltaOBT %lu\n",TimeSync,ObtSync,TimeSync-ObtSync);
-     //
      ULong_t TimeSync = (ULong_t)dbtime->GetTimesync();
      ULong_t ObtSync = (ULong_t)(dbtime->GetObt0()/1000);
      ULong_t DeltaOBT = TimeSync - ObtSync;
-Line 780 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 884 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          l0fid[i] = (UInt_t)atoll(Row->GetField(0));
          i--;
+         if (Row){  // memleak!
+           delete Row;
+           Row = 0;
+         }
          Row = pResult->Next();
          //
-       };
+       }
+       if (Row) delete Row;
        pResult->Delete();
-     };
+     }
      //
      myquery.str("");
      myquery << "select ID_ROOT_L0 from GL_RUN where RUNHEADER_TIME>" << runinfo->RUNHEADER_TIME << " group by ID_ROOT_L0 order by RUNHEADER_TIME asc limit 5;";
-Line 802 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 911 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          l0fid[i] = (UInt_t)atoll(Row->GetField(0));
          i++;
+         if (Row){  // memleak!
+           delete Row;
+           Row = 0;
+         }
          Row = pResult->Next();
          //
-       };
+       }
+       if (Row) delete Row;
        pResult->Delete();
-     };
+     }
      //
      i = 0;
      UInt_t previd = 0;
-Line 825 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 939 
 int OrbitalInfoCore(UInt_t run, TFile *f
            if ( debug ) printf(" Using inclination informations from file: %s \n",(((TString)gSystem->ExpandPathName(Row->GetField(0)))+"/"+(TString)Row->GetField(1)).Data());
            ch->Add(((TString)gSystem->ExpandPathName(Row->GetField(0)))+"/"+(TString)Row->GetField(1));
            //
+           if (Row) delete Row;
            pResult->Delete();
-         };
+         }
-       };
+       }
        i++;
-     };
+     }
      //
-     //    l0trm = (TTree*)l0File->Get("Mcmd");
-     //    ch->ls();
      ch->SetBranchAddress("Mcmd",&mcmdev);
-     //    printf(" entries %llu \n", ch->GetEntries());
-     //    l0trm = ch->GetTree();
-     //    neventsm = l0trm->GetEntries();
      neventsm = ch->GetEntries();
      if ( debug ) printf(" entries %u \n", neventsm);
-     //    neventsm = 0;
      //
      if (neventsm == 0){
        if ( debug ) printf("InclinationInfo - WARNING: No quaternions in this File");
-       //      l0File->Close();
        code = 900;
-       //      goto closeandexit;
      }
      //
+     Double_t lowerqtime = 0;
-     //    l0trm->SetBranchAddress("Mcmd", &mcmdev);
-     //    l0trm->SetBranchAddress("Header", &eh);
-     //
-     //
-     //
- //    UInt_t mctren = 0;
- //    UInt_t mcreen = 0;
- //    UInt_t numrec = 0;
-     //
-     //    Double_t upperqtime = 0;
-     Double_t lowerqtime = 0;
-     //    Double_t incli = 0;
-     //    oi = 0;
-     //    UInt_t ooi = 0;
      //
      // init quaternions information from mcmd-packets
      //
      Bool_t isf = true;
-     //    Int_t fgh = 0;
      vector<Float_t> q0;
      vector<Float_t> q1;
-Line 881 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 971 
 int OrbitalInfoCore(UInt_t run, TFile *f
      vector<Float_t> qYaw;
      vector<Int_t> qmode;
+     q0.reserve(4096);
+     q1.reserve(4096);
+     q2.reserve(4096);
+     q3.reserve(4096);
+     qtime.reserve(4096);
+     qPitch.reserve(4096);
+     qRoll.reserve(4096);
+     qYaw.reserve(4096);
+     qmode.reserve(4096);
+     if ( debug ) printf(" q0 capa %i \n",(int)q0.capacity());
      Int_t nt = 0;
      UInt_t must = 0;
+     Int_t currentYear = 0;
+     Int_t previousYear = 0;
      //
      // run over all the events of the run
      //
      if (verbose) printf("\n Ready to start! \n\n Processed events: \n\n");
+     if ( debug ){
+       printf("BEFORE LOOP ON EVENTS\n");
+       gObjectTable->Print();
+     }
      //
      //
      for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+runinfo->NEVENTS); re++){
+       //for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+10); re++){
        //
        if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000);
        if ( debug ) printf(" %i \n",procev);
-Line 913 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1021 
 int OrbitalInfoCore(UInt_t run, TFile *f
          continue;
        }
+       // just for testing:
+       //      if (re >= 5+runinfo->EV_FROM) atime += anni5;
+       //      if (re >= 7+runinfo->EV_FROM) atime += anni5;
+       //      if (re >= 9+runinfo->EV_FROM) atime += anni5;
+       //
+       // open IGRF files and do it only once if we are processing a full level2 file
+       //
+       Float_t kkyear;
+       UInt_t kyear, kmonth, kday, khour, kmin, ksec;
+       //
+       TTimeStamp kt = TTimeStamp(atime, kTRUE);
+       kt.GetDate(kTRUE, 0, &kyear, &kmonth, &kday);
+       kt.GetTime(kTRUE, 0, &khour, &kmin, &ksec);
+       kkyear = (float) kyear
+         + (kmonth*31.+ (float) kday)/365.
