/[PAMELA software]/DarthVader/OrbitalInfo/src/OrbitalInfoCore.cpp

Diff of /DarthVader/OrbitalInfo/src/OrbitalInfoCore.cpp

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-revision 1.67 by emocchiutti,
Tue Feb 25 15:41:48 2014 UTC
+revision 1.82 by malakhov,
Tue Mar  3 10:58:13 2015 UTC
 Line 26
  #include <TSQLServer.h>
  #include <TSQLRow.h>
  #include <TSQLResult.h>
+ #include <TObjectTable.h>
  //
  // RunInfo header
  //
-Line 48
+Line 49
  #include <OrbitalInfoCore.h>
  #include <InclinationInfo.h>
+ //
+ // Tracker and ToF classes headers and definitions
+ //
+ #include <ToFLevel2.h>
+ #include <TrkLevel2.h>
+ #include <ExtTrack.h> // new tracking code
  using namespace std;
-Line 55 
 using namespace std;
+Line 62 
 using namespace std;
  // CORE ROUTINE
  //
  //
  int OrbitalInfoCore(UInt_t run, TFile *file, GL_TABLES *glt, Int_t OrbitalInfoargc, char *OrbitalInfoargv[]){
    //
    Int_t i = 0;
    TString host = glt->CGetHost();
-Line 65 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 72 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    stringstream myquery;
    myquery.str("");
-   myquery << "SET time_zone='+0:00'";
+   myquery << "SET time_zone='+0:00';";
    delete dbc->Query(myquery.str().c_str());
+   delete dbc->Query("SET sql_mode = 'NO_UNSIGNED_SUBTRACTION';");
    //
    TString processFolder = Form("OrbitalInfoFolder_%u",run);
    //
-Line 84 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 92 
 int OrbitalInfoCore(UInt_t run, TFile *f
        if ( !strcmp(OrbitalInfoargv[i],"-processFolder") ) {
          if ( OrbitalInfoargc < i+1 ){
            throw -3;
-         };
+         }
          processFolder = (TString)OrbitalInfoargv[i+1];
          i++;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--debug")) || (!strcmp(OrbitalInfoargv[i],"-g")) ) {
          verbose = true;
          debug = true;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--verbose")) || (!strcmp(OrbitalInfoargv[i],"-v")) ) {
          verbose = true;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--standalone")) ) {
          standalone = true;
-       };
+       }
        if ( (!strcmp(OrbitalInfoargv[i],"--calculate-pitch")) ) {
          standalone = false;
-       };
+       }
        i++;
-     };
+     }
-   };
+   }
+   if ( debug ){
+     printf("START\n");
+     gObjectTable->Print();
+   }
    //
    const char* outDir = gSystem->DirName(gSystem->DirName(file->GetPath()));
    //
-Line 183 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 195 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    // IGRF stuff
    //
-   Double_t dimo = 0.0; // dipole moment (computed from dat files) // EM GCC 4.7
+   Float_t dimo = 0.0; // dipole moment (computed from dat files) // EM GCC 4.7
    Float_t bnorth, beast, bdown, babs;
    Float_t xl; // L value
    Float_t icode; // code value for L accuracy (see fortran code)
-Line 236 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 248 
 int OrbitalInfoCore(UInt_t run, TFile *f
    // Initialize fortran routines!!!
    Int_t ltp1 = 0;
    Int_t ltp2 = 0;
-   Int_t ltp3 = 0;
+   GL_PARAM *glparam0 = new GL_PARAM();
-   //  Int_t uno = 1;
-   //  const char *niente = " ";
    GL_PARAM *glparam = new GL_PARAM();
    GL_PARAM *glparam2 = new GL_PARAM();
-   GL_PARAM *glparam3 = new GL_PARAM();
    //
    // Orientation variables. Vitaly
    //
    UInt_t evfrom = 0;
    UInt_t jumped = 0;
    Int_t itr = -1;
-Line 257 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 267 
 int OrbitalInfoCore(UInt_t run, TFile *f
    Double_t Pz = 0;
    TTree *ttof = 0;
    ToFLevel2 *tof = new ToFLevel2();
+   TTree *ttrke = 0;
+   TrkLevel2 *trke = new TrkLevel2();
    OrientationInfo *PO = new OrientationInfo();
    Int_t nz = 6;
    Float_t zin[6];
    Int_t nevtofl2 = 0;
+   Int_t nevtrkl2 = 0;
    if ( verbose ) cout<<"Reading quaternions external file"<<endl;
    cout.setf(ios::fixed,ios::floatfield);
    /******Reading recovered quaternions...*********/
-Line 270 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 283 
 int OrbitalInfoCore(UInt_t run, TFile *f
    vector<Float_t> recq2;
    vector<Float_t> recq3;
    Float_t Norm = 1;
-   Int_t parerror=glparam->Query_GL_PARAM(1,303,dbc); // parameters stored in DB in GL_PRAM table
+   recqtime.reserve(1500000);
-   ifstream in((glparam->PATH+glparam->NAME).Data(),ios::in);
+   recq0.reserve(1500000);
+   recq1.reserve(1500000);
+   recq2.reserve(1500000);
+   recq3.reserve(1500000);
+   vector<UInt_t> RTtime1;
+   vector<UInt_t> RTtime2;
+   vector<Double_t> RTbank1;
+   vector<Double_t> RTbank2;
+   vector<Double_t> RTbpluto1;
+   vector<Double_t> RTbpluto2;
+   vector<Int_t> RTazim;
+   vector<UInt_t> RTstart;
+   vector<UInt_t> RTpluto2;
+   vector<UInt_t> RTpluto1;
+   vector<Int_t> RTerrq;
+   vector<Int_t> RTqual;
+   RTtime1.reserve(200000);
+   RTtime2.reserve(200000);
+   RTbank1.reserve(200000);
+   RTbank2.reserve(200000);
+   RTbpluto1.reserve(200000);
+   RTbpluto2.reserve(200000);
+   RTazim.reserve(200000);
+   RTstart.reserve(200000);
+   RTpluto1.reserve(200000);
+   RTpluto2.reserve(200000);
+   RTerrq.reserve(200000);
+   RTqual.reserve(200000);
+   TClonesArray *tcNucleiTrk = NULL;
+   TClonesArray *tcExtNucleiTrk = NULL;
+   TClonesArray *tcExtTrk = NULL;
+   TClonesArray *tcNucleiTof = NULL;
+   TClonesArray *tcExtNucleiTof = NULL;
+   TClonesArray *tcExtTof = NULL;
+   TClonesArray *torbNucleiTrk = NULL;
+   TClonesArray *torbExtNucleiTrk = NULL;
+   TClonesArray *torbExtTrk = NULL;
+   Bool_t hasNucleiTrk = false;
+   Bool_t hasExtNucleiTrk = false;
+   Bool_t hasExtTrk = false;
+   Bool_t hasNucleiTof = false;
+   Bool_t hasExtNucleiTof = false;
+   Bool_t hasExtTof = false;
+   ifstream in;
+   ifstream an;
+   //  ofstream mc;
+   //  TString gr;
+   Int_t parerror2=0;
+   Int_t parerror=glparam0->Query_GL_PARAM(1,303,dbc); // parameters stored in DB in GL_PRAM table
+   if ( verbose ) cout<<parerror<<"\t"<<(char*)(glparam0->PATH+glparam0->NAME).Data()<<endl;
    if ( parerror<0 ) {
      code = parerror;
      goto closeandexit;
    }
+   in.open((char*)(glparam0->PATH+glparam0->NAME).Data(),ios::in);
    while(!in.eof()){
      recqtime.resize(recqtime.size()+1);
      Int_t sizee = recqtime.size();
-Line 289 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 356 
 int OrbitalInfoCore(UInt_t run, TFile *f
      in>>recq2[sizee-1];
      in>>recq3[sizee-1];
      in>>Norm;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM
+     if(recqtime[sizee-1]>=1160987921.75 && recqtime[sizee-1]<=1160987932.00){
+       cout<<"We found it at start"<<"\t"<<recqtime[sizee-1]<<endl;
+     } */
    }
+   in.close();
    if ( verbose ) cout<<"We have read recovered data"<<endl;
+   if (debug) cout << "size of recovered quaterions data set is " << recqtime.size() << endl;
+   if ( debug )  printf(" RQ size %i RQ capacity %i \n",(int)recqtime.size(),(int)recqtime.capacity());
+   if ( verbose ) cout<<"read Rotation Table"<<endl;
+   parerror2=glparam0->Query_GL_PARAM(1,305,dbc);
+   if ( verbose ) cout<<parerror2<<"\t"<<(char*)(glparam0->PATH+glparam0->NAME).Data()<<endl;
+   if ( parerror2<0 ) {
+     code = parerror;
+     goto closeandexit;
+   }
+   an.open((char*)(glparam0->PATH+glparam0->NAME).Data(),ios::in);
+   while(!an.eof()){
+     RTtime1.resize(RTtime1.size()+1);
+     Int_t sizee = RTtime1.size();
+     RTbank1.resize(sizee+1);
+     RTazim.resize(sizee+1);
+     RTerrq.resize(sizee+1);
+     RTstart.resize(sizee+1);
+     RTpluto1.resize(sizee+1);
+     RTbpluto1.resize(sizee+1);
+     RTqual.resize(sizee+1);
+     an>>RTtime1[sizee-1];
+     an>>RTbank1[sizee-1];
+     an>>RTstart[sizee-1];
+     an>>RTpluto1[sizee-1];
+     an>>RTbpluto1[sizee-1];
+     an>>RTazim[sizee-1];
+     an>>RTerrq[sizee-1];
+     an>>RTqual[sizee-1];
+     if(sizee>1) {
+       RTtime2.resize(sizee+1);
+       RTbank2.resize(sizee+1);
+       RTpluto2.resize(sizee+1);
+       RTbpluto2.resize(sizee+1);
+       RTtime2[sizee-2]=RTtime1[sizee-1];
+       RTpluto2[sizee-2]=RTpluto1[sizee-1];
+       RTbank2[sizee-2]=RTbank1[sizee-1];
+       RTbpluto2[sizee-2]=RTbpluto1[sizee-1];
+     }
+   }
+   an.close();
+   //cout<<"put some number here"<<endl;
+   //Int_t yupi;
+   //cin>>yupi;
+   if ( verbose ) cout<<"We have read Rotation Table"<<endl;
+     //Geomagnetic coordinates calculations staff
+   if ( debug ) printf(" RT size %i RT capacity %i \n",(int)RTtime2.size(),(int)RTtime2.capacity());
+   GMtype_CoordGeodetic location;
+   //  GMtype_CoordDipole GMlocation;
+   GMtype_Ellipsoid Ellip;
+   GMtype_Data G0, G1, H1;
+   //  { // this braces is necessary to avoid jump to label 'closeandexit'  error   // but it is wrong since the variable "igpath" will not exist outside. To overcome the "jump to label 'closeandexit'  error" it is necessary to set the "igpath" before line 276
+   //    TString igpath="/data03/Malakhov/pam9Malakhov/installed10/calib/orb-param/";
+   //  }
+   //cout << G0.element[0] << "\t" << G1.element[0] << "\t" << H1.element[0] << endl;
+   //cout << G0.element[5] << "\t" << G1.element[5] << "\t" << H1.element[5] << endl;
+   GM_SetEllipsoid(&Ellip);
    // IGRF stuff moved inside run loop!
-Line 300 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 437 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    if ( !standalone ){
      //
-     // Does it contain the Tracker tree?
+     // Does it contain the Tracker and ToF trees?
      //
      ttof = (TTree*)file->Get("ToF");
      if ( !ttof ) {
        if ( verbose ) printf(" OrbitalInfo - ERROR: no tof tree\n");
        code = -900;
        goto closeandexit;
-     };
+     }
      ttof->SetBranchAddress("ToFLevel2",&tof);
      nevtofl2 = ttof->GetEntries();
-   };
+     //
+     // Look for extended tracking algorithm
+     //
+     if ( verbose ) printf("Look for extended and nuclei tracking algorithms in ToF\n");
+     // Nuclei tracking algorithm
+     Int_t checkAlgo = 0;
+     tcNucleiTof =  new TClonesArray("ToFTrkVar");
+     checkAlgo = ttof->SetBranchAddress("TrackNuclei",&tcNucleiTof);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Nuclei tracking algorithm ToF branch found! :D \n");
+       hasNucleiTof = true;
+     } else {
+       if ( verbose ) printf(" Nuclei tracking algorithm ToF branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcNucleiTof;
+       tcNucleiTof=NULL; // 10RED reprocessing bug
+     }
+     // Nuclei tracking algorithm using calorimeter points
+     tcExtNucleiTof =  new TClonesArray("ToFTrkVar");
+     checkAlgo = ttof->SetBranchAddress("RecoveredTrackNuclei",&tcExtNucleiTof);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm ToF branch found! :D \n");
+       hasExtNucleiTof = true;
+     } else {
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm ToF branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtNucleiTof;
+       tcExtNucleiTof=NULL; // 10RED reprocessing bug
+     }
+     // Tracking algorithm using calorimeter points
+     tcExtTof =  new TClonesArray("ToFTrkVar");
+     checkAlgo = ttof->SetBranchAddress("RecoveredTrack",&tcExtTof);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered track algorithm ToF branch found! :D \n");
+       hasExtTof = true;
+     } else {
+       if ( verbose ) printf(" Recovered track algorithm ToF branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtTof;
+       tcExtTof=NULL; // 10RED reprocessing bug
+     }
+     ttrke = (TTree*)file->Get("Tracker");
+     if ( !ttrke ) {
+       if ( verbose ) printf(" OrbitalInfo - ERROR: no trk tree\n");
+       code = -903;
+       goto closeandexit;
+     }
+     ttrke->SetBranchAddress("TrkLevel2",&trke);
+     nevtrkl2 = ttrke->GetEntries();
+     //
+     // Look for extended tracking algorithm
+     //
+     if ( verbose ) printf("Look for extended and nuclei tracking algorithms\n");
+     // Nuclei tracking algorithm
+     checkAlgo = 0;
+     tcNucleiTrk =  new TClonesArray("TrkTrack");
+     checkAlgo = ttrke->SetBranchAddress("TrackNuclei",&tcNucleiTrk);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Nuclei tracking algorithm branch found! :D \n");
+       hasNucleiTrk = true;
+     } else {
+       if ( verbose ) printf(" Nuclei tracking algorithm branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcNucleiTrk;
+       tcNucleiTrk=NULL; // 10RED reprocessing bug
+     }
+     // Nuclei tracking algorithm using calorimeter points
+     tcExtNucleiTrk =  new TClonesArray("ExtTrack");
+     checkAlgo = ttrke->SetBranchAddress("RecoveredTrackNuclei",&tcExtNucleiTrk);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm branch found! :D \n");
+       hasExtNucleiTrk = true;
+     } else {
+       if ( verbose ) printf(" Recovered nuclei tracking algorithm branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtNucleiTrk;
+       tcExtNucleiTrk=NULL; // 10RED reprocessing bug
+     }
+     // Tracking algorithm using calorimeter points
+     tcExtTrk =  new TClonesArray("ExtTrack");
+     checkAlgo = ttrke->SetBranchAddress("RecoveredTrack",&tcExtTrk);
+     if ( !checkAlgo ){
+       if ( verbose ) printf(" Recovered track algorithm branch found! :D \n");
+       hasExtTrk = true;
+     } else {
+       if ( verbose ) printf(" Recovered track algorithm branch not found :( !\n");
+       printf(" ok, this is not a problem (it depends on tracker settings) \n");
+       delete tcExtTrk;
+       tcExtTrk=NULL; // 10RED reprocessing bug
+     }
+     if ( (hasNucleiTrk && !hasNucleiTof) || (!hasNucleiTrk && hasNucleiTof) ||
+          (hasExtNucleiTrk && !hasExtNucleiTof) || (!hasExtNucleiTrk && hasExtNucleiTof) ||
+          (hasExtTrk && !hasExtTof) || (!hasExtTrk && hasExtTof)
+          ){
+       if ( verbose ) printf(" ERROR: Mismatch between tracker and tof tree branches concerning extended tracking algorithm(s)\n");
+       if ( debug ) printf("hasNucleiTrk %i hasExtNucleiTrk %i hasExtTrk %i \n",hasNucleiTrk,hasExtNucleiTrk,hasExtTrk);
+       if ( debug ) printf("hasNucleiTof %i hasExtNucleiTof %i hasExtTof %i \n",hasNucleiTof,hasExtNucleiTof,hasExtTof);
+       throw -901;
+     }
+   }
    //
    // Let's start!
    //
-Line 438 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 679 
 int OrbitalInfoCore(UInt_t run, TFile *f
    orbitalinfo->Set();//ELENA **TEMPORANEO?**
    OrbitalInfotr->Branch("OrbitalInfo","OrbitalInfo",&orbitalinfo);
    //
+   // create new branches for new tracking algorithms
+   //
+   if ( hasNucleiTrk ){
+     torbNucleiTrk = new TClonesArray("OrbitalInfoTrkVar",1);
+     OrbitalInfotr->Branch("TrackNuclei",&torbNucleiTrk);
+   }
+   if ( hasExtNucleiTrk ){
+     torbExtNucleiTrk = new TClonesArray("OrbitalInfoTrkVar",1);
+     OrbitalInfotr->Branch("RecoveredTrackNuclei",&torbExtNucleiTrk);
+   }
+   if ( hasExtTrk ){
+     torbExtTrk = new TClonesArray("OrbitalInfoTrkVar",1);
+     OrbitalInfotr->Branch("RecoveredTrack",&torbExtTrk);
+   }
+   //
    if ( reproc && !reprocall ){
      //
      //  open new file and retrieve also tree informations
-Line 459 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 716 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          // copy orbitalinfoclone to mydec
          //
-         orbitalinfo->Clear();
+         //      orbitalinfo->Clear();
          //
          memcpy(&orbitalinfo,&orbitalinfoclone,sizeof(orbitalinfoclone));
          //
-Line 476 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 733 
 int OrbitalInfoCore(UInt_t run, TFile *f
    // Get the list of run to be processed, if only one run has to be processed the list will contain one entry only.
    //
    runlist = runinfo->GetRunList();
+   if ( debug ){
+     printf("BEFORE LOOP ON RUN\n");
+     gObjectTable->Print();
+   }
    //
    // Loop over the run to be processed
    //
-   for (UInt_t irun=0; irun < numbofrun; irun++){
+   for (UInt_t irun=0; irun < numbofrun; irun++){ //===>
      L_QQ_Q_l_lower = new Quaternions();
      RYPang_lower = new InclinationInfo();
-Line 588 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 849 
 int OrbitalInfoCore(UInt_t run, TFile *f
        goto closeandexit;
      };
-     //
-     // open IGRF files and do it only once if we are processing a full level2 file
-     //
-     if ( reprocall && !igrfloaded ){
-       if ( l0head->GetEntry(runinfo->EV_FROM) > 0 ){
-         igrfloaded = true;
-       //
-       // absolute time of first event of the run (it should not matter a lot)
-       //
-       ph = eh->GetPscuHeader();
-       atime = dbtime->DBabsTime(ph->GetOrbitalTime());
-       parerror=glparam->Query_GL_PARAM(atime-anni5,301,dbc); // parameters stored in DB in GL_PRAM table
-       if ( parerror<0 ) {
-         code = parerror;
-         goto closeandexit;
-       }
-       ltp1 = (Int_t)(glparam->PATH+glparam->NAME).Length();
-       if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam->PATH+glparam->NAME).Data());
-       //
-       parerror=glparam2->Query_GL_PARAM(atime,301,dbc); // parameters stored in DB in GL_PRAM table
-       if ( parerror<0 ) {
-         code = parerror;
-         goto closeandexit;
-       }
-       ltp2 = (Int_t)(glparam2->PATH+glparam2->NAME).Length();
-       if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam2->PATH+glparam2->NAME).Data());
-       //
-       parerror=glparam3->Query_GL_PARAM(atime,302,dbc); // parameters stored in DB in GL_PRAM table
-       if ( parerror<0 ) {
-         code = parerror;
-         goto closeandexit;
-       }
-       ltp3 = (Int_t)(glparam3->PATH+glparam3->NAME).Length();
-       if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam3->PATH+glparam3->NAME).Data());
-       //
-       initize_((char *)(glparam->PATH+glparam->NAME).Data(),&ltp1,(char *)(glparam2->PATH+glparam2->NAME).Data(),&ltp2,(char *)(glparam3->PATH+glparam3->NAME).Data(),&ltp3);
-       //
-       }
-     }
-     //
-     // End IGRF stuff//
-     //
-     //
-     //     TTree *tp = (TTree*)l0File->Get("RunHeader");
-     //     tp->SetBranchAddress("Header", &eH);
-     //     tp->SetBranchAddress("RunHeader", &reh);
-     //     tp->GetEntry(0);
-     //     ph = eH->GetPscuHeader();
-     //     ULong_t TimeSync = reh->LAST_TIME_SYNC_INFO;
-     //     ULong_t ObtSync = reh->OBT_TIME_SYNC;
-     //     if ( debug ) printf(" 1 TimeSync %lu ObtSync %lu DeltaOBT %lu\n",TimeSync,ObtSync,TimeSync-ObtSync);
-     //
      ULong_t TimeSync = (ULong_t)dbtime->GetTimesync();
      ULong_t ObtSync = (ULong_t)(dbtime->GetObt0()/1000);
      ULong_t DeltaOBT = TimeSync - ObtSync;
-Line 678 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 884 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          l0fid[i] = (UInt_t)atoll(Row->GetField(0));
          i--;
+         if (Row){  // memleak!
+           delete Row;
+           Row = 0;
+         }
          Row = pResult->Next();
          //
-       };
+       }
+       if (Row) delete Row;
        pResult->Delete();
-     };
+     }
      //
      myquery.str("");
      myquery << "select ID_ROOT_L0 from GL_RUN where RUNHEADER_TIME>" << runinfo->RUNHEADER_TIME << " group by ID_ROOT_L0 order by RUNHEADER_TIME asc limit 5;";
-Line 700 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 911 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          l0fid[i] = (UInt_t)atoll(Row->GetField(0));
          i++;
+         if (Row){  // memleak!
+           delete Row;
+           Row = 0;
+         }
          Row = pResult->Next();
          //
-       };
+       }
+       if (Row) delete Row;
        pResult->Delete();
-     };
+     }
      //
      i = 0;
      UInt_t previd = 0;
-Line 723 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 939 
 int OrbitalInfoCore(UInt_t run, TFile *f
            if ( debug ) printf(" Using inclination informations from file: %s \n",(((TString)gSystem->ExpandPathName(Row->GetField(0)))+"/"+(TString)Row->GetField(1)).Data());
            ch->Add(((TString)gSystem->ExpandPathName(Row->GetField(0)))+"/"+(TString)Row->GetField(1));
            //
+           if (Row) delete Row;
            pResult->Delete();
-         };
+         }
-       };
+       }
        i++;
-     };
+     }
      //
-     //    l0trm = (TTree*)l0File->Get("Mcmd");
-     //    ch->ls();
      ch->SetBranchAddress("Mcmd",&mcmdev);
-     //    printf(" entries %llu \n", ch->GetEntries());
-     //    l0trm = ch->GetTree();
-     //    neventsm = l0trm->GetEntries();
      neventsm = ch->GetEntries();
      if ( debug ) printf(" entries %u \n", neventsm);
-     //    neventsm = 0;
      //
      if (neventsm == 0){
        if ( debug ) printf("InclinationInfo - WARNING: No quaternions in this File");
-       //      l0File->Close();
        code = 900;
-       //      goto closeandexit;
      }
      //
+     Double_t lowerqtime = 0;
-     //    l0trm->SetBranchAddress("Mcmd", &mcmdev);
-     //    l0trm->SetBranchAddress("Header", &eh);
-     //
-     //
-     //
- //    UInt_t mctren = 0;
- //    UInt_t mcreen = 0;
- //    UInt_t numrec = 0;
-     //
-     //    Double_t upperqtime = 0;
-     Double_t lowerqtime = 0;
-     //    Double_t incli = 0;
-     //    oi = 0;
-     //    UInt_t ooi = 0;
      //
      // init quaternions information from mcmd-packets
      //
      Bool_t isf = true;
-     //    Int_t fgh = 0;
      vector<Float_t> q0;
      vector<Float_t> q1;
-Line 779 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 971 
 int OrbitalInfoCore(UInt_t run, TFile *f
      vector<Float_t> qYaw;
      vector<Int_t> qmode;
+     q0.reserve(4096);
+     q1.reserve(4096);
+     q2.reserve(4096);
+     q3.reserve(4096);
+     qtime.reserve(4096);
+     qPitch.reserve(4096);
+     qRoll.reserve(4096);
+     qYaw.reserve(4096);
+     qmode.reserve(4096);
+     if ( debug ) printf(" q0 capa %i \n",(int)q0.capacity());
      Int_t nt = 0;
-     //init sine-function interpolation
-     //cout<<"Sine coeficient initialisation..."<<endl;
-     vector<Sine> q0sine;
-     vector<Sine> q1sine;
-     vector<Sine> q2sine;
-     vector<Sine> q3sine;
-     vector<Sine> Yawsine;
-     /*TH2F* q0testing = new TH2F();
-       TH2F* q1testing = new TH2F();
-       TH2F* q2testing = new TH2F();
-       TH2F* q3testing = new TH2F();
-       TH2F* Pitchtesting = new TH2F();
-     */
      UInt_t must = 0;
+     Int_t currentYear = 0;
+     Int_t previousYear = 0;
      //
      // run over all the events of the run
      //
      if (verbose) printf("\n Ready to start! \n\n Processed events: \n\n");
+     if ( debug ){
+       printf("BEFORE LOOP ON EVENTS\n");
+       gObjectTable->Print();
+     }
      //
      //
      for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+runinfo->NEVENTS); re++){
+       //for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+10); re++){
        //
        if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000);
        if ( debug ) printf(" %i \n",procev);
-Line 826 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1021 
 int OrbitalInfoCore(UInt_t run, TFile *f
          continue;
        }
+       // just for testing:
+       //      if (re >= 5+runinfo->EV_FROM) atime += anni5;
+       //      if (re >= 7+runinfo->EV_FROM) atime += anni5;
+       //      if (re >= 9+runinfo->EV_FROM) atime += anni5;
+       //
+       // open IGRF files and do it only once if we are processing a full level2 file
+       //
+       Float_t kkyear;
+       UInt_t kyear, kmonth, kday, khour, kmin, ksec;
+       //
+       TTimeStamp kt = TTimeStamp(atime, kTRUE);
+       kt.GetDate(kTRUE, 0, &kyear, &kmonth, &kday);
+       kt.GetTime(kTRUE, 0, &khour, &kmin, &ksec);
+       kkyear = (float) kyear
+         + (kmonth*31.+ (float) kday)/365.