+         + (khour*3600.+kmin*60.+(float)ksec)/(24.*3600.*365.);
+       currentYear = int(kkyear/5.) * 5;
+       if ( debug ) printf(" prevy %i curry %i igrfloaded %i \n",previousYear,currentYear,igrfloaded);
+       if ( currentYear != previousYear ) igrfloaded = false;
+       previousYear = currentYear;
+       if ( debug ) printf(" prevy %i curry %i igrfloaded %i \n",previousYear,currentYear,igrfloaded);
+       //
+       if ( !igrfloaded ){
+         igrfloaded = true;
+         parerror=glparam->Query_GL_PARAM(atime,302,dbc); // parameters stored in DB in GL_PRAM table
+         if ( parerror<0 ) {
+           code = parerror;
+           goto closeandexit;
+         }
+         ltp1 = (Int_t)(glparam->PATH+glparam->NAME).Length();
+         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam->PATH+glparam->NAME).Data());
+         //
+         if ( glparam->NAME.EndsWith("s.txt") || glparam->NAME.EndsWith("s.dat") ){
+           if ( verbose ) printf("ERROR: Current date is beyond the latest secular variation file time span. Please update IGRF files to process data\n");
+           throw -906;
+         }
+         //
+         int isSecular = false;
+         //
+         parerror=glparam2->Query_GL_PARAM(atime+anni5,302,dbc); // parameters stored in DB in GL_PRAM table
+         if ( parerror<0 ) {
+           code = parerror;
+           goto closeandexit;
+         }
+         ltp2 = (Int_t)(glparam2->PATH+glparam2->NAME).Length();
+         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam2->PATH+glparam2->NAME).Data());
+         if ( glparam2->NAME.EndsWith("s.txt") || glparam2->NAME.EndsWith("s.dat") ){
+           isSecular = true;
+           if ( verbose ) printf(" Using secular variation file and hence fortran subroutine 'extrapolation'\n");
+         } else {
+           if ( verbose ) printf(" Using two field measurement files and hence fortran subroutine 'interpolation'\n");
+         }
+         //
+         initize_(&isSecular,(char *)(glparam->PATH+glparam->NAME).Data(),&ltp1,(char *)(glparam2->PATH+glparam2->NAME).Data(),&ltp2);
+         //
+         if (debug) cout<<"initize: "<<(char *)(glparam->PATH+glparam->NAME).Data()<<"\t"<<(char *)(glparam2->PATH+glparam2->NAME).Data()<<"\t isSecular? "<<isSecular<<endl;
+         //        GM_ScanIGRF(dbc, &G0, &G1, &H1);
+         TString igrfFile1 = glparam->PATH+glparam->NAME;
+         TString igrfFile2 = glparam2->PATH+glparam2->NAME;
+         GM_SetIGRF(isSecular,igrfFile1,igrfFile2, &G0, &G1, &H1);
+       }
+       //
+       // End IGRF stuff//
+       //
        //
        // retrieve tof informations
        //
-Line 934 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1111 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          tof->Clear();
          //
+         // Clones array must be cleared before going on
+         //
+         if ( hasNucleiTof ){
+           tcNucleiTof->Delete();
+         }
+         if ( hasExtNucleiTof ){
+           tcExtNucleiTof->Delete();
+         }
+         if ( hasExtTof ){
+           tcExtTof->Delete();
+         }
+         //
+         if ( verbose ) printf(" get tof tree entries... entry = %i in Level2 file\n",itr);
          if ( ttof->GetEntry(itr) <= 0 ){
-          if ( verbose ) printf(" problems with tof tree entries... entry = %i in Level2 file\n",itr);
+           if ( verbose ) printf(" problems with tof tree entries... entry = %i in Level2 file\n",itr);
-          if ( verbose ) printf(" nobefrun %u re %u evfrom %u jumped %u reprocall %i \n",nobefrun,re,evfrom,jumped,reprocall);
+           if ( verbose ) printf(" nobefrun %u re %u evfrom %u jumped %u reprocall %i \n",nobefrun,re,evfrom,jumped,reprocall);
-          throw -36;
+           throw -36;
          }
+         if ( verbose ) printf(" gat0\n");
          //
        }
        //
-Line 951 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1142 
 int OrbitalInfoCore(UInt_t run, TFile *f
            l0File->Close();
            code = -905;
            goto closeandexit;
-         };
+         }
          //
+         if ( verbose ) printf(" gat1\n");
          trke->Clear();
          //
+         // Clones array must be cleared before going on
+         //
+         if ( hasNucleiTrk ){
+           if ( verbose ) printf(" gat2\n");
+           tcNucleiTrk->Delete();
+           if ( verbose ) printf(" gat3\n");
+           torbNucleiTrk->Delete();
+         }
+         if ( hasExtNucleiTrk ){
+           if ( verbose ) printf(" gat4\n");
+           tcExtNucleiTrk->Delete();
+           if ( verbose ) printf(" gat5\n");
+           torbExtNucleiTrk->Delete();
+         }
+         if ( hasExtTrk ){
+           if ( verbose ) printf(" gat6\n");
+           tcExtTrk->Delete();
+           if ( verbose ) printf(" gat7\n");
+           torbExtTrk->Delete();
+         }
+         //
+         if ( verbose ) printf(" get trk tree entries... entry = %i in Level2 file\n",itr);
          if ( ttrke->GetEntry(itr) <= 0 ) throw -36;
          //
        }
        //
        procev++;
        //
-Line 1012 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1225 
 int OrbitalInfoCore(UInt_t run, TFile *f
            feldcof_(&jyear, &dimo); // get dipole moment for year
            if ( debug ) printf(" %i compute magnetic dipole moment end\n",procev);
-           GM_TimeAdjustCoefs(year, jyear, G0, G1, H1, &Model);
+           //      GM_TimeAdjustCoefs(year, jyear, G0, G1, H1, &Model);
+           GM_TimeAdjustCoefs(GM_STARTYEAR, (jyear-currentYear+GM_STARTYEAR), G0, G1, H1, &Model);  // EM: input this way due to the new way of storing data into Gn,H1 and to avoid changing GM_Time...