+         + (khour*3600.+kmin*60.+(float)ksec)/(24.*3600.*365.);
+       currentYear = int(kkyear/5.) * 5;
+       if ( debug ) printf(" prevy %i curry %i igrfloaded %i \n",previousYear,currentYear,igrfloaded);
+       if ( currentYear != previousYear ) igrfloaded = false;
+       previousYear = currentYear;
+       if ( debug ) printf(" prevy %i curry %i igrfloaded %i \n",previousYear,currentYear,igrfloaded);
+       //
+       if ( !igrfloaded ){
+         igrfloaded = true;
+         parerror=glparam->Query_GL_PARAM(atime,302,dbc); // parameters stored in DB in GL_PRAM table
+         if ( parerror<0 ) {
+           code = parerror;
+           goto closeandexit;
+         }
+         ltp1 = (Int_t)(glparam->PATH+glparam->NAME).Length();
+         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam->PATH+glparam->NAME).Data());
+         //
+         if ( glparam->NAME.EndsWith("s.txt") || glparam->NAME.EndsWith("s.dat") ){
+           if ( verbose ) printf("ERROR: Current date is beyond the latest secular variation file time span. Please update IGRF files to process data\n");
+           throw -906;
+         }
+         //
+         int isSecular = false;
+         //
+         parerror=glparam2->Query_GL_PARAM(atime+anni5,302,dbc); // parameters stored in DB in GL_PRAM table
+         if ( parerror<0 ) {
+           code = parerror;
+           goto closeandexit;
+         }
+         ltp2 = (Int_t)(glparam2->PATH+glparam2->NAME).Length();
+         if ( verbose ) printf(" Reading Earth's Magnetic Field parameter file: %s \n",(glparam2->PATH+glparam2->NAME).Data());
+         if ( glparam2->NAME.EndsWith("s.txt") || glparam2->NAME.EndsWith("s.dat") ){
+           isSecular = true;
+           if ( verbose ) printf(" Using secular variation file and hence fortran subroutine 'extrapolation'\n");
+         } else {
+           if ( verbose ) printf(" Using two field measurement files and hence fortran subroutine 'interpolation'\n");
+         }
+         //
+         initize_(&isSecular,(char *)(glparam->PATH+glparam->NAME).Data(),&ltp1,(char *)(glparam2->PATH+glparam2->NAME).Data(),&ltp2);
+         //
+         if (debug) cout<<"initize: "<<(char *)(glparam->PATH+glparam->NAME).Data()<<"\t"<<(char *)(glparam2->PATH+glparam2->NAME).Data()<<"\t isSecular? "<<isSecular<<endl;
+         //        GM_ScanIGRF(dbc, &G0, &G1, &H1);
+         TString igrfFile1 = glparam->PATH+glparam->NAME;
+         TString igrfFile2 = glparam2->PATH+glparam2->NAME;
+         GM_SetIGRF(isSecular,igrfFile1,igrfFile2, &G0, &G1, &H1);
+       }
+       //
+       // End IGRF stuff//
+       //
        //
        // retrieve tof informations
        //
-Line 841 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1105 
 int OrbitalInfoCore(UInt_t run, TFile *f
            if ( verbose ) printf(" OrbitalInfo - ERROR: no tof events with entry = %i in Level2 file\n",itr);
            if ( debug ) printf(" nobefrun %u re %u evfrom %u jumped %u reprocall %i \n",nobefrun,re,evfrom,jumped,reprocall);
            l0File->Close();
-           code = -901;
+           code = -904;
            goto closeandexit;
          };
          //
          tof->Clear();
          //
+         // Clones array must be cleared before going on
+         //
+         if ( hasNucleiTof ){
+           tcNucleiTof->Delete();
+         }
+         if ( hasExtNucleiTof ){
+           tcExtNucleiTof->Delete();
+         }
+         if ( hasExtTof ){
+           tcExtTof->Delete();
+         }
+         //
+         if ( verbose ) printf(" get tof tree entries... entry = %i in Level2 file\n",itr);
          if ( ttof->GetEntry(itr) <= 0 ){
-          if ( verbose ) printf(" problems with tof tree entries... entry = %i in Level2 file\n",itr);
+           if ( verbose ) printf(" problems with tof tree entries... entry = %i in Level2 file\n",itr);
-          if ( verbose ) printf(" nobefrun %u re %u evfrom %u jumped %u reprocall %i \n",nobefrun,re,evfrom,jumped,reprocall);
+           if ( verbose ) printf(" nobefrun %u re %u evfrom %u jumped %u reprocall %i \n",nobefrun,re,evfrom,jumped,reprocall);
-          throw -36;
+           throw -36;
          }
+         if ( verbose ) printf(" gat0\n");
          //
-       };
+       }
+       //
+       // retrieve tracker informations
+       //
+       if ( !standalone ){
+         if ( itr > nevtrkl2 ){
+           if ( verbose ) printf(" OrbitalInfo - ERROR: no trk events with entry = %i in Level2 file\n",itr);
+           if ( debug ) printf(" nobefrun %u re %u evfrom %u jumped %u reprocall %i \n",nobefrun,re,evfrom,jumped,reprocall);
+           l0File->Close();
+           code = -905;
+           goto closeandexit;
+         }
+         //
+         if ( verbose ) printf(" gat1\n");
+         trke->Clear();
+         //
+         // Clones array must be cleared before going on
+         //
+         if ( hasNucleiTrk ){
+           if ( verbose ) printf(" gat2\n");
+           tcNucleiTrk->Delete();
+           if ( verbose ) printf(" gat3\n");
+           torbNucleiTrk->Delete();
+         }
+         if ( hasExtNucleiTrk ){
+           if ( verbose ) printf(" gat4\n");
+           tcExtNucleiTrk->Delete();
+           if ( verbose ) printf(" gat5\n");
+           torbExtNucleiTrk->Delete();
+         }
+         if ( hasExtTrk ){
+           if ( verbose ) printf(" gat6\n");
+           tcExtTrk->Delete();
+           if ( verbose ) printf(" gat7\n");
+           torbExtTrk->Delete();
+         }
+         //
+         if ( verbose ) printf(" get trk tree entries... entry = %i in Level2 file\n",itr);
+         if ( ttrke->GetEntry(itr) <= 0 ) throw -36;
+         //
+       }
        //
        procev++;
        //
-Line 865 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1184 
 int OrbitalInfoCore(UInt_t run, TFile *f
        OrbitalInfoTrkVar *t_orb = new OrbitalInfoTrkVar();
        if( !(orbitalinfo->OrbitalInfoTrk) ) orbitalinfo->OrbitalInfoTrk = new TClonesArray("OrbitalInfoTrkVar",2);
        TClonesArray &tor = *orbitalinfo->OrbitalInfoTrk;
+       // Geomagnetic coordinates calculation variables
+       GMtype_CoordSpherical CoordSpherical, DipoleSpherical;
+       GMtype_CoordCartesian CoordCartesian, DipoleCartesian;
+       GMtype_Model Model;
+       GMtype_Pole Pole;
        //
        // Fill OBT, pkt_num and absTime
        //
-Line 894 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1220 
 int OrbitalInfoCore(UInt_t run, TFile *f
              + (month*31.+ (float) day)/365.
              + (hour*3600.+min*60.+(float)sec)/(24.*3600.*365.);
            //
            if ( debug ) printf(" %i compute magnetic dipole moment get dipole moment for year\n",procev);
            if ( debug ) printf(" %i jyear %f dimo %f \n",procev,jyear,dimo);
            feldcof_(&jyear, &dimo); // get dipole moment for year
            if ( debug ) printf(" %i compute magnetic dipole moment end\n",procev);
+           //      GM_TimeAdjustCoefs(year, jyear, G0, G1, H1, &Model);
+           GM_TimeAdjustCoefs(GM_STARTYEAR, (jyear-currentYear+GM_STARTYEAR), G0, G1, H1, &Model);  // EM: input this way due to the new way of storing data into Gn,H1 and to avoid changing GM_Time...
+           GM_PoleLocation(Model, &Pole);
          } else {
            code = -56;
            goto closeandexit;
-Line 907 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1238 
 int OrbitalInfoCore(UInt_t run, TFile *f
        //
        cOrbit orbits(*gltle->GetTle());
        //
-       if ( debug ) printf(" I am Here \n");
-       //
        // synchronize with quaternions data
        //
        if ( isf && neventsm>0 ){
-Line 922 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1251 
 int OrbitalInfoCore(UInt_t run, TFile *f
            if ( ch->GetEntry(ik) <= 0 ) throw -36;
            tmpSize = mcmdev->Records->GetEntries();
            //      numrec = tmpSize;
+           if ( debug ) cout << "packet number " << ik <<"\tnumber of subpackets is " << tmpSize << endl;
            for (Int_t j3 = 0;j3<tmpSize;j3++){  //number of subpackets
-             if ( debug ) printf(" ik %i j3 %i eh eh eh \n",ik,j3);
              mcmdrc = (pamela::McmdRecord*)mcmdev->Records->At(j3);
              if ( mcmdrc ){ // missing inclination bug [8RED 090116]
                if ( debug ) printf(" pluto \n");
                if ((int)mcmdrc->ID1 == 226 && mcmdrc->Mcmd_Block_crc_ok == 1){ //Check that it is Inclination Packet
-                 L_QQ_Q_l_upper->fill(mcmdrc->McmdData);
+                L_QQ_Q_l_upper->fill(mcmdrc->McmdData);
                  for (UInt_t ui = 0; ui < 6; ui++){
                    if (ui>0){
                      if (L_QQ_Q_l_upper->time[ui]>L_QQ_Q_l_upper->time[0]){
-Line 936 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1265 
 int OrbitalInfoCore(UInt_t run, TFile *f
                        Double_t u_time = dbtime->DBabsTime((UInt_t)(L_QQ_Q_l_upper->time[ui]*1000-DeltaOBT*1000));
                        Int_t recSize = recqtime.size();
                        if(lowerqtime > recqtime[recSize-1]){
-                         Int_t sizeqmcmd = qtime.size();
+                          // to avoid interpolation between bad quaternions arrays
-                         inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
+                          if(sqrt(pow(L_QQ_Q_l_upper->quat[ui][0],2)+pow(L_QQ_Q_l_upper->quat[ui][1],2)+pow(L_QQ_Q_l_upper->quat[ui][2],2)+pow(L_QQ_Q_l_upper->quat[ui][3],2))>0.99999){
-                         qtime[sizeqmcmd]=u_time;
-                         q0[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][0];
-                         q1[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][1];
-                         q2[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][2];
-                         q3[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][3];
-                         qmode[sizeqmcmd]=holeq(lowerqtime,qtime[sizeqmcmd],L_QQ_Q_l_lower,L_QQ_Q_l_upper,ui);
-                         lowerqtime = u_time;
-                         orbits.getPosition((double) (u_time - gltle->GetFromTime())/60., &eCi);
-                         RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,L_QQ_Q_l_upper->quat[ui][0],L_QQ_Q_l_upper->quat[ui][1],L_QQ_Q_l_upper->quat[ui][2],L_QQ_Q_l_upper->quat[ui][3]);
-                         qRoll[sizeqmcmd]=RYPang_upper->Kren;
-                         qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
-                         qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
-                       }
-                       for(Int_t mu = nt;mu<recSize;mu++){
-                         if(recqtime[mu]>lowerqtime && recqtime[mu]<u_time){
-                           nt=mu;
-                           Int_t sizeqmcmd = qtime.size();
-                           inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
-                           qtime[sizeqmcmd]=recqtime[mu];
-                           q0[sizeqmcmd]=recq0[mu];
-                           q1[sizeqmcmd]=recq1[mu];
-                           q2[sizeqmcmd]=recq2[mu];
-                           q3[sizeqmcmd]=recq3[mu];
-                           qmode[sizeqmcmd]=-10;
-                           orbits.getPosition((double) (qtime[sizeqmcmd] - gltle->GetFromTime())/60., &eCi);
-                           RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,recq0[mu],recq1[mu],recq2[mu],recq3[mu]);
-                           qRoll[sizeqmcmd]=RYPang_upper->Kren;
-                           qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
-                           qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
-                         }
-                         if(recqtime[mu]>=u_time){
                            Int_t sizeqmcmd = qtime.size();
                            inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
                            qtime[sizeqmcmd]=u_time;
-Line 983 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1281 
 int OrbitalInfoCore(UInt_t run, TFile *f
                            qRoll[sizeqmcmd]=RYPang_upper->Kren;
                            qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
                            qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
-                           break;
+                          }
+                       }
+                       for(Int_t mu = nt;mu<recSize;mu++){
+                         if(recqtime[mu]>lowerqtime && recqtime[mu]<u_time){
+                           if(sqrt(pow(recq0[mu],2)+pow(recq1[mu],2)+pow(recq2[mu],2)+pow(recq3[mu],2))>0.99999){
+                             nt=mu;
+                             Int_t sizeqmcmd = qtime.size();
+                             inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
+                             qtime[sizeqmcmd]=recqtime[mu];
+                             q0[sizeqmcmd]=recq0[mu];
+                             q1[sizeqmcmd]=recq1[mu];
+                             q2[sizeqmcmd]=recq2[mu];
+                             q3[sizeqmcmd]=recq3[mu];
+                             qmode[sizeqmcmd]=-10;
+                             orbits.getPosition((double) (qtime[sizeqmcmd] - gltle->GetFromTime())/60., &eCi);
+                             RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,recq0[mu],recq1[mu],recq2[mu],recq3[mu]);
+                             qRoll[sizeqmcmd]=RYPang_upper->Kren;
+                             qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
+                             qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
+                           }
+                         }
+                         if(recqtime[mu]>=u_time){
+                           if(sqrt(pow(L_QQ_Q_l_upper->quat[ui][0],2)+pow(L_QQ_Q_l_upper->quat[ui][1],2)+pow(L_QQ_Q_l_upper->quat[ui][2],2)+pow(L_QQ_Q_l_upper->quat[ui][3],2))>0.99999){
+                             Int_t sizeqmcmd = qtime.size();
+                             inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
+                             qtime[sizeqmcmd]=u_time;
+                             q0[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][0];
+                             q1[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][1];
+                             q2[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][2];
+                             q3[sizeqmcmd]=L_QQ_Q_l_upper->quat[ui][3];
+                             qmode[sizeqmcmd]=holeq(lowerqtime,qtime[sizeqmcmd],L_QQ_Q_l_lower,L_QQ_Q_l_upper,ui);
+                             lowerqtime = u_time;
+                             orbits.getPosition((double) (u_time - gltle->GetFromTime())/60., &eCi);
+                             RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,L_QQ_Q_l_upper->quat[ui][0],L_QQ_Q_l_upper->quat[ui][1],L_QQ_Q_l_upper->quat[ui][2],L_QQ_Q_l_upper->quat[ui][3]);
+                             qRoll[sizeqmcmd]=RYPang_upper->Kren;
+                             qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
+                             qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
+                             break;
+                           }
                          }
                        }
                      }
-Line 993 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1337 
 int OrbitalInfoCore(UInt_t run, TFile *f
                      if(lowerqtime>u_time)nt=0;
                      Int_t recSize = recqtime.size();
                      if(lowerqtime > recqtime[recSize-1]){
-                       Int_t sizeqmcmd = qtime.size();
+                       if(sqrt(pow(L_QQ_Q_l_upper->quat[ui][0],2)+pow(L_QQ_Q_l_upper->quat[ui][1],2)+pow(L_QQ_Q_l_upper->quat[ui][2],2)+pow(L_QQ_Q_l_upper->quat[ui][3],2))>0.99999){
-                       inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
-                       qtime[sizeqmcmd]=u_time;
-                       q0[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][0];
-                       q1[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][1];
-                       q2[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][2];
-                       q3[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][3];
-                       qmode[sizeqmcmd]=holeq(lowerqtime,qtime[sizeqmcmd],L_QQ_Q_l_lower,L_QQ_Q_l_upper,ui);
-                       lowerqtime = u_time;
-                       orbits.getPosition((double) (u_time - gltle->GetFromTime())/60., &eCi);
-                       RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,L_QQ_Q_l_upper->quat[0][0],L_QQ_Q_l_upper->quat[0][1],L_QQ_Q_l_upper->quat[0][2],L_QQ_Q_l_upper->quat[0][3]);
-                       qRoll[sizeqmcmd]=RYPang_upper->Kren;
-                       qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
-                       qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
-                     }
-                     for(Int_t mu = nt;mu<recSize;mu++){
-                       if(recqtime[mu]>lowerqtime && recqtime[mu]<u_time){
-                         nt=mu;
-                         Int_t sizeqmcmd = qtime.size();
-                         inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
-                         qtime[sizeqmcmd]=recqtime[mu];
-                         q0[sizeqmcmd]=recq0[mu];
-                         q1[sizeqmcmd]=recq1[mu];
-                         q2[sizeqmcmd]=recq2[mu];
-                         q3[sizeqmcmd]=recq3[mu];
-                         qmode[sizeqmcmd]=-10;
-                         orbits.getPosition((double) (qtime[sizeqmcmd] - gltle->GetFromTime())/60., &eCi);
-                         RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,recq0[mu],recq1[mu],recq2[mu],recq3[mu]);
-                         qRoll[sizeqmcmd]=RYPang_upper->Kren;
-                         qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
-                         qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
-                       }
-                       if(recqtime[mu]>=u_time){
                          Int_t sizeqmcmd = qtime.size();
                          inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
                          qtime[sizeqmcmd]=u_time;
-Line 1040 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1352 
 int OrbitalInfoCore(UInt_t run, TFile *f
                          qRoll[sizeqmcmd]=RYPang_upper->Kren;
                          qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
                          qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
-                         CopyQ(L_QQ_Q_l_lower,L_QQ_Q_l_upper);
+                       }
-                         break;
+                     }
+                     for(Int_t mu = nt;mu<recSize;mu++){
+                       if(recqtime[mu]>lowerqtime && recqtime[mu]<u_time){
+                          if(sqrt(pow(recq0[mu],2)+pow(recq1[mu],2)+pow(recq2[mu],2)+pow(recq3[mu],2))>0.99999){
+ //                         nt=mu;
+                            Int_t sizeqmcmd = qtime.size();
+                            inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
+                            qtime[sizeqmcmd]=recqtime[mu];
+                            q0[sizeqmcmd]=recq0[mu];
+                            q1[sizeqmcmd]=recq1[mu];
+                            q2[sizeqmcmd]=recq2[mu];
+                            q3[sizeqmcmd]=recq3[mu];
+                            qmode[sizeqmcmd]=-10;
+                            orbits.getPosition((double) (qtime[sizeqmcmd] - gltle->GetFromTime())/60., &eCi);
+                            RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,recq0[mu],recq1[mu],recq2[mu],recq3[mu]);
+                            qRoll[sizeqmcmd]=RYPang_upper->Kren;
+                            qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
+                            qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
+                          }
+                       }
+                       if(recqtime[mu]>=u_time){
+                          if(sqrt(pow(L_QQ_Q_l_upper->quat[0][0],2)+pow(L_QQ_Q_l_upper->quat[0][1],2)+pow(L_QQ_Q_l_upper->quat[0][2],2)+pow(L_QQ_Q_l_upper->quat[0][3],2))>0.99999){
+                            Int_t sizeqmcmd = qtime.size();
+                            inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
+                            qtime[sizeqmcmd]=u_time;
+                            q0[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][0];
+                            q1[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][1];
+                            q2[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][2];
+                            q3[sizeqmcmd]=L_QQ_Q_l_upper->quat[0][3];
+                            qmode[sizeqmcmd]=holeq(lowerqtime,qtime[sizeqmcmd],L_QQ_Q_l_lower,L_QQ_Q_l_upper,ui);
+                            lowerqtime = u_time;
+                            orbits.getPosition((double) (u_time - gltle->GetFromTime())/60., &eCi);
+                            RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,L_QQ_Q_l_upper->quat[0][0],L_QQ_Q_l_upper->quat[0][1],L_QQ_Q_l_upper->quat[0][2],L_QQ_Q_l_upper->quat[0][3]);
+                            qRoll[sizeqmcmd]=RYPang_upper->Kren;
+                            qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
+                            qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+                            CopyQ(L_QQ_Q_l_lower,L_QQ_Q_l_upper);
+ /* CHECK RECOVERED QUATERNIONS PROBLEM */
+ if(recqtime[mu]>=1160987921.75 && recqtime[mu]<=1160987932.00){
+   cout<<"We found it while checking all quaternions"<<"\t"<<recqtime[mu]<<endl;
+ }
+                            break;
+                          }
                        }
                      }
                    }
                  }
                }
              }
-             if ( debug ) printf(" ciccio \n");
+             //if ( debug ) cout << "subpacket " << j3 << "\t qtime = " << qtime[qtime.size()-1] << endl;
            }
          }
-         if(qtime.size()==0){
+         if(qtime.size()==0){                            // in case if no orientation information in data
+           if ( debug ) cout << "qtime.size() = 0" << endl;
            for(UInt_t my=0;my<recqtime.size();my++){
-             Int_t sizeqmcmd = qtime.size();
+             if(sqrt(pow(recq0[my],2)+pow(recq1[my],2)+pow(recq2[my],2)+pow(recq3[my],2))>0.99999){
-             inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
+               Int_t sizeqmcmd = qtime.size();
-             qtime[sizeqmcmd]=recqtime[my];
+               inclresize(qtime,q0,q1,q2,q3,qmode,qRoll,qPitch,qYaw);
-             q0[sizeqmcmd]=recq0[my];
+               qtime[sizeqmcmd]=recqtime[my];
-             q1[sizeqmcmd]=recq1[my];
+               q0[sizeqmcmd]=recq0[my];
-             q2[sizeqmcmd]=recq2[my];
+               q1[sizeqmcmd]=recq1[my];
-             q3[sizeqmcmd]=recq3[my];
+               q2[sizeqmcmd]=recq2[my];
-             qmode[sizeqmcmd]=-10;
+               q3[sizeqmcmd]=recq3[my];
-             orbits.getPosition((double) (qtime[sizeqmcmd] - gltle->GetFromTime())/60., &eCi);
+               qmode[sizeqmcmd]=-10;
-             RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,recq0[my],recq1[my],recq2[my],recq3[my]);
+               orbits.getPosition((double) (qtime[sizeqmcmd] - gltle->GetFromTime())/60., &eCi);
-             qRoll[sizeqmcmd]=RYPang_upper->Kren;
+               RYPang_upper->TransAngle(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,recq0[my],recq1[my],recq2[my],recq3[my]);
-             qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
+               qRoll[sizeqmcmd]=RYPang_upper->Kren;
-             qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+               qYaw[sizeqmcmd]=RYPang_upper->Ryskanie;
+               qPitch[sizeqmcmd]=RYPang_upper->Tangazh;
+             }
            }
          }
-         if ( debug ) printf(" fuffi \n");
          if ( debug ) printf(" puffi \n");
          Double_t tmin = 9999999999.;
-Line 1079 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1439 
 int OrbitalInfoCore(UInt_t run, TFile *f
            if(qtime[tre]>tmax)tmax = qtime[tre];
            if(qtime[tre]<tmin)tmin = qtime[tre];
          }
-         if ( debug ) printf(" gnfuffi \n");
+         // sorting quaternions by time
+        Bool_t t = true;
+         while(t){
+          t=false;
+           for(UInt_t i=0;i<qtime.size()-1;i++){
+             if(qtime[i]>qtime[i+1]){
+               Double_t tmpr = qtime[i];
+               qtime[i]=qtime[i+1];
+               qtime[i+1] = tmpr;
+               tmpr = q0[i];
+               q0[i]=q0[i+1];
+               q0[i+1] = tmpr;
+               tmpr = q1[i];
+               q1[i]=q1[i+1];
+               q1[i+1] = tmpr;
+               tmpr = q2[i];
+               q2[i]=q2[i+1];
+               q2[i+1] = tmpr;
+               tmpr = q3[i];
+               q3[i]=q3[i+1];
+               q3[i+1] = tmpr;
+               tmpr = qRoll[i];
+               qRoll[i]=qRoll[i+1];
+               qRoll[i+1] = tmpr;
+               tmpr = qYaw[i];
+               qYaw[i]=qYaw[i+1];
+               qYaw[i+1] = tmpr;
+               tmpr = qPitch[i];
+               qPitch[i]=qPitch[i+1];
+               qPitch[i+1] = tmpr;
+                 t=true;
+             }
+           }
+         }
+         if ( debug ){
+           cout << "we have loaded quaternions: size of quaternions set is "<< qtime.size() << endl;
+          for(UInt_t i=0;i<qtime.size();i++) cout << qtime[i] << "\t";
+           cout << endl << endl;
+           Int_t lopu;
+           cin >> lopu;
+        }
        } // if we processed first event
-Line 1087 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1488 
 int OrbitalInfoCore(UInt_t run, TFile *f
        //Filling Inclination information
        Double_t incli = 0;
        if ( qtime.size() > 1 ){
+         if ( debug ) cout << "ok quaternions is exist and mu = " << must << endl;
+         if ( debug ) cout << "qtimes[ " << qtime[0] << " , " << qtime[qtime.size()-1] << " ]\tatime = "<<atime<<endl;
          for(UInt_t mu = must;mu<qtime.size()-1;mu++){
            if ( debug ) printf(" ??grfuffi %i sixe %i must %i \n",mu,qtime.size()-1,must);
            if(qtime[mu+1]>qtime[mu]){
-             if ( debug ) printf(" grfuffi2 %i \n",mu);
+             if ( debug ) cout << "qtime[" << mu << "] = " << qtime[mu] << "\tqtime[" << mu+1 << "] = " << qtime[mu+1] << "\tatime = " << atime << endl;
              if(atime<=qtime[mu+1] && atime>=qtime[mu]){
+               if ( debug ) cout << "here we have found proper quaternions for interpolation: mu = "<<mu<<endl;
                must = mu;
-               if ( debug ) printf(" grfuffi3 %i \n",mu);
                incli = (qPitch[mu+1]-qPitch[mu])/(qtime[mu+1]-qtime[mu]);
                orbitalinfo->theta =  incli*atime+qPitch[mu+1]-incli*qtime[mu+1];
                incli = (qRoll[mu+1]-qRoll[mu])/(qtime[mu+1]-qtime[mu]);
-Line 1109 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1512 
 int OrbitalInfoCore(UInt_t run, TFile *f
                orbitalinfo->q2 =  incli*atime+q2[mu+1]-incli*qtime[mu+1];
                incli = (q3[mu+1]-q3[mu])/(qtime[mu+1]-qtime[mu]);
                orbitalinfo->q3 =  incli*atime+q3[mu+1]-incli*qtime[mu+1];
+               Float_t tg = (qtime[mu+1]-qtime[mu])/1000.0;
-               orbitalinfo->TimeGap = qtime[mu+1]-qtime[mu];
+               if(tg>=1) tg=0.00;
+               orbitalinfo->TimeGap = TMath::Min(TMath::Abs(qtime[mu+1])-atime,TMath::Abs(atime-qtime[mu]))+tg;//qtime[mu+1]-qtime[mu];
                orbitalinfo->mode = qmode[mu+1];
+               //if(atime==qtime[mu] || atime==qtime[mu+1]) orbitalinfo->qkind = 0; else orbitalinfo->qkind=1;
                //if(qmode[mu+1]==-10) orbitalinfo->R10r = true;else orbitalinfo->R10r = false;
-               //reserved for next versions Vitaly.