            GM_PoleLocation(Model, &Pole);
          } else {
-Line 1086 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1300 
 int OrbitalInfoCore(UInt_t run, TFile *f
                              qRoll[sizeqmcmd]=RYPang_upper->Kren;
                              qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
                              qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
                            }
                          }
                          if(recqtime[mu]>=u_time){
-Line 1104 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1322 
 int OrbitalInfoCore(UInt_t run, TFile *f
                              qRoll[sizeqmcmd]=RYPang_upper->Kren;
                              qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
                              qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
                              break;
                            }
                          }
-Line 1135 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1357 
 int OrbitalInfoCore(UInt_t run, TFile *f
                      for(Int_t mu = nt;mu<recSize;mu++){
                        if(recqtime[mu]>lowerqtime && recqtime[mu]<u_time){
                           if(sqrt(pow(recq0[mu],2)+pow(recq1[mu],2)+pow(recq2[mu],2)+pow(recq3[mu],2))>0.99999){
-                            nt=mu;
+ //                         nt=mu;
                             Int_t sizeqmcmd = qtime.size();
                             inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
                             qtime[sizeqmcmd]=recqtime[mu];
-Line 1149 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1371 
 int OrbitalInfoCore(UInt_t run, TFile *f
                             qRoll[sizeqmcmd]=RYPang_upper->Kren;
                             qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
                             qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
                           }
                        }
                        if(recqtime[mu]>=u_time){
-Line 1168 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1394 
 int OrbitalInfoCore(UInt_t run, TFile *f
                             qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
                             qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
                             CopyQ(L_QQ_Q_l_lower,L_QQ_Q_l_upper);
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
                             break;
                           }
                        }
-Line 1282 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1512 
 int OrbitalInfoCore(UInt_t run, TFile *f
                orbitalinfo->q2 =  incli*atime+q2[mu+1]-incli*qtime[mu+1];
                incli = (q3[mu+1]-q3[mu])/(qtime[mu+1]-qtime[mu]);
                orbitalinfo->q3 =  incli*atime+q3[mu+1]-incli*qtime[mu+1];
-               Float_t tg = (qtime[mu+1]-qtime[mu])/1000.;
+               Float_t tg = (qtime[mu+1]-qtime[mu])/1000.0;
                if(tg>=1) tg=0.00;
                orbitalinfo->TimeGap = TMath::Min(TMath::Abs(qtime[mu+1])-atime,TMath::Abs(atime-qtime[mu]))+tg;//qtime[mu+1]-qtime[mu];
                orbitalinfo->mode = qmode[mu+1];
                //if(atime==qtime[mu] || atime==qtime[mu+1]) orbitalinfo->qkind = 0; else orbitalinfo->qkind=1;
                //if(qmode[mu+1]==-10) orbitalinfo->R10r = true;else orbitalinfo->R10r = false;
                if ( debug ) printf(" grfuffi4 %i \n",mu);
                break;
              }
            }
-Line 1351 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1579 
 int OrbitalInfoCore(UInt_t run, TFile *f
        // 10REDNEW
        Int_t errq=0;
-       Int_t azim=0;;
+       Int_t azim=0;
-       for(UInt_t mu = must;mu<RTtime2.size()-1;mu++){
+       Int_t qual=0;
-         if(atime<=RTtime2[mu] && atime>=RTtime1[mu]){
+       Int_t MU=0;
+       for(UInt_t mu = 0;mu<RTtime2.size()-1;mu++){
+         if(atime<RTstart[mu+1] && atime>=RTstart[mu]){
            errq=RTerrq[mu];
            azim=RTazim[mu];
+           qual=RTqual[mu];
+           MU=mu;
+           break;
          }
        }
        orbitalinfo->errq = errq;
        orbitalinfo->azim = azim;
+       orbitalinfo->rtqual=qual;
        orbitalinfo->qkind = 0;
        if ( debug ) printf(" coord done \n");
-Line 1406 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1640 
 int OrbitalInfoCore(UInt_t run, TFile *f
          orbitalinfo->cutoffsvl = 14.295 / (xl*xl); //
          if(debug)cout << "L = " << xl << "\tM = " << dimo << "\tvertical cutoff:  "<< orbitalinfo->cutoffsvl << endl;
-         /*
-           ---------- Forwarded message ----------
+ //           ---------- Forwarded message ----------
-           Date: Wed, 09 May 2012 12:16:47 +0200
+ //           Date: Wed, 09 May 2012 12:16:47 +0200
-           From: Alessandro Bruno <alessandro.bruno@ba.infn.it>
+ //           From: Alessandro Bruno <alessandro.bruno@ba.infn.it>
-           To: Mirko Boezio <mirko.boezio@ts.infn.it>
+ //           To: Mirko Boezio <mirko.boezio@ts.infn.it>
-           Cc: Francesco S. Cafagna <Francesco.Cafagna@ba.infn.it>
+ //           Cc: Francesco S. Cafagna <Francesco.Cafagna@ba.infn.it>
-           Subject: St�rmer vertical cutoff
+ //           Subject: St�rmer vertical cutoff
-           Ciao Mirko,
+ //           Ciao Mirko,
-           volevo segnalarti che il valore dello St�rmer vertical cutoff nel Level2 �
+ //           volevo segnalarti che il valore dello St�rmer vertical cutoff nel Level2 �
-           sovrastimato di circa il 4%.
+ //           sovrastimato di circa il 4%.
-           Dopo un'approfondita analisi con l'IGRF-05 abbiamo ricavano un valore pari
+ //           Dopo un'approfondita analisi con l'IGRF-05 abbiamo ricavano un valore pari
-           a: 14.295 / L^2 anzich� 14.9 / L^2, valore obsoleto in quanto riferito agli
+ //           a: 14.295 / L^2 anzich� 14.9 / L^2, valore obsoleto in quanto riferito agli
-           anni '50.
+ //           anni '50.