-               /*if(qmode[mu+1]==-10 || qmode[mu+1]==0 || qmode[mu+1]==1 || qmode[mu+1]==3 || qmode[mu+1]==4 || qmode[mu+1]==6){
-               //linear interpolation
-               incli = (q0[mu+1]-q0[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q0 =  incli*atime+q0[mu+1]-incli*qtime[mu+1];
-               incli = (q1[mu+1]-q1[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q1 =  incli*atime+q1[mu+1]-incli*qtime[mu+1];
-               incli = (q2[mu+1]-q2[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q2 =  incli*atime+q2[mu+1]-incli*qtime[mu+1];
-               incli = (q3[mu+1]-q3[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q3 =  incli*atime+q3[mu+1]-incli*qtime[mu+1];
-               }else{
-               //sine interpolation
-               for(UInt_t mt=0;mt<q0sine.size();mt++){
-               if(atime<=q0sine[mt].finishPoint && atime>=q0sine[mt].startPoint){
-               if(!q0sine[mt].NeedFit)orbitalinfo->q0=q0sine[mt].A*sin(q0sine[mt].b*atime+q0sine[mt].c);else{
-               incli = (q0[mu+1]-q0[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q0 =  incli*atime+q0[mu+1]-incli*qtime[mu+1];
-               }
-               }
-               if(atime<=q1sine[mt].finishPoint && atime>=q1sine[mt].startPoint){
-               if(!q1sine[mt].NeedFit)orbitalinfo->q1=q1sine[mt].A*sin(q1sine[mt].b*atime+q1sine[mt].c);else{
-               incli = (q1[mu+1]-q1[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q1 =  incli*atime+q1[mu+1]-incli*qtime[mu+1];
-               }
-               }
-               if(atime<=q2sine[mt].finishPoint && atime>=q2sine[mt].startPoint){
-               if(!q2sine[mt].NeedFit)orbitalinfo->q2=q0sine[mt].A*sin(q2sine[mt].b*atime+q2sine[mt].c);else{
-               incli = (q2[mu+1]-q2[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q2 =  incli*atime+q2[mu+1]-incli*qtime[mu+1];
-               }
-               }
-               if(atime<=q3sine[mt].finishPoint && atime>=q3sine[mt].startPoint){
-               if(!q3sine[mt].NeedFit)orbitalinfo->q3=q0sine[mt].A*sin(q3sine[mt].b*atime+q3sine[mt].c);else{
-               incli = (q3[mu+1]-q3[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->q3 =  incli*atime+q3[mu+1]-incli*qtime[mu+1];
-               }
-               }
-               if(atime<=Yawsine[mt].finishPoint && atime>=Yawsine[mt].startPoint){
-               if(!Yawsine[mt].NeedFit)orbitalinfo->phi=Yawsine[mt].A*sin(Yawsine[mt].b*atime+Yawsine[mt].c);else{
-               incli = (qYaw[mu+1]-qYaw[mu])/(qtime[mu+1]-qtime[mu]);
-               orbitalinfo->phi =  incli*atime+qYaw[mu+1]-incli*qtime[mu+1];
-               }
-               }
-               }
-               }*/
-               //q0testing->Fill(atime,orbitalinfo->q0,100);
-               //q1testing->Fill(atime,orbitalinfo->q1,100);
-               //Pitchtesting->Fill(atime,orbitalinfo->etha);
-               //q2testing->Fill(atime,orbitalinfo->q2);
-               //q3testing->Fill(atime,orbitalinfo->q3);
                if ( debug ) printf(" grfuffi4 %i \n",mu);
                break;
              }
-Line 1176 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1530 
 int OrbitalInfoCore(UInt_t run, TFile *f
        //
        if ( orbitalinfo->q0< -999 || orbitalinfo->q1 < -999 || orbitalinfo->q2 < -999 || orbitalinfo->q3 < -999 || orbitalinfo->q0 != orbitalinfo->q0 || orbitalinfo->q1 != orbitalinfo->q1 || orbitalinfo->q2 != orbitalinfo->q2 || orbitalinfo->q3 != orbitalinfo->q3 ){
+         if ( debug ) cout << "ops no iclination information" << endl;
          orbitalinfo->mode = 10;
          orbitalinfo->q0 = -1000.;
          orbitalinfo->q1 = -1000.;
-Line 1184 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1539 
 int OrbitalInfoCore(UInt_t run, TFile *f
          orbitalinfo->etha = -1000.;
          orbitalinfo->phi = -1000.;
          orbitalinfo->theta = -1000.;
+         orbitalinfo->TimeGap = -1000.;
+         //orbitalinfo->qkind = -1000;
+         //      if ( debug ){
+         //        Int_t lopu;
+         //         cin >> lopu;
+         //      }
          if ( debug ) printf(" grfuffi6 \n");
        }
        //
-Line 1198 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1560 
 int OrbitalInfoCore(UInt_t run, TFile *f
        lon = (coo.m_Lon > M_PI) ? rad2deg(coo.m_Lon - 2*M_PI) : rad2deg(coo.m_Lon);
        lat = rad2deg(coo.m_Lat);
        alt = coo.m_Alt;
+       cOrbit orbits2(*gltle->GetTle());
+       orbits2.getPosition((double) (atime - gltle->GetFromTime())/60., &eCi);
+       //      Float_t x=eCi.getPos().m_x;
+       //      Float_t y=eCi.getPos().m_y;
+       //      Float_t z=eCi.getPos().m_z;
+       TVector3 V(eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z);
+       TVector3 Pos(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z);
+       Float_t dlon=Pos.Phi()*TMath::RadToDeg()-lon;
+       Pos.RotateZ(-dlon*TMath::DegToRad());
+       V.RotateZ(-dlon*TMath::DegToRad());
+       Float_t diro;
+       if(V.Z()>0) diro=1; else diro=-1;
+       // 10REDNEW
+       Int_t errq=0;
+       Int_t azim=0;
+       Int_t qual=0;
+       Int_t MU=0;
+       for(UInt_t mu = 0;mu<RTtime2.size()-1;mu++){
+         if(atime<RTstart[mu+1] && atime>=RTstart[mu]){
+           errq=RTerrq[mu];
+           azim=RTazim[mu];
+           qual=RTqual[mu];
+           MU=mu;
+           break;
+         }
+       }
+       orbitalinfo->errq = errq;
+       orbitalinfo->azim = azim;
+       orbitalinfo->rtqual=qual;
+       orbitalinfo->qkind = 0;
        if ( debug ) printf(" coord done \n");
-       //
        if( lon<180 && lon>-180 && lat<90 && lat>-90 && alt>0 ){
          //
          orbitalinfo->lon = lon;
          orbitalinfo->lat = lat;
-         orbitalinfo->alt = alt ;
+         orbitalinfo->alt = alt;
+         orbitalinfo->V = V;
+         //      GMtype_CoordGeodetic  location;
+         location.lambda = lon;
+         location.phi = lat;
+         location.HeightAboveEllipsoid = alt;
+         GM_GeodeticToSpherical(Ellip, location, &CoordSpherical);
+         GM_SphericalToCartesian(CoordSpherical,  &CoordCartesian);
+         GM_EarthCartToDipoleCartCD(Pole, CoordCartesian, &DipoleCartesian);
+         GM_CartesianToSpherical(DipoleCartesian, &DipoleSpherical);
+         orbitalinfo->londip = DipoleSpherical.lambda;
+         orbitalinfo->latdip = DipoleSpherical.phig;
+         if(debug)cout<<"geodetic:\t"<<lon<<"\t"<<lat<<"\tgeomagnetic:\t"<<orbitalinfo->londip<<"\t"<<orbitalinfo->latdip<<endl;
          //
          // compute mag field components and L shell.
          //
-Line 1225 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1638 
 int OrbitalInfoCore(UInt_t run, TFile *f
          orbitalinfo->L = xl;
          // Set Stormer vertical cutoff using L shell.
          orbitalinfo->cutoffsvl = 14.295 / (xl*xl); //
-         /*
+         if(debug)cout << "L = " << xl << "\tM = " << dimo << "\tvertical cutoff:  "<< orbitalinfo->cutoffsvl << endl;
-           ---------- Forwarded message ----------
-           Date: Wed, 09 May 2012 12:16:47 +0200
-           From: Alessandro Bruno <alessandro.bruno@ba.infn.it>
+ //           ---------- Forwarded message ----------
-           To: Mirko Boezio <mirko.boezio@ts.infn.it>
+ //           Date: Wed, 09 May 2012 12:16:47 +0200
-           Cc: Francesco S. Cafagna <Francesco.Cafagna@ba.infn.it>
+ //           From: Alessandro Bruno <alessandro.bruno@ba.infn.it>
-           Subject: St�rmer vertical cutoff
+ //           To: Mirko Boezio <mirko.boezio@ts.infn.it>
+ //           Cc: Francesco S. Cafagna <Francesco.Cafagna@ba.infn.it>
-           Ciao Mirko,
+ //           Subject: St�rmer vertical cutoff
-           volevo segnalarti che il valore dello St�rmer vertical cutoff nel Level2 �
-           sovrastimato di circa il 4%.
+ //           Ciao Mirko,
-           Dopo un'approfondita analisi con l'IGRF-05 abbiamo ricavano un valore pari
+ //           volevo segnalarti che il valore dello St�rmer vertical cutoff nel Level2 �
-           a: 14.295 / L^2 anzich� 14.9 / L^2, valore obsoleto in quanto riferito agli
+ //           sovrastimato di circa il 4%.
-           anni '50.
+ //           Dopo un'approfondita analisi con l'IGRF-05 abbiamo ricavano un valore pari
-         */
+ //           a: 14.295 / L^2 anzich� 14.9 / L^2, valore obsoleto in quanto riferito agli
+ //           anni '50.
+ //
          //14.9/(xl*xl);
          orbitalinfo->igrf_icode = icode;
          //
-Line 1249 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1664 
 int OrbitalInfoCore(UInt_t run, TFile *f
        //
        // pitch angles
        //
-       //if ( orbitalinfo->mode != 10 && orbitalinfo->mode != 5 && orbitalinfo->mode !=7 && orbitalinfo->mode != 9 ){
+       if( orbitalinfo->TimeGap>0){
-       if( orbitalinfo->TimeGap>0 && orbitalinfo->TimeGap<2000000){
          //
          if ( debug ) printf(" timegap %f \n",orbitalinfo->TimeGap);
          Float_t Bx = -orbitalinfo->Bdown;
          Float_t By = orbitalinfo->Beast;
          Float_t Bz = orbitalinfo->Bnorth;
-         //
-         TMatrixD Fij = PO->ECItoGreenwich(PO->QuatoECI(orbitalinfo->q0,orbitalinfo->q1,orbitalinfo->q2,orbitalinfo->q3),orbitalinfo->absTime);
+ //      TMatrixD Qiji(3,3);
+         TMatrixD Qij = PO->QuatoECI(orbitalinfo->q0,orbitalinfo->q1,orbitalinfo->q2,orbitalinfo->q3);
+         TMatrixD Dij = PO->ECItoGEO(Qij,orbitalinfo->absTime,orbitalinfo->lat,orbitalinfo->lon);
+ //10REDNEW
+         // If initial orientation data have reason to be inaccurate
+        Float_t tg = 0.00;
+        Float_t tmptg;
+        if(MU!=0){
+ //      if(orbitalinfo->TimeGap>0 && errq==0 && azim==0){               // 10RED CHECK  (comparison between three metod of recovering orientation)
+        if((atime>=RTstart[MU] && atime<RTstart[MU+1] && RTbank1[MU]==0 && RTbank2[MU]==0 && TMath::Abs(orbitalinfo->etha)>0.1) || ((RTbank1[MU]!=0 || RTbank2[MU]!=0) && atime>=RTstart[MU] && atime<RTstart[MU+1] && azim==0 && (errq!=0 || orbitalinfo->TimeGap>10.0 || ((modf(orbitalinfo->TimeGap,&tmptg)*1000>10 || modf(orbitalinfo->TimeGap,&tmptg)*1000==0.0) && orbitalinfo->TimeGap>2.0)))){
+         //found in Rotation Table this data for this time interval
+         if(atime<RTtime1[0])
+           orbitalinfo->azim = 5;        //means that RotationTable no started yet
+        else{
+                 // search for angle betwean velosity and direction to north in tangential to Earth surfase plane in satellite position
+               Double_t bank=RTstart[MU];
+               Double_t tlat=orbitalinfo->lat;
+               tg=modf(orbitalinfo->TimeGap,&tg)*1000;
+               if(atime>=RTpluto1[MU] && atime<=RTpluto2[MU]){
+                 Double_t kar=(RTbank2[MU]-RTbank1[MU])/(RTtime2[MU]-RTtime1[MU]);
+                 Double_t bak=RTbank1[MU]-kar*RTtime1[MU];
+                 bank=kar*atime+bak;
+               }
+               if(atime>=RTstart[MU] && atime<RTpluto1[MU]){
+                  Double_t s_dBdt2=(RTbpluto1[MU]-RTbank1[MU])/(Int_t)(RTpluto1[MU]-RTstart[MU]);
+                  Double_t s_t2=((Double_t)RTpluto1[MU]+(Double_t)RTstart[MU])/2. - RTstart[MU];
+                  Double_t s_t1=RTstart[MU]-RTstart[MU];
+                  Double_t s_k=s_dBdt2/(s_t2-s_t1);
+                  Double_t s_b=-s_k*s_t1;
+                  Double_t s_t3=RTpluto1[MU]-RTstart[MU];
+                  Double_t s_b3=RTbpluto1[MU];
+                  Double_t s_c=s_b3-0.5*s_k*s_t3*s_t3 -s_b*s_t3;
+                  bank=0.5*s_k*(atime-RTstart[MU])*(atime-RTstart[MU]) + s_b*(atime-RTstart[MU]) + s_c;
+              }
+               if(atime>RTpluto2[MU] && atime<=RTstart[MU+1]){
+                  Double_t s_dBdt2=(RTbpluto2[MU] - RTbank2[MU])/(Int_t)(RTpluto2[MU]-RTstart[MU+1]);
+                  Double_t s_t2=((Double_t)RTpluto2[MU]+(Double_t)RTstart[MU+1])/2. - RTstart[MU];
+                  Double_t s_t1=RTstart[MU+1]-RTstart[MU];
+                  Double_t s_k=s_dBdt2/(s_t2-s_t1);
+                  Double_t s_b=-s_k*s_t1;
+                  Double_t s_t3=RTpluto2[MU]-RTstart[MU];
+                  Double_t s_b3=RTbpluto2[MU];
+                  Double_t s_c=s_b3-0.5*s_k*s_t3*s_t3 -s_b*s_t3;
+                bank=0.5*s_k*(atime-RTstart[MU])*(atime-RTstart[MU]) + s_b*(atime-RTstart[MU]) + s_c;
+              }
+               if(TMath::Abs(orbitalinfo->etha-bank)>0.1){
+                 orbitalinfo->etha=bank;
+                 Double_t spitch = 0.00001;  // temprary not zero to avoid problem with tranzition from Euler angles to orientation matrix
+                 //Estimations of pitch angle of satellite
+                 if(TMath::Abs(bank)>0.7){
+                    Float_t spitch1=TMath::DegToRad()*0.7*diro;//RTdir1[MU];
+                    Float_t spitch2=TMath::DegToRad()*0.7*diro;//RTdir2[MU];
+                    Float_t kva=(spitch2-spitch1)/(RTtime2[MU]-RTtime1[MU]);
+                    Float_t bva=spitch1-kva*RTtime1[MU];
+                    spitch=kva*atime+bva;
+                 }
+                 //Calculate Yaw angle accordingly with fit, see picture FitYaw.jpg
+                 Double_t yaw=0.00001;  // temprary not zero to avoid problem with tranzition from Euler angles to orientation matrix
+                 if(TMath::Abs(tlat)<70)
+                   yaw = -3.7e-8*tlat*tlat*tlat*tlat + 1.4e-7*tlat*tlat*tlat - 0.0005*tlat*tlat - 0.00025*tlat + 3.6;
+                 yaw = diro*yaw; //because should be different sign for ascending and descending orbits!
+                 orbitalinfo->phi=yaw;
+                 if(TMath::Abs(bank)>0.5 && TMath::Abs(yaw-orbitalinfo->phi)<3.0) yaw=orbitalinfo->phi;
+ //              Qiji = PO->EulertoEci(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,bank,yaw,spitch);           // 10RED CHECK
+                 Qij = PO->EulertoEci(eCi.getPos().m_x,eCi.getPos().m_y,eCi.getPos().m_z,eCi.getVel().m_x,eCi.getVel().m_y,eCi.getVel().m_z,bank,yaw,spitch);            // STANDARD
+                 orbitalinfo->qkind = 1;
+              }
+           //Qij = PO->GEOtoECI(Dij,orbitalinfo->absTime,orbitalinfo->lat,orbitalinfo->lon); // to convert from Dij to Qij
+         } // end of if(atime<RTtime1[0]
+         } // end of (((orbitalinfo->TimeGap>60.0 && TMath...
+        } // end of MU~=0
+         TMatrixD qij = PO->ColPermutation(Qij);
+         TMatrixD Fij = PO->ECItoGreenwich(Qij,orbitalinfo->absTime);
          TMatrixD Gij = PO->ColPermutation(Fij);
-         TMatrixD Dij = PO->GreenwichtoGEO(orbitalinfo->lat,orbitalinfo->lon,Fij);
+         Dij = PO->ECItoGEO(Qij,orbitalinfo->absTime,orbitalinfo->lat,orbitalinfo->lon);
          TMatrixD Iij = PO->ColPermutation(Dij);
-         //
+         TVector3 SP = PO->GetSunPosition(orbitalinfo->absTime);
+         // go to Pamela reference frame from Resurs reference frame
+         Float_t tmpy = SP.Y();
+         SP.SetY(SP.Z());
+         SP.SetZ(-tmpy);
+         TVector3 SunZenith;
+         SunZenith.SetMagThetaPhi(1,23.439281*TMath::DegToRad(),TMath::Pi()/2.);
+         TVector3 SunMag = -SP;
+         SunMag.Rotate(-45*TMath::DegToRad(),SunZenith);
+         tmpy=SunMag.Y();
+         SunMag.SetY(SunMag.Z());
+         SunMag.SetZ(-tmpy);
          orbitalinfo->Iij.ResizeTo(Iij);
          orbitalinfo->Iij = Iij;
          //
-Line 1273 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1781 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //      orbitalinfo->pamBangle = (Float_t)PO->GetPitchAngle(A1,A2,A3,Bx,By,Bz);                 // Angle between Pamela's main axiz and B
          //
          if ( debug ) printf(" matrixes done  \n");
-         if ( !standalone && tof->ntrk() > 0 ){
+         if ( !standalone ){
            if ( debug ) printf(" !standalone \n");
            //
+           // Standard tracking algorithm
+           //
            Int_t nn = 0;
+           if ( verbose ) printf(" standard tracking \n");
            for(Int_t nt=0; nt < tof->ntrk(); nt++){
              //
              ToFTrkVar *ptt = tof->GetToFTrkVar(nt);
+             if (debug) cout<<"tof->ntrk() = "<<tof->ntrk()<<"\tptt->trkseqno = "<<ptt->trkseqno<<"\ttrke->ntrk() = "<<trke->ntrk()<<endl;
              Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
              Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
              Double_t E11z = zin[0];
-Line 1287 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1799 
 int OrbitalInfoCore(UInt_t run, TFile *f
              Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
              Double_t E22z = zin[3];
              if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+               TrkTrack *mytrack = trke->GetStoredTrack(ptt->trkseqno);
+               Float_t rig=1/mytrack->GetDeflection();
                Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
-               //              Double_t MyAzim = TMath::RadToDeg()*atan(TMath::Abs(E22y-E11y)/TMath::Abs(E22x-E11x));
+               //
-               //              if(E22x-E11x>=0 && E22y-E11y <0) MyAzim =  360. - MyAzim;
-               //              if(E22x-E11x>=0 && E22y-E11y >=0) MyAzim = MyAzim;
-               //              if(E22x-E11x<0 && E22y-E11y >0) MyAzim = 180. - MyAzim;
-               //              if(E22x-E11x<0 && E22y-E11y <0) MyAzim = 180. + MyAzim;
                Px = (E22x-E11x)/norm;
                Py = (E22y-E11y)/norm;
                Pz = (E22z-E11z)/norm;
-Line 1309 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1819 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
                //
+               // SunPosition in instrumental reference frame
+               TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+               TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+               t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+               t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
                //
-               Double_t omega = PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),cos(orbitalinfo->lon+TMath::Pi()/2)-sin(orbitalinfo->lon+TMath::Pi()/2),cos(orbitalinfo->lon+TMath::Pi()/2)+sin(orbitalinfo->lon+TMath::Pi()/2),1);
                //
-               t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow((1+sqrt(1-pow(orbitalinfo->L,-3/2)*cos(omega))),2));
+               Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+               TVector3 Bxy(0,By,Bz);
+               TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+               Double_t dzeta=Bxy.Angle(Exy);
+               if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+               if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+               // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+               if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+               else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+               if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
                //
                if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
                if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+               if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+               if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
                //
                if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
                //
-Line 1324 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 1852 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->Clear();
                //
-             };
+             }
              //
-           };
+           } // end standard tracking algorithm
+           //
+           // Code for extended tracking algorithm:
+           //
+           if ( hasNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasNucleiTrk \n");
+             for(Int_t nt=0; nt < tcNucleiTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got1\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcNucleiTof->At(nt));
+               if (verbose) cout<<" tcNucleiTof->GetEntries() = "<<tcNucleiTof->GetEntries()<<"\tptt->trkseqno = "<<ptt->trkseqno<<endl;
+               Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
+               Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
+               Double_t E11z = zin[0];
+               Double_t E22x = ptt->xtr_tof[3];//tr->x[3];
+               Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
+               Double_t E22z = zin[3];
+               if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+                 TrkTrack *mytrack = (TrkTrack*)(tcNucleiTrk->At(ptt->trkseqno));
+                 if ( verbose ) printf(" got tcNucleiTrk \n");
+                 Float_t rig=1/mytrack->GetDeflection();
+                 Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
+                 //
+                 Px = (E22x-E11x)/norm;
+                 Py = (E22y-E11y)/norm;
+                 Pz = (E22z-E11z)/norm;
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 TMatrixD Eij = PO->PamelatoGEO(Iij,Px,Py,Pz);
+                 t_orb->Eij.ResizeTo(Eij);
+                 t_orb->Eij = Eij;
+                 //
+                 TMatrixD Sij = PO->PamelatoGEO(Gij,Px,Py,Pz);
+                 t_orb->Sij.ResizeTo(Sij);
+                 t_orb->Sij = Sij;
+                 //
+                 t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
+                 //
+                 // SunPosition in instrumental reference frame
+                 TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+                 TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+                 t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+                 t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
+                 //
+                 //
+                 Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+                 TVector3 Bxy(0,By,Bz);
+                 TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+                 Double_t dzeta=Bxy.Angle(Exy);
+                 if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+                 if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
+                 //
+                 if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
+                 if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+                 if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+                 if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
+                 //
+                 if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
+                 //
+                 TClonesArray &tt1 = *torbNucleiTrk;
+                 new(tt1[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           } // end standard tracking algorithm: nuclei
+           if ( hasExtNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtNucleiTrk \n");
+             for(Int_t nt=0; nt < tcExtNucleiTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got2\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtNucleiTof->At(nt));
+               if (verbose) cout<<" tcExtNucleiTof->GetEntries() = "<<tcExtNucleiTof->GetEntries()<<"\tptt->trkseqno = "<<ptt->trkseqno<<endl;
+               Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
+               Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
+               Double_t E11z = zin[0];
+               Double_t E22x = ptt->xtr_tof[3];//tr->x[3];
+               Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
+               Double_t E22z = zin[3];
+               if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+                 ExtTrack *mytrack = (ExtTrack*)(tcExtNucleiTrk->At(ptt->trkseqno));
+                 if ( verbose ) printf(" got tcExtNucleiTrk \n");
+                 Float_t rig=1/mytrack->GetDeflection();
+                 Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
+                 //
+                 Px = (E22x-E11x)/norm;
+                 Py = (E22y-E11y)/norm;
+                 Pz = (E22z-E11z)/norm;
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 TMatrixD Eij = PO->PamelatoGEO(Iij,Px,Py,Pz);
+                 t_orb->Eij.ResizeTo(Eij);
+                 t_orb->Eij = Eij;
+                 //
+                 TMatrixD Sij = PO->PamelatoGEO(Gij,Px,Py,Pz);
+                 t_orb->Sij.ResizeTo(Sij);
+                 t_orb->Sij = Sij;
+                 //
+                 t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
+                 //
+                 // SunPosition in instrumental reference frame
+                 TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+                 TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+                 t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+                 t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
+                 //
+                 //
+                 Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+                 TVector3 Bxy(0,By,Bz);
+                 TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+                 Double_t dzeta=Bxy.Angle(Exy);
+                 if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+                 if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
+                 //
+                 if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
+                 if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+                 if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+                 if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
+                 //
+                 if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
+                 //
+                 TClonesArray &tt2 = *torbExtNucleiTrk;
+                 new(tt2[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           } // end standard tracking algorithm: nuclei extended
+          if ( hasExtTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtTrk \n");
+             for(Int_t nt=0; nt < tcExtTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got3\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtTof->At(nt));
+               if (verbose) cout<<" tcExtTof->GetEntries() = "<<tcExtTof->GetEntries()<<"\tptt->trkseqno = "<<ptt->trkseqno<<endl;
+               Double_t E11x = ptt->xtr_tof[0]; // tr->x[0];
+               Double_t E11y = ptt->ytr_tof[0]; //tr->y[0];
+               Double_t E11z = zin[0];
+               Double_t E22x = ptt->xtr_tof[3];//tr->x[3];
+               Double_t E22y = ptt->ytr_tof[3];//tr->y[3];
+               Double_t E22z = zin[3];
+               if ( (E11x < 100. && E11y < 100. && E22x < 100. && E22y < 100.) || ptt->trkseqno != -1  ){
+                 ExtTrack *mytrack = (ExtTrack*)(tcExtTrk->At(ptt->trkseqno));
+                 if ( verbose ) printf(" got tcExtTrk \n");
+                 Float_t rig=1/mytrack->GetDeflection();
+                 Double_t norm = sqrt(pow(E22x-E11x,2)+pow(E22y-E11y,2)+pow(E22z-E11z,2));
+                 //
+                 Px = (E22x-E11x)/norm;
+                 Py = (E22y-E11y)/norm;
+                 Pz = (E22z-E11z)/norm;
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 TMatrixD Eij = PO->PamelatoGEO(Iij,Px,Py,Pz);
+                 t_orb->Eij.ResizeTo(Eij);
+                 t_orb->Eij = Eij;
+                 //
+                 TMatrixD Sij = PO->PamelatoGEO(Gij,Px,Py,Pz);
+                 t_orb->Sij.ResizeTo(Sij);
+                 t_orb->Sij = Sij;
+                 //
+                 t_orb->pitch = (Float_t)PO->GetPitchAngle(Eij(0,0),Eij(1,0),Eij(2,0),Bx,By,Bz);
+                 //
+                 // SunPosition in instrumental reference frame
+                 TMatrixD Kij = PO->PamelatoGEO(qij,Px,Py,Pz);
+                 TMatrixD Lij = PO->PamelatoGEO(qij,0,0,1);
+                 t_orb->sunangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),-SP.X(),-SP.Y(),-SP.Z());
+                 t_orb->sunmagangle=(Float_t)PO->GetPitchAngle(Kij(0,0),Kij(1,0),Kij(2,0),SunMag.X(),SunMag.Y(),SunMag.Z());
+                 //
+                 //
+                 Double_t omega = PO->GetPitchAngle(-Eij(0,0),-Eij(1,0),-Eij(2,0),1,0,0) * TMath::DegToRad();
+                 TVector3 Bxy(0,By,Bz);
+                 TVector3 Exy(0,-Eij(1,0),-Eij(2,0));
+                 Double_t dzeta=Bxy.Angle(Exy);
+                 if (-Eij(1,0) < 0) dzeta=2.0*TMath::Pi() - dzeta;
+                 if(debug) cout << "omega = "<<omega*TMath::RadToDeg()<<"\tdzeta = "<<dzeta*TMath::RadToDeg()<<endl;
+                 // Formula from D.F. Smart *, M.A. Shea [2005]; A review of geomagnetic cutoff rigidities for earth-orbiting spacecraft
+                 if(rig>=0) t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 else       t_orb->cutoff = 59.3/(pow(orbitalinfo->L,2)*pow(1+sqrt(1-sin(omega)*sin(TMath::Pi()+dzeta)*pow(cos(orbitalinfo->lat*TMath::DegToRad()),3)),2));
+                 if (debug) cout << "R = " << rig << "\tcutoff = " << t_orb->cutoff << endl;
+                 //
+                 if ( t_orb->pitch != t_orb->pitch ) t_orb->pitch = -1000.;
+                 if ( t_orb->cutoff != t_orb->cutoff ) t_orb->cutoff = -1000.;
+                 if ( t_orb->sunangle != t_orb->sunangle ) t_orb->sunangle = -1000.;
+                 if ( t_orb->sunmagangle != t_orb->sunmagangle ) t_orb->sunmagangle = -1000.;
+                 //
+                 if ( debug ) printf(" orbitalinfo->cutoffsvl %f vitaly %f \n",orbitalinfo->cutoffsvl,t_orb->cutoff);
+                 //
+                 TClonesArray &tt3 = *torbExtTrk;
+                 new(tt3[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           } // end standard tracking algorithm: extended
          } else {
            if ( debug ) printf(" mmm... mode %u standalone  \n",orbitalinfo->mode);
          }
          //
-       } else {
+       } else { // HERE IT MISS ALL CODE FOR EXTENDED TRACKING!