-         */
+ //
          //14.9/(xl*xl);
          orbitalinfo->igrf_icode = icode;
          //
-Line 1437 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1671 
 int OrbitalInfoCore(UInt_t run, TFile *f
          Float_t By = orbitalinfo->Beast;
          Float_t Bz = orbitalinfo->Bnorth;
-         TMatrixD Qiji(3,3);
+ //      TMatrixD Qiji(3,3);
          TMatrixD Qij = PO->QuatoECI(orbitalinfo->q0,orbitalinfo->q1,orbitalinfo->q2,orbitalinfo->q3);
          TMatrixD Dij = PO->ECItoGEO(Qij,orbitalinfo->absTime,orbitalinfo->lat,orbitalinfo->lon);
  //10REDNEW
-         /* If initial orientation data have reason to be inaccurate */
+         // If initial orientation data have reason to be inaccurate
-         Double_t tg = 0;
+        Float_t tg = 0.00;
-         cout<<modf(orbitalinfo->TimeGap,&tg)<<endl;
+        Float_t tmptg;
+        if(MU!=0){
  //      if(orbitalinfo->TimeGap>0 && errq==0 && azim==0){               // 10RED CHECK  (comparison between three metod of recovering orientation)
-         if(((orbitalinfo->TimeGap>60.0 && TMath::Abs(orbitalinfo->etha)>0.5) || errq!=0 || modf(orbitalinfo->TimeGap,&tg)*1000>700 || modf(orbitalinfo->TimeGap,&tg)*1000==0.0 ) && azim==0){           //Standard condition to use this;               One of these two cases should be commented
+        if((atime>=RTstart[MU] && atime<RTstart[MU+1] && RTbank1[MU]==0 && RTbank2[MU]==0 && TMath::Abs(orbitalinfo->etha)>0.1) || ((RTbank1[MU]!=0 || RTbank2[MU]!=0) && atime>=RTstart[MU] && atime<RTstart[MU+1] && azim==0 && (errq!=0 || orbitalinfo->TimeGap>10.0 || ((modf(orbitalinfo->TimeGap,&tmptg)*1000>10 || modf(orbitalinfo->TimeGap,&tmptg)*1000==0.0) && orbitalinfo->TimeGap>2.0)))){
-         /*  found in Rotation Table this data for this time interval*/
+         //found in Rotation Table this data for this time interval
          if(atime<RTtime1[0])
            orbitalinfo->azim = 5;        //means that RotationTable no started yet
         else{
-           for(UInt_t mu = must;mu<RTtime2.size()-1;mu++){
-             if(atime<=RTtime2[mu] && atime>=RTtime1[mu]){
                  // search for angle betwean velosity and direction to north in tangential to Earth surfase plane in satellite position
+               Double_t bank=RTstart[MU];
                Double_t tlat=orbitalinfo->lat;
- /*            Double_t phint=(163.7-0.0002387*tlat-0.005802*tlat*tlat-0.005802e-7*tlat*tlat*tlat-1.776e-6*tlat*tlat*tlat*tlat+1.395e-10*tlat*tlat*tlat*tlat*tlat);
-               Double_t phin=TMath::Abs(90.0*(1+diro)-phint);
-               Double_t phi=TMath::Abs(90.0*(1-diro)-TMath::RadToDeg()*atan(TMath::Abs(tan(TMath::DegToRad()*phin))/sqrt(1+pow(tan(TMath::DegToRad()*tlat),2))));
-                 //Get vectors of Satellite reference frame axis in GEO in satndard case (No rotations, all Euler angles equals to 0)
-               TVector3 XDij(0,sin(TMath::DegToRad()*phi),cos(TMath::DegToRad()*phi));
-               TVector3 YDij(1,0,0);
-               TVector3 ZDij(0,sin(TMath::DegToRad()*(phi+90)),cos(TMath::DegToRad()*(phi+90.0)));
-                 //Get Vectors to rotate about
-               TVector3 B1 = V;
-               B1.RotateZ(-lon*TMath::DegToRad());
-               B1.RotateY(lat*TMath::DegToRad());
-               Float_t elipangle=TMath::ACos((pow(B1.Y(),2)+pow(B1.Z(),2))/B1.Mag()/sqrt(pow(B1.Y(),2)+pow(B1.Z(),2)));
-               TVector3 Tre(0,B1.Y(),B1.Z());
-               if(B1.X()<0) elipangle=-elipangle;
-               TVector3 Vperp=B1;                // axis to rotate around initial Dij on ellip and spitch angles
-               Vperp.RotateX(TMath::Pi()/2.);
-               Vperp.SetX(0);
- */            Double_t kar=(RTbank2[mu]-RTbank1[mu])/(RTtime2[mu]-RTtime1[mu]);
-               Double_t bak=RTbank1[mu]-kar*RTtime1[mu];
-               Double_t bank=kar*atime+bak;
-               Float_t spitch = 0.00001;  // temprary not zero to avoid problem with tranzition from Euler angles to orientation matrix
-                 //Estimations of pitch angle of satellite
+               tg=modf(orbitalinfo->TimeGap,&tg)*1000;
-               if(TMath::Abs(bank)>0.7){
-                  Float_t spitch1=TMath::DegToRad()*0.7*RTdir1[mu];
+               if(atime>=RTpluto1[MU] && atime<=RTpluto2[MU]){
-                  Float_t spitch2=TMath::DegToRad()*0.7*RTdir2[mu];
+                 Double_t kar=(RTbank2[MU]-RTbank1[MU])/(RTtime2[MU]-RTtime1[MU]);
-                  Float_t kva=(spitch2-spitch1)/(RTtime2[mu]-RTtime1[mu]);
+                 Double_t bak=RTbank1[MU]-kar*RTtime1[MU];
-                  Float_t bva=spitch1-kva*RTtime1[mu];
+                 bank=kar*atime+bak;
-                  spitch=kva*atime+bva;
-               }
- /*            //spitch=0.0;
-               //Rotations future Dij matrix on ellip and spitch angles
-               XDij.Rotate(-elipangle-spitch,Vperp);
-               YDij.Rotate(-elipangle-spitch,Vperp);
-               ZDij.Rotate(-elipangle-spitch,Vperp);
-                 //Rotation on bank angle;
-               if(TMath::Abs(bank)>0.5){
-                  XDij.Rotate(TMath::DegToRad()*bank,B1);
-                  YDij.Rotate(TMath::DegToRad()*bank,B1);
-                  ZDij.Rotate(TMath::DegToRad()*bank,B1);
                }
-               Dij(0,0)=XDij.X(); Dij(1,0)=XDij.Y(); Dij(2,0)=XDij.Z();
+               if(atime>=RTstart[MU] && atime<RTpluto1[MU]){
-               Dij(0,1)=YDij.X(); Dij(1,1)=YDij.Y(); Dij(2,1)=YDij.Z();
+                  Double_t s_dBdt2=(RTbpluto1[MU]-RTbank1[MU])/(Int_t)(RTpluto1[MU]-RTstart[MU]);
-               Dij(0,2)=ZDij.X(); Dij(1,2)=ZDij.Y(); Dij(2,2)=ZDij.Z();
+                  Double_t s_t2=((Double_t)RTpluto1[MU]+(Double_t)RTstart[MU])/2. - RTstart[MU];
- */
+                  Double_t s_t1=RTstart[MU]-RTstart[MU];
-               //Calculate Yaw angle accordingly with fit, see picture FitYaw.jpg
+                  Double_t s_k=s_dBdt2/(s_t2-s_t1);
-               Double_t yaw=0.00001;  // temprary not zero to avoid problem with tranzition from Euler angles to orientation matrix
+                  Double_t s_b=-s_k*s_t1;
-               if(TMath::Abs(tlat)<70)
+                  Double_t s_t3=RTpluto1[MU]-RTstart[MU];
-                     yaw = -3.7e-8*tlat*tlat*tlat*tlat + 1.4e-7*tlat*tlat*tlat - 0.0005*tlat*tlat - 0.00025*tlat + 3.6;
+                  Double_t s_b3=RTbpluto1[MU];
-               yaw = diro*yaw;   //because should be different sign for ascending and descending orbits!
+                  Double_t s_c=s_b3-0.5*s_k*s_t3*s_t3 -s_b*s_t3;
+                  bank=0.5*s_k*(atime-RTstart[MU])*(atime-RTstart[MU]) + s_b*(atime-RTstart[MU]) + s_c;
-               if(TMath::Abs(bank)>0.5 && TMath::Abs(yaw-orbitalinfo->phi)<3.0) yaw=orbitalinfo->phi;
+              }
+               if(atime>RTpluto2[MU] && atime<=RTstart[MU+1]){
- //            Qiji = PO->EulertoEci(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,bank,yaw,spitch);             // 10RED CHECK
+                  Double_t s_dBdt2=(RTbpluto2[MU] - RTbank2[MU])/(Int_t)(RTpluto2[MU]-RTstart[MU+1]);
-               Qij = PO->EulertoEci(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,bank,yaw,spitch);              // STANDARD
+                  Double_t s_t2=((Double_t)RTpluto2[MU]+(Double_t)RTstart[MU+1])/2. - RTstart[MU];
-               orbitalinfo->qkind = 1;
+                  Double_t s_t1=RTstart[MU+1]-RTstart[MU];
+                  Double_t s_k=s_dBdt2/(s_t2-s_t1);
+                  Double_t s_b=-s_k*s_t1;
+                  Double_t s_t3=RTpluto2[MU]-RTstart[MU];
+                  Double_t s_b3=RTbpluto2[MU];
+                  Double_t s_c=s_b3-0.5*s_k*s_t3*s_t3 -s_b*s_t3;
+                bank=0.5*s_k*(atime-RTstart[MU])*(atime-RTstart[MU]) + s_b*(atime-RTstart[MU]) + s_c;
+              }
+               if(TMath::Abs(orbitalinfo->etha-bank)>0.1){
+                 orbitalinfo->etha=bank;
+                 Double_t spitch = 0.00001;  // temprary not zero to avoid problem with tranzition from Euler angles to orientation matrix
-               break;
+                 //Estimations of pitch angle of satellite
-             }
+                 if(TMath::Abs(bank)>0.7){
-           }     // enf of  loop for(UInt_t mu = must;mu<RTtime2.size()-1;mu++){
+                    Float_t spitch1=TMath::DegToRad()*0.7*diro;//RTdir1[MU];
+                    Float_t spitch2=TMath::DegToRad()*0.7*diro;//RTdir2[MU];
+                    Float_t kva=(spitch2-spitch1)/(RTtime2[MU]-RTtime1[MU]);
+                    Float_t bva=spitch1-kva*RTtime1[MU];
+                    spitch=kva*atime+bva;
+                 }
+                 //Calculate Yaw angle accordingly with fit, see picture FitYaw.jpg
+                 Double_t yaw=0.00001;  // temprary not zero to avoid problem with tranzition from Euler angles to orientation matrix
+                 if(TMath::Abs(tlat)<70)
+                   yaw = -3.7e-8*tlat*tlat*tlat*tlat + 1.4e-7*tlat*tlat*tlat - 0.0005*tlat*tlat - 0.00025*tlat + 3.6;
+                 yaw = diro*yaw; //because should be different sign for ascending and descending orbits!
+                 orbitalinfo->phi=yaw;
+                 if(TMath::Abs(bank)>0.5 && TMath::Abs(yaw-orbitalinfo->phi)<3.0) yaw=orbitalinfo->phi;
+ //              Qiji = PO->EulertoEci(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,bank,yaw,spitch);           // 10RED CHECK
+                 Qij = PO->EulertoEci(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,bank,yaw,spitch);            // STANDARD
+                 orbitalinfo->qkind = 1;
+              }
            //Qij = PO->GEOtoECI(Dij,orbitalinfo->absTime,orbitalinfo->lat,orbitalinfo->lon); // to convert from Dij to Qij
          } // end of if(atime<RTtime1[0]
-         } // end of f(((orbitalinfo->TimeGap>60.0 && TMath...
+         } // end of (((orbitalinfo->TimeGap>60.0 && TMath...