-         if ( !standalone && tof->ntrk() > 0 ){
+         if ( !standalone ){
            //
+           if ( verbose ) printf(" no orb info for tracks \n");
            Int_t nn = 0;
            for(Int_t nt=0; nt < tof->ntrk(); nt++){
              //
-Line 1348 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2104 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->pitch = -1000.;
                //
+               t_orb->sunangle = -1000.;
+               //
+               t_orb->sunmagangle = -1000;
+               //
                t_orb->cutoff = -1000.;
                //
                new(tor[nn]) OrbitalInfoTrkVar(*t_orb);
-Line 1355 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2115 
 int OrbitalInfoCore(UInt_t run, TFile *f
                //
                t_orb->Clear();
                //
-             };
+             }
              //
-           };
+           }
-         };
+           //
-       };
+           // Code for extended tracking algorithm:
+           //
+           if ( hasNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasNucleiTrk \n");
+             for(Int_t nt=0; nt < tcNucleiTof->GetEntries() ; nt++){
+               //
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcNucleiTof->At(nt));
+               if ( ptt->trkseqno != -1  ){
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 t_orb->Eij = 0;
+                 //
+                 t_orb->Sij = 0;
+                 //
+                 t_orb->pitch = -1000.;
+                 //
+                 t_orb->sunangle = -1000.;
+                 //
+                 t_orb->sunmagangle = -1000;
+                 //
+                 t_orb->cutoff = -1000.;
+                 //
+                 TClonesArray &tz1 = *torbNucleiTrk;
+                 new(tz1[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           }
+           if ( hasExtNucleiTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtNucleiTrk \n");
+             for(Int_t nt=0; nt < tcExtNucleiTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got2\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtNucleiTof->At(nt));
+               if ( ptt->trkseqno != -1  ){
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 t_orb->Eij = 0;
+                 //
+                 t_orb->Sij = 0;
+                 //
+                 t_orb->pitch = -1000.;
+                 //
+                 t_orb->sunangle = -1000.;
+                 //
+                 t_orb->sunmagangle = -1000;
+                 //
+                 t_orb->cutoff = -1000.;
+                 //
+                 TClonesArray &tz2 = *torbExtNucleiTrk;
+                 new(tz2[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           }
+           if ( hasExtTrk ){
+             Int_t ttentry = 0;
+             if ( verbose ) printf(" hasExtTrk \n");
+             for(Int_t nt=0; nt < tcExtTof->GetEntries() ; nt++){
+               //
+               if ( verbose ) printf(" got3\n");
+               ToFTrkVar *ptt = (ToFTrkVar*)(tcExtTof->At(nt));
+               if ( ptt->trkseqno != -1  ){
+                 //
+                 t_orb->trkseqno = ptt->trkseqno;
+                 //
+                 t_orb->Eij = 0;
+                 //
+                 t_orb->Sij = 0;
+                 //
+                 t_orb->pitch = -1000.;
+                 //
+                 t_orb->sunangle = -1000.;
+                 //
+                 t_orb->sunmagangle = -1000;
+                 //
+                 t_orb->cutoff = -1000.;
+                 //
+                 TClonesArray &tz3 = *torbExtNucleiTrk;
+                 new(tz3[ttentry]) OrbitalInfoTrkVar(*t_orb);
+                 ttentry++;
+                 //
+                 t_orb->Clear();
+                 //
+               }
+               //
+             }
+           }
+         }
+       } // if( orbitalinfo->TimeGap>0){
        //
        // Fill the class
        //
        OrbitalInfotr->Fill();
        //
+       //      tor.Clear("C"); // memory leak?
+       tor.Delete(); // memory leak?
        delete t_orb;
        //
-     }; // loop over the events in the run
+       //      printf(" q0 size %i q0 capacity %i \n",(int)q0.size(),(int)q0.capacity());
+     } // loop over the events in the run
      //
      // Here you may want to clear some variables before processing another run
      //
-     //gStyle->SetOptStat(000000);
+     //    OrbitalInfotr->FlushBaskets();
-     //gStyle->SetPalette(1);
-     /*TCanvas* c1 = new TCanvas("c1","",1200,800);
-     //c1->Divide(1,4);
-     c1->cd(1);
-     //q0testing->Draw("colz");
-     //c1->cd(2);
-     //q1testing->Draw("colz");
-     //c1->cd(3);
-     Pitchtesting->Draw("colz");
-     //c1->cd(4);
-     //q3testing->Draw("colz");
-     c1->SaveAs("9.Rollhyst.png");
-     delete c1;*/
      if ( verbose ) printf(" Clear before new run \n");
      delete dbtime;
-Line 1403 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2255 
 int OrbitalInfoCore(UInt_t run, TFile *f
      if ( verbose ) printf(" Clear before new run4 \n");
      if ( RYPang_lower ) delete RYPang_lower;
-     if ( l0tr ) l0tr->Delete();
+     if ( l0tr ){
+       if ( verbose ) printf(" delete l0tr\n");
+       l0tr->Delete();
+       l0tr = 0;
+     }
+     //    if ( l0head ){
+     //      printf(" delete l0head\n");
+     //  l0head->Reset();
+     //  delete l0head;
+     //  printf(" delete l0head done\n");
+     //  l0head = 0;
+     // }
+     if (eh) {
+       if ( verbose ) printf(" delete eh\n");
+       delete eh;
+       eh = 0;
+     }
+     if ( verbose ) printf(" close file \n");
+     if ( l0File ) l0File->Close("R");
      if ( verbose ) printf(" End run \n");
-   }; // process all the runs
+     q0.clear();
+     q1.clear();
+     q2.clear();
+     q3.clear();
+     qtime.clear();
+     qPitch.clear();
+     qRoll.clear();
+     qYaw.clear();
+     qmode.clear();
+     if (ch){
+       if ( verbose ) printf(" delete ch\n");
+       ch->Delete();
+       ch = 0;
+     }
+   } // process all the runs    <===
+   if ( debug ){
+     printf("AFTER LOOP ON RUNs\n");
+     gObjectTable->Print();
+   }
+   //
    if (verbose) printf("\n Finished processing data \n");
    //
   closeandexit:
-Line 1430 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2320 
 int OrbitalInfoCore(UInt_t run, TFile *f
          //
          // copy orbitalinfoclone to OrbitalInfo
          //
-         orbitalinfo->Clear();
+         //      orbitalinfo->Clear();
          //
          memcpy(&orbitalinfo,&orbitalinfoclone,sizeof(orbitalinfoclone));
          //
-Line 1446 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2336 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    // Close files, delete old tree(s), write and close level2 file
    //
    if ( l0File ) l0File->Close();
    if ( myfold ) gSystem->Unlink(tempname.str().c_str());
    //
-Line 1474 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2365 
 int OrbitalInfoCore(UInt_t run, TFile *f
    if ( gltle ) delete gltle;
    if ( glparam ) delete glparam;
    if ( glparam2 ) delete glparam2;
-   if ( glparam3 ) delete glparam3;
    if (verbose) printf("\n Exiting3...\n");
    if ( glroot ) delete glroot;
    if (verbose) printf("\n Exiting4...\n");
    if ( runinfo ) runinfo->Close();
    if ( runinfo ) delete runinfo;
+   if ( tcNucleiTrk ){
+     tcNucleiTrk->Delete();
+     delete tcNucleiTrk;
+     tcNucleiTrk = NULL;
+   }
+   if ( tcExtNucleiTrk ){
+     tcExtNucleiTrk->Delete();
+     delete tcExtNucleiTrk;
+     tcExtNucleiTrk = NULL;
+   }
+   if ( tcExtTrk ){
+     tcExtTrk->Delete();
+     delete tcExtTrk;
+     tcExtTrk = NULL;
+   }
+   if ( tcNucleiTof ){
+     tcNucleiTof->Delete();
+     delete tcNucleiTof;
+     tcNucleiTof = NULL;
+   }
+   if ( tcExtNucleiTof ){
+     tcExtNucleiTof->Delete();
+     delete tcExtNucleiTof;
+     tcExtNucleiTof = NULL;
+   }
+   if ( tcExtTof ){
+     tcExtTof->Delete();
+     delete tcExtTof;
+     tcExtTrk = NULL;
+   }
+   if ( tof ) delete tof;
+   if ( trke ) delete trke;
    if ( debug ){
    cout << "1   0x" << OrbitalInfotr << endl;
    cout << "2   0x" << OrbitalInfotrclone << endl;
-Line 1491 
 int OrbitalInfoCore(UInt_t run, TFile *f
+Line 2417 
 int OrbitalInfoCore(UInt_t run, TFile *f
    //
    if ( debug )  file->ls();
    //
+   if ( debug ){
+     printf("BEFORE EXITING\n");
+     gObjectTable->Print();
+   }
    if(code < 0)  throw code;
    return(code);
  }
-Line 1595 
 void inclresize(vector<Double_t>& t,vect
+Line 2525 
 void inclresize(vector<Double_t>& t,vect
    Yaw.resize(sizee);
  }
- //Find fitting sine functions for q0,q1,q2,q3 and Yaw-angle;
+ // geomagnetic calculation staff
- void sineparam(vector<Sine>& qsine, vector<Double_t>& qtime, vector<Float_t>& q, vector<Float_t>& Roll, vector<Float_t>& Pitch, Float_t limsin){
-   UInt_t mulast = 0;
+ void GM_ScanIGRF(TSQLServer *dbc, GMtype_Data *G0, GMtype_Data *G1, GMtype_Data *H1)
-   UInt_t munow = 0;
+ {
-   UInt_t munext = 0;
+   GL_PARAM *glp = new GL_PARAM();
-   Bool_t increase = false;
+   Int_t parerror=glp->Query_GL_PARAM(1,304,dbc); // parameters stored in DB in GL_PRAM table
-   Bool_t decrease = false;
+   if ( parerror<0 ) {
-   Bool_t Max_is_defined = false;
+     throw -902;
-   Bool_t Start_point_is_defined = false;
+   }
-   Bool_t Period_is_defined = false;
+         /*This function scans inputs G0, G1, and H1 of the IGRF table into 3 data arrays*/
-   Bool_t Large_gap = false;
+   //    TString SATH="/data03/Malakhov/pam9Malakhov/installed10/calib/orb-param/";
-   Bool_t normal_way = true;
+         int i;
-   Bool_t small_gap_on_ridge = false;
+         double temp;
-   Double_t t1 = 0;
+         char buffer[200];
-   Double_t t1A = 0;
+         FILE *IGRF;
-   Int_t sinesize = 0;
+         IGRF = fopen((glp->PATH+glp->NAME).Data(), "r");
-   Int_t nfi = 0;
+         //      IGRF = fopen(PATH+"IGRF.tab", "r");
-   for(UInt_t mu = 0;mu<qtime.size();mu++){
+         G0->size = 25;
-     //cout<<"Roll["<<mu<<"] = "<<Roll[mu]<<endl;
+         G1->size = 25;
-     if(TMath::Abs(Roll[mu])<1. && TMath::Abs(Pitch[mu])<1. && TMath::Abs(q[mu])<limsin){
+         H1->size = 25;
-     //cout<<"q["<<mu<<endl<<"] = "<<q[mu]<<endl;
+         for( i = 0; i < 4; i++)
-     if(mulast!=0 && munow!=0 && munext!=0){mulast=munow;munow=munext;munext=mu;}
+         {
-     if(munext==0 && munow!=0)munext=mu;
+                 fgets(buffer, 200, IGRF);
-     if(munow==0 && mulast!=0)munow=mu;
-     if(mulast==0)mulast=mu;
-     //cout<<"mulast = "<<mulast<<"\tmunow = "<<munow<<"\tmunext = "<<munext<<endl;
-     //Int_t ref;
-     //cin>>ref;
-     if(TMath::Abs(q[munow])>TMath::Abs(q[mulast]) && TMath::Abs(q[munow])>TMath::Abs(q[munext]) && q[mulast]*q[munext]>0 && qtime[munext]-qtime[mulast]>400)small_gap_on_ridge = true;
-     if(munext>mulast && (qtime[munext]-qtime[mulast]>=2000 || qtime[munext]-qtime[mulast]<0)){if(Large_gap){normal_way = false;Large_gap = false;}else{Large_gap = true;normal_way = false;}}else normal_way = true;
-     //if(normal_way)cout<<"Normal_Way"<<endl;
-     if(Large_gap || small_gap_on_ridge){
-       //cout<<"Large gap..."<<endl;
-       //if(small_gap_on_ridge)cout<<"small gap..."<<endl;
-       //cout<<"q["<<mulast<<"] = "<<q[mulast]<<"\tq["<<munow<<"] = "<<q[munow]<<"\tq["<<munext<<"] = "<<q[munext]<<endl;
-       //cout<<"qtime["<<mulast<<"] = "<<qtime[mulast]<<"\tqtime["<<munow<<"] = "<<qtime[munow]<<"\tqtime["<<munext<<"] = "<<qtime[munext]<<endl;
-       increase = false;