+        } // end of MU~=0
          TMatrixD qij = PO->ColPermutation(Qij);
          TMatrixD Fij = PO->ECItoGreenwich(Qij,orbitalinfo->absTime);
-Line 1553 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1781 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //      orbitalinfo->pamBangle = (Float_t)PO->GetPitchAngle(A1,A2,A3,Bx,By,Bz);                 // Angle between Pamela's main axiz and B
          //
          if ( debug ) printf(" matrixes done  \n");
-         if ( !standalone && tof->ntrk() > 0 ){
+         if ( !standalone ){
            if ( debug ) printf(" !standalone \n");
            //
+           // Standard tracking algorithm
+           //
            Int_t nn = 0;
+           if ( verbose ) printf(" standard tracking \n");
            for(Int_t nt=0; nt < tof->ntrk(); nt++){
              //
              ToFTrkVar *ptt = tof->GetToFTrkVar(nt);
-Line 1571 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1802 
 int OrbitalInfoCore(UInt_t run, TFile *f
                TrkTrack *mytrack = trke->GetStoredTrack(ptt->trkseqno);
                Float_t rig=1/mytrack->GetDeflection();
                Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
-               //              Double_t MyAzim = TMath::RadToDeg()*atan(TMath::Abs(E22y-E11y)/TMath::Abs(E22x-E11x));
+               //
-               //              if(E22x-E11x>=0 && E22y-E11y <0) MyAzim =  360. - MyAzim;
-               //              if(E22x-E11x>=0 && E22y-E11y >=0) MyAzim = MyAzim;
-               //              if(E22x-E11x<0 && E22y-E11y >0) MyAzim = 180. - MyAzim;
-               //              if(E22x-E11x<0 && E22y-E11y <0) MyAzim = 180. + MyAzim;
                Px = (E22x-E11x)/norm;
                Py = (E22y-E11y)/norm;
                Pz = (E22z-E11z)/norm;
-Line 1592 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1819 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
                //
-                 // SunPosition in instrumental reference frame
+               // SunPosition in instrumental reference frame
                TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
                TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
                t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
                t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
                //
                //
-               //Double_t omega = PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),cos(orbitalinfo->lon+TMath::Pi()/2)-sin(orbitalinfo->lon+TMath::Pi()/2),cos(orbitalinfo->lon+TMath::Pi()/2)+sin(orbitalinfo->lon+TMath::Pi()/2),1);
                Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
                TVector3 Bxy(0,By,Bz);
                TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
                Double_t dzeta=Bxy.Angle(Exy);
                if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+               if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
-                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+               // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
-                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
                if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
-               else t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+               else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
                if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
-               //t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow((1+sqrt(1-pow(orbitalinfo->L,-3/2)*cos(omega))),2));
                //
                if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
                if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
-Line 1629 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1852 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->Clear();
                //
-             };
+             }
              //
-           };
+           } // end standard tracking algorithm
+           //
+           // Code for extended tracking algorithm:
+           //
+           if ( hasNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasNucleiTrk \n");
+             for(Int_t nt=0; nt < tcNucleiTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got1\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcNucleiTof->At(nt));
+               if (verbose) cout<<" tcNucleiTof->GetEntries() = "<<tcNucleiTof->GetEntries()<<"\tptt->trkseqno = "<<ptt->trkseqno<<endl;
+               Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
+               Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
+               Double_t E11z = zin[0];
+               Double_t E22x = ptt->xtr_tof[3];//tr->x[3];
+               Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
+               Double_t E22z = zin[3];
+               if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+                 TrkTrack *mytrack = (TrkTrack*)(tcNucleiTrk->At(ptt->trkseqno));
+                 if ( verbose ) printf(" got tcNucleiTrk \n");
+                 Float_t rig=1/mytrack->GetDeflection();
+                 Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
+                 //
+                 Px = (E22x-E11x)/norm;
+                 Py = (E22y-E11y)/norm;
+                 Pz = (E22z-E11z)/norm;
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 TMatrixD Eij = PO->PamelatoGEO(Iij,Px,Py,Pz);
+                 t_orb->Eij.ResizeTo(Eij);
+                 t_orb->Eij = Eij;
+                 //
+                 TMatrixD Sij = PO->PamelatoGEO(Gij,Px,Py,Pz);
+                 t_orb->Sij.ResizeTo(Sij);
+                 t_orb->Sij = Sij;
+                 //
+                 t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
+                 //
+                 // SunPosition in instrumental reference frame
+                 TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+                 TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+                 t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+                 t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
+                 //
+                 //
+                 Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+                 TVector3 Bxy(0,By,Bz);
+                 TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+                 Double_t dzeta=Bxy.Angle(Exy);
+                 if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+                 if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
+                 //
+                 if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
+                 if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+                 if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+                 if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
+                 //
+                 if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
+                 //
+                 TClonesArray &tt1 = *torbNucleiTrk;
+                 new(tt1[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           } // end standard tracking algorithm: nuclei
+           if ( hasExtNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtNucleiTrk \n");
+             for(Int_t nt=0; nt < tcExtNucleiTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got2\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtNucleiTof->At(nt));
+               if (verbose) cout<<" tcExtNucleiTof->GetEntries() = "<<tcExtNucleiTof->GetEntries()<<"\tptt->trkseqno = "<<ptt->trkseqno<<endl;
+               Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
+               Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
+               Double_t E11z = zin[0];
+               Double_t E22x = ptt->xtr_tof[3];//tr->x[3];
+               Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
+               Double_t E22z = zin[3];
+               if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+                 ExtTrack *mytrack = (ExtTrack*)(tcExtNucleiTrk->At(ptt->trkseqno));
+                 if ( verbose ) printf(" got tcExtNucleiTrk \n");
+                 Float_t rig=1/mytrack->GetDeflection();
+                 Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
+                 //
+                 Px = (E22x-E11x)/norm;
+                 Py = (E22y-E11y)/norm;
+                 Pz = (E22z-E11z)/norm;
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 TMatrixD Eij = PO->PamelatoGEO(Iij,Px,Py,Pz);
+                 t_orb->Eij.ResizeTo(Eij);
+                 t_orb->Eij = Eij;
+                 //
+                 TMatrixD Sij = PO->PamelatoGEO(Gij,Px,Py,Pz);
+                 t_orb->Sij.ResizeTo(Sij);
+                 t_orb->Sij = Sij;
+                 //
+                 t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
+                 //
+                 // SunPosition in instrumental reference frame
+                 TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+                 TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+                 t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+                 t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
+                 //
+                 //
+                 Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+                 TVector3 Bxy(0,By,Bz);
+                 TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+                 Double_t dzeta=Bxy.Angle(Exy);
+                 if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+                 if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
+                 //
+                 if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
+                 if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+                 if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+                 if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
+                 //
+                 if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
+                 //
+                 TClonesArray &tt2 = *torbExtNucleiTrk;
+                 new(tt2[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           } // end standard tracking algorithm: nuclei extended
+          if ( hasExtTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtTrk \n");
+             for(Int_t nt=0; nt < tcExtTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got3\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtTof->At(nt));
+               if (verbose) cout<<" tcExtTof->GetEntries() = "<<tcExtTof->GetEntries()<<"\tptt->trkseqno = "<<ptt->trkseqno<<endl;
+               Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
+               Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
+               Double_t E11z = zin[0];
+               Double_t E22x = ptt->xtr_tof[3];//tr->x[3];
+               Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
+               Double_t E22z = zin[3];
+               if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+                 ExtTrack *mytrack = (ExtTrack*)(tcExtTrk->At(ptt->trkseqno));
+                 if ( verbose ) printf(" got tcExtTrk \n");
+                 Float_t rig=1/mytrack->GetDeflection();
+                 Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
+                 //
+                 Px = (E22x-E11x)/norm;
+                 Py = (E22y-E11y)/norm;
+                 Pz = (E22z-E11z)/norm;
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 TMatrixD Eij = PO->PamelatoGEO(Iij,Px,Py,Pz);
+                 t_orb->Eij.ResizeTo(Eij);
+                 t_orb->Eij = Eij;
+                 //
+                 TMatrixD Sij = PO->PamelatoGEO(Gij,Px,Py,Pz);
+                 t_orb->Sij.ResizeTo(Sij);
+                 t_orb->Sij = Sij;
+                 //
+                 t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
+                 //
+                 // SunPosition in instrumental reference frame
+                 TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+                 TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+                 t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+                 t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
+                 //
+                 //
+                 Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+                 TVector3 Bxy(0,By,Bz);
+                 TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+                 Double_t dzeta=Bxy.Angle(Exy);
+                 if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+                 if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
+                 //
+                 if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
+                 if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+                 if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+                 if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
+                 //
+                 if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
+                 //
+                 TClonesArray &tt3 = *torbExtTrk;
+                 new(tt3[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           } // end standard tracking algorithm: extended
          } else {
            if ( debug ) printf(" mmm... mode %u standalone  \n",orbitalinfo->mode);
          }
          //
-       } else {
+       } else { // HERE IT MISS ALL CODE FOR EXTENDED TRACKING!
-         if ( !standalone && tof->ntrk() > 0 ){
+         if ( !standalone ){
            //
+           if ( verbose ) printf(" no orb info for tracks \n");
            Int_t nn = 0;
            for(Int_t nt=0; nt < tof->ntrk(); nt++){
              //
-Line 1664 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2115 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->Clear();
                //
-             };
+             }
              //
-           };
+           }
-         };
+           //
-       };        // if( orbitalinfo->TimeGap>0){
+           // Code for extended tracking algorithm:
+           //
+           if ( hasNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasNucleiTrk \n");
+             for(Int_t nt=0; nt < tcNucleiTof->GetEntries() ; nt++){
+               //
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcNucleiTof->At(nt));
+               if ( ptt->trkseqno != -1  ){
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 t_orb->Eij = 0;
+                 //
+                 t_orb->Sij = 0;
+                 //
+                 t_orb->pitch = -1000.;
+                 //
+                 t_orb->sunangle = -1000.;
+                 //
+                 t_orb->sunmagangle = -1000;
+                 //
+                 t_orb->cutoff = -1000.;
+                 //
+                 TClonesArray &tz1 = *torbNucleiTrk;
+                 new(tz1[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           }
+           if ( hasExtNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtNucleiTrk \n");
+             for(Int_t nt=0; nt < tcExtNucleiTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got2\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtNucleiTof->At(nt));
+               if ( ptt->trkseqno != -1  ){
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 t_orb->Eij = 0;
+                 //
+                 t_orb->Sij = 0;
+                 //
+                 t_orb->pitch = -1000.;
+                 //
+                 t_orb->sunangle = -1000.;
+                 //
+                 t_orb->sunmagangle = -1000;
+                 //
+                 t_orb->cutoff = -1000.;
+                 //
+                 TClonesArray &tz2 = *torbExtNucleiTrk;
+                 new(tz2[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           }
+           if ( hasExtTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtTrk \n");
+             for(Int_t nt=0; nt < tcExtTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got3\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtTof->At(nt));
+               if ( ptt->trkseqno != -1  ){
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 t_orb->Eij = 0;
+                 //
+                 t_orb->Sij = 0;
+                 //
+                 t_orb->pitch = -1000.;
+                 //
+                 t_orb->sunangle = -1000.;
+                 //
+                 t_orb->sunmagangle = -1000;
+                 //
+                 t_orb->cutoff = -1000.;
+                 //
+                 TClonesArray &tz3 = *torbExtNucleiTrk;
+                 new(tz3[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           }
+         }
+       } // if( orbitalinfo->TimeGap>0){
        //
        // Fill the class
        //
        OrbitalInfotr->Fill();
        //
+       //      tor.Clear("C"); // memory leak?
+       tor.Delete(); // memory leak?
        delete t_orb;
        //
-     }; // loop over the events in the run
+       //      printf(" q0 size %i q0 capacity %i \n",(int)q0.size(),(int)q0.capacity());
+     } // loop over the events in the run
      //
      // Here you may want to clear some variables before processing another run
      //
+     //    OrbitalInfotr->FlushBaskets();
      if ( verbose ) printf(" Clear before new run \n");
      delete dbtime;
-Line 1696 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2255 
 int OrbitalInfoCore(UInt_t run, TFile *f
      if ( verbose ) printf(" Clear before new run4 \n");
      if ( RYPang_lower ) delete RYPang_lower;
-     if ( l0tr ) l0tr->Delete();
+     if ( l0tr ){
+       if ( verbose ) printf(" delete l0tr\n");
+       l0tr->Delete();
+       l0tr = 0;
+     }
+     //    if ( l0head ){
+     //      printf(" delete l0head\n");
+     //  l0head->Reset();
+     //  delete l0head;
+     //  printf(" delete l0head done\n");
+     //  l0head = 0;
+     // }
+     if (eh) {
+       if ( verbose ) printf(" delete eh\n");
+       delete eh;
+       eh = 0;
+     }
+     if ( verbose ) printf(" close file \n");
+     if ( l0File ) l0File->Close("R");
      if ( verbose ) printf(" End run \n");
-   }; // process all the runs
+     q0.clear();
+     q1.clear();
+     q2.clear();
+     q3.clear();
+     qtime.clear();
+     qPitch.clear();
+     qRoll.clear();
+     qYaw.clear();
+     qmode.clear();
+     if (ch){
+       if ( verbose ) printf(" delete ch\n");
+       ch->Delete();
+       ch = 0;
+     }
+   } // process all the runs    <===
+   if ( debug ){
+     printf("AFTER LOOP ON RUNs\n");
+     gObjectTable->Print();
+   }
+   //
    if (verbose) printf("\n Finished processing data \n");
    //
   closeandexit:
-Line 1723 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2320 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          // copy orbitalinfoclone to OrbitalInfo
          //
-         orbitalinfo->Clear();
+         //      orbitalinfo->Clear();
          //
          memcpy(&orbitalinfo,&orbitalinfoclone,sizeof(orbitalinfoclone));
          //