-       decrease = false;
-       if(nfi>0){
-         qsine.resize(qsine.size()-1);
-         sinesize = qsine.size();
-         //cout<<"nfi was larger then zero"<<endl;
-       }else{
-         //cout<<"nfi was not larger then zero :( nfi = "<<nfi<<endl;
-         //cout<<"qsine.size = "<<qsine.size()<<endl;
-         if(!Period_is_defined){
-           //cout<<"Period was defined"<<endl;
-           if(qsine.size()>1){
-             qsine[sinesize-1].b = qsine[sinesize-2].b;
-             qsine[sinesize-1].c = qsine[sinesize-2].c;
-           }else{
-             qsine[sinesize-1].b = TMath::Pi()/1591.54;
-             qsine[sinesize-1].c = qsine[sinesize-1].startPoint;
-           }
-         }
-         if(!Max_is_defined){
-           //cout<<"Max was already defined"<<endl;
-           if(qsine.size()>1)qsine[sinesize-1].A = qsine[sinesize-2].A;else qsine[sinesize-1].A = limsin;
-         }
-         qsine[sinesize-1].NeedFit = true;
-       }
-       qsine[sinesize-1].finishPoint = qtime[munow];
-       //cout<<"finish point before large gap = "<<qtime[munow]<<endl;
-       nfi = 0;
-       Max_is_defined = false;
-       Start_point_is_defined = false;
-       Period_is_defined = false;
-       small_gap_on_ridge = false;
-     }
-     //cout<<"Slope "<<increase<<"\t"<<decrease<<endl;
-     //cout<<"mulast = "<<mulast<<"\tmunow = "<<munow<<"\tmunext = "<<munext<<endl;
-     if((munext>munow) && (munow>mulast) && normal_way){
-       if(!increase && !decrease){
-         //cout<<"Normal way have started"<<endl;
-         qsine.resize(qsine.size()+1);
-         sinesize = qsine.size();
-         qsine[sinesize-1].startPoint=qtime[mulast];
-         if(q[munext]>q[munow] && q[munow]>q[mulast]) increase = true;
-         if(q[munext]<q[munow] && q[munow]<q[mulast]) decrease = true;
-       }
-       //if(TMath::Abs(q[munow])>TMath::Abs(q[mulast]) && TMath::Abs(q[munow])>TMath::Abs(q[munext]) && TMath::Abs(q[munow])>limsin && qtime[munow]-qtime[mulast]>=400 || qtime[munext]-qtime[munow]>=400){small_gap_on_ridge = true;mu--;continue;}
-       if(TMath::Abs(q[munow])>TMath::Abs(q[mulast]) && TMath::Abs(q[munow])>TMath::Abs(q[munext]) && TMath::Abs(q[munow])>0.9*limsin && qtime[munow]-qtime[mulast]<400 && qtime[munext]-qtime[munow]<400){
-         //cout<<"Max point is qtime = "<<qtime[munow]<<"\tq = "<<q[munow]<<endl;
-         if(q[munow]>q[mulast]){
-           increase = false;
-           decrease = true;
-         }
-         if(q[munow]<q[mulast]){
-           increase = true;
-           decrease = false;
          }
-         if(Max_is_defined && !Start_point_is_defined){
+         fscanf(IGRF, "g 1 0 %lf ", &G0->element[0]);
-           Double_t qPer = qtime[munow]-t1A;
+         for(i = 1; i <= 22; i++)
-           if(qPer>1000){
+         {
-             //cout<<"qsine["<<sinesize-1<<"] = "<<qPer<<" = "<<qtime[munow]<<" - "<<t1A<<"\tlim = "<<limsin<<endl;
+                 fscanf(IGRF ,"%lf ", &G0->element[i]);
-             qsine[sinesize-1].b=TMath::Pi()/qPer;
-             if(decrease)qsine[sinesize-1].c=-qsine[sinesize-1].b*t1A;
-             if(increase)qsine[sinesize-1].c=-qsine[sinesize-1].b*(t1A-qPer);
-             Period_is_defined = true;
-           }
          }
-         Max_is_defined = true;
+         fscanf(IGRF ,"%lf\n", &temp);
-         qsine[sinesize-1].A = TMath::Abs(q[munow]);
+         G0->element[23] = temp * 5 + G0->element[22];
-         if(Start_point_is_defined && Period_is_defined){
+         G0->element[24] = G0->element[23] + 5 * temp;
-           qsine[sinesize-1].finishPoint = qtime[munow];
+         fscanf(IGRF, "g 1 1 %lf ", &G1->element[0]);
-           nfi++;
+         for(i = 1; i <= 22; i++)
-           qsine[sinesize-1].NeedFit = false;
+         {
-           Max_is_defined = false;
+                 fscanf( IGRF, "%lf ", &G1->element[i]);
-           Start_point_is_defined = false;
-           Period_is_defined = false;
-           qsine.resize(qsine.size()+1);
-           sinesize = qsine.size();
-           qsine[sinesize-1].startPoint = qtime[munow];
          }
-         if(!Start_point_is_defined) t1A=qtime[munow];
+         fscanf(IGRF, "%lf\n", &temp);
-       }
+         G1->element[23] = temp * 5 + G1->element[22];
-       //if((q[munow]>=0 && q[mulast]<=0) || (q[munow]<=0 && q[mulast]>=0))cout<<"cross zero point diference = "<<qtime[munext] - qtime[mulast]<<"\tqlast = "<<qtime[mulast]<<"\tqnow = "<<qtime[munow]<<"\tqnext = "<<qtime[munext]<<endl;
+         G1->element[24] = temp * 5 + G1->element[23];
-       if(((q[munow]>=0 && q[mulast]<=0) || (q[munow]<=0 && q[mulast]>=0)) && qtime[munow]-qtime[mulast]<2000 && qtime[munext]-qtime[munow]<2000){
+         fscanf(IGRF, "h 1 1 %lf ", &H1->element[0]);
-         Double_t tcrosszero = 0;
+         for(i = 1; i <= 22; i++)
-         //cout<<"cross zero point...qtime = "<<qtime[munow]<<endl;
+         {
-         if(q[munow]==0.) tcrosszero = qtime[munow];else
+                 fscanf( IGRF, "%lf ", &H1->element[i]);
-           if(q[mulast]==0.)tcrosszero = qtime[mulast];else{
-             Double_t k_ = (q[munow]-q[mulast])/(qtime[munow]-qtime[mulast]);
-             Double_t b_ = q[munow]-k_*qtime[munow];
-             tcrosszero = -b_/k_;
-           }
-         if(Start_point_is_defined){
-           //cout<<"Start Point allready defined"<<endl;
-           Double_t qPer = tcrosszero - t1;
-           qsine[sinesize-1].b = TMath::Pi()/qPer;
-           //cout<<"qsine["<<sinesize-1<<"].b = "<<TMath::Pi()/qPer<<endl;
-           Period_is_defined = true;
-           Float_t x0 = 0;
-           if(decrease)x0 = t1;
-           if(increase)x0 = tcrosszero;
-           qsine[sinesize-1].c = -qsine[sinesize-1].b*x0;
-           if(Max_is_defined){
-             //cout<<"Max was previous defined"<<endl;
-             qsine[sinesize-1].finishPoint = qtime[munow];
-             nfi++;
-             qsine[sinesize-1].NeedFit = false;
-             Max_is_defined = false;
-             t1 = tcrosszero;
-             Start_point_is_defined = true;
-             Period_is_defined = false;
-             qsine.resize(qsine.size()+1);
-             sinesize = qsine.size();
-             qsine[sinesize-1].startPoint = qtime[munow];
-           }
-         }else{
-           t1 = tcrosszero;
-           Start_point_is_defined = true;
          }
-       }
+         fscanf(IGRF, "%lf\n", &temp);
-     }
+         H1->element[23] = temp * 5 + H1->element[22];
-     }
+         H1->element[24] = temp * 5 + H1->element[23];
+   if ( glp ) delete glp;
+   /*
+   printf("############################## SCAN IGRF ######################################\n");
+   printf("       G0      G1     H1\n");
+   printf(" size  %10i %10i %10i \n",G0->size,G1->size,H1->size);
+   for ( i = 0; i < 30; i++){
+     printf("%5i  %10.2f %10.2f %10.2f \n",i,G0->element[i],G1->element[i],H1->element[i]);
+   }
+   printf("###############################################################################\n");
+   */
+ } /*GM_ScanIGRF*/
+ void GM_SetIGRF(Int_t isSecular, TString ifile1, TString ifile2, GMtype_Data *G0, GMtype_Data *G1, GMtype_Data *H1)
+ {
+   /*This function scans inputs G0, G1, and H1 of the IGRF table into 3 data arrays*/
+   int i;
+   double temp,temp2;
+   int it1,it2;
+   char buffer[200];
+   FILE *IGRF;
+   G0->size = 2;
+   G1->size = 2;
+   H1->size = 2;
+   for( i = 0; i < 30; i++){
+     G0->element[i] = 0.;
+     G1->element[i] = 0.;
+     H1->element[i] = 0.;
    }
-   //cout<<"FINISH SINE INTERPOLATION FUNCTION..."<<endl<<endl;
+   IGRF = fopen(ifile1.Data(), "r");
- }
+   for( i = 0; i < 2; i++){
+     fgets(buffer, 200, IGRF);
+   }
+   fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G0->element[0],&temp);
+   fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G1->element[0],&H1->element[0]);
+   fclose(IGRF);
+   IGRF = fopen(ifile2.Data(), "r");
+   for( i = 0; i < 2; i++){
+     fgets(buffer, 200, IGRF);
+   }
+   if ( isSecular ){
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2,&temp,&temp2);
+     G0->element[1] = temp * 5. + G0->element[0];
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2,&temp,&temp2);
+     G1->element[1] = temp * 5. + G1->element[0];
+     H1->element[1] = temp2 * 5. + H1->element[0];
+   } else {
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G0->element[1],&temp);
+     fscanf(IGRF, "%3i%3i%12lf%11lf",&it1,&it2, &G1->element[1],&H1->element[1]);
+   }
+   fclose(IGRF);
+   /*
+   printf("############################## SCAN IGRF ######################################\n");
+   printf("       G0      G1     H1\n");
+   printf(" size  %10i %10i %10i \n",G0->size,G1->size,H1->size);
+   for ( i = 0; i < 30; i++){
+     printf("%5i  %10.2f %10.2f %10.2f \n",i,G0->element[i],G1->element[i],H1->element[i]);
+   }
+   printf("###############################################################################\n");
+   */
+ } /*GM_ScanIGRF*/
+ void GM_SetEllipsoid(GMtype_Ellipsoid *Ellip)
+ {
+         /*This function sets the WGS84 reference ellipsoid to its default values*/
+         Ellip->a        =                       6378.137; /*semi-major axis of the ellipsoid in */
+         Ellip->b        =                       6356.7523142;/*semi-minor axis of the ellipsoid in */
+         Ellip->fla      =                       1/298.257223563;/* flattening */
+         Ellip->eps      =                       sqrt(1- ( Ellip->b *    Ellip->b) / (Ellip->a * Ellip->a ));  /*first eccentricity */
+         Ellip->epssq    =                       (Ellip->eps * Ellip->eps);   /*first eccentricity squared */
+         Ellip->re       =                       6371.2;/* Earth's radius */
+ } /*GM_SetEllipsoid*/
+ void GM_EarthCartToDipoleCartCD(GMtype_Pole Pole, GMtype_CoordCartesian EarthCoord, GMtype_CoordCartesian *DipoleCoords)
+ {
+         /*This function converts from Earth centered cartesian coordinates to dipole centered cartesian coordinates*/
+         double X, Y, Z, CosPhi, SinPhi, CosLambda, SinLambda;
+         CosPhi = cos(TMath::DegToRad()*Pole.phi);
+         SinPhi = sin(TMath::DegToRad()*Pole.phi);
+         CosLambda = cos(TMath::DegToRad()*Pole.lambda);
+         SinLambda = sin(TMath::DegToRad()*Pole.lambda);
+         X = EarthCoord.x;
+         Y = EarthCoord.y;
+         Z = EarthCoord.z;
+         /*These equations are taken from a document by Wallace H. Campbell*/
+         DipoleCoords->x = X * CosPhi * CosLambda + Y * CosPhi * SinLambda - Z * SinPhi;
+         DipoleCoords->y = -X * SinLambda + Y * CosLambda;
+         DipoleCoords->z = X * SinPhi * CosLambda + Y * SinPhi * SinLambda + Z * CosPhi;
+ } /*GM_EarthCartToDipoleCartCD*/
+ void GM_GeodeticToSpherical(GMtype_Ellipsoid Ellip, GMtype_CoordGeodetic CoordGeodetic, GMtype_CoordSpherical *CoordSpherical)
+ {
+         double CosLat, SinLat, rc, xp, zp; /*all local variables */
+         /*
+         ** Convert geodetic coordinates, (defined by the WGS-84
+         ** reference ellipsoid), to Earth Centered Earth Fixed Cartesian
+         ** coordinates, and then to spherical coordinates.
+         */
+         CosLat = cos(TMath::DegToRad()*CoordGeodetic.phi);
+         SinLat = sin(TMath::DegToRad()*CoordGeodetic.phi);
+         /* compute the local radius of curvature on the WGS-84 reference ellipsoid */
+         rc = Ellip.a / sqrt(1.0 - Ellip.epssq * SinLat * SinLat);
+         /* compute ECEF Cartesian coordinates of specified point (for longitude=0) */
+         xp = (rc + CoordGeodetic.HeightAboveEllipsoid) * CosLat