-Line 1768 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2365 
 int OrbitalInfoCore(UInt_t run, TFile *f
    if ( gltle ) delete gltle;
    if ( glparam ) delete glparam;
    if ( glparam2 ) delete glparam2;
-   if ( glparam3 ) delete glparam3;
    if (verbose) printf("\n Exiting3...\n");
    if ( glroot ) delete glroot;
    if (verbose) printf("\n Exiting4...\n");
    if ( runinfo ) runinfo->Close();
    if ( runinfo ) delete runinfo;
+   if ( tcNucleiTrk ){
+     tcNucleiTrk->Delete();
+     delete tcNucleiTrk;
+     tcNucleiTrk = NULL;
+   }
+   if ( tcExtNucleiTrk ){
+     tcExtNucleiTrk->Delete();
+     delete tcExtNucleiTrk;
+     tcExtNucleiTrk = NULL;
+   }
+   if ( tcExtTrk ){
+     tcExtTrk->Delete();
+     delete tcExtTrk;
+     tcExtTrk = NULL;
+   }
+   if ( tcNucleiTof ){
+     tcNucleiTof->Delete();
+     delete tcNucleiTof;
+     tcNucleiTof = NULL;
+   }
+   if ( tcExtNucleiTof ){
+     tcExtNucleiTof->Delete();
+     delete tcExtNucleiTof;
+     tcExtNucleiTof = NULL;
+   }
+   if ( tcExtTof ){
+     tcExtTof->Delete();
+     delete tcExtTof;
+     tcExtTrk = NULL;
+   }
    if ( tof ) delete tof;
    if ( trke ) delete trke;
-Line 1788 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2417 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    if ( debug )  file->ls();
    //
+   if ( debug ){
+     printf("BEFORE EXITING\n");
+     gObjectTable->Print();
+   }
    if(code < 0)  throw code;
    return(code);
  }
-Line 1894 
 void inclresize(vector<Double_t>& t,vect
+Line 2527 
 void inclresize(vector<Double_t>& t,vect
  // geomagnetic calculation staff
- //void GM_ScanIGRF(TString PATH, GMtype_Data *G0, GMtype_Data *G1, GMtype_Data *H1)
  void GM_ScanIGRF(TSQLServer *dbc, GMtype_Data *G0, GMtype_Data *G1, GMtype_Data *H1)
  {
    GL_PARAM *glp = new GL_PARAM();
-Line 1942 
 void GM_ScanIGRF(TSQLServer *dbc, GMtype
+Line 2574 
 void GM_ScanIGRF(TSQLServer *dbc, GMtype
          H1->element[23] = temp * 5 + H1->element[22];
          H1->element[24] = temp * 5 + H1->element[23];
    if ( glp ) delete glp;
+   /*
+   printf("############################## SCAN IGRF ######################################\n");
+   printf("       G0      G1     H1\n");
+   printf(" size  %10i %10i %10i \n",G0->size,G1->size,H1->size);
+   for ( i = 0; i < 30; i++){
+     printf("%5i  %10.2f %10.2f %10.2f \n",i,G0->element[i],G1->element[i],H1->element[i]);
+   }
+   printf("###############################################################################\n");
+   */
+ } /*GM_ScanIGRF*/
+ void GM_SetIGRF(Int_t isSecular, TString ifile1, TString ifile2, GMtype_Data *G0, GMtype_Data *G1, GMtype_Data *H1)
+ {
+   /*This function scans inputs G0, G1, and H1 of the IGRF table into 3 data arrays*/
+   int i;
+   double temp,temp2;
+   int it1,it2;
+   char buffer[200];
+   FILE *IGRF;
+   G0->size = 2;
+   G1->size = 2;
+   H1->size = 2;
+   for( i = 0; i < 30; i++){
+     G0->element[i] = 0.;
+     G1->element[i] = 0.;
+     H1->element[i] = 0.;
+   }
+   IGRF = fopen(ifile1.Data(), "r");
+   for( i = 0; i < 2; i++){
+     fgets(buffer, 200, IGRF);
+   }
+   fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G0->element[0],&temp);
+   fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G1->element[0],&H1->element[0]);
+   fclose(IGRF);
+   IGRF = fopen(ifile2.Data(), "r");
+   for( i = 0; i < 2; i++){
+     fgets(buffer, 200, IGRF);
+   }
+   if ( isSecular ){
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2,&temp,&temp2);
+     G0->element[1] = temp * 5. + G0->element[0];
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2,&temp,&temp2);
+     G1->element[1] = temp * 5. + G1->element[0];
+     H1->element[1] = temp2 * 5. + H1->element[0];
+   } else {
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G0->element[1],&temp);
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G1->element[1],&H1->element[1]);
+   }
+   fclose(IGRF);
+   /*
+   printf("############################## SCAN IGRF ######################################\n");
+   printf("       G0      G1     H1\n");
+   printf(" size  %10i %10i %10i \n",G0->size,G1->size,H1->size);
+   for ( i = 0; i < 30; i++){
+     printf("%5i  %10.2f %10.2f %10.2f \n",i,G0->element[i],G1->element[i],H1->element[i]);
+   }
+   printf("###############################################################################\n");
+   */
  } /*GM_ScanIGRF*/
  void GM_SetEllipsoid(GMtype_Ellipsoid *Ellip)
-Line 2031 
 void GM_TimeAdjustCoefs(Float_t year, Fl
+Line 2727 
 void GM_TimeAdjustCoefs(Float_t year, Fl
          int index;
          double x;
          index = (year - GM_STARTYEAR) / 5;
-         x = (jyear - GM_STARTYEAR) / 5;
+         x = (jyear - GM_STARTYEAR) / 5.;
          Model->g0 = GM_LinearInterpolation(index, index+1, g0d.element[index], g0d.element[index+1], x);
          Model->g1 = GM_LinearInterpolation(index, index+1, g1d.element[index], g1d.element[index+1], x);
          Model->h1 = GM_LinearInterpolation(index, index+1, h1d.element[index], h1d.element[index+1], x);
-Line 2042 
 double GM_LinearInterpolation(double x1,
+Line 2738 
 double GM_LinearInterpolation(double x1,
          /*This function takes a linear interpolation between two given points for x*/
          double weight, y;
          weight  = (x - x1) / (x2 - x1);
-         y = y1 * (1 - weight) + y2 * weight;
+         y = y1 * (1. - weight) + y2 * weight;
+         //        printf(" x1 %f x2 %f y1 %f y2 %f x %f ==> y %f \n",x1,x2,y1,y2,x,y);
          return y;
  }/*GM_LinearInterpolation*/

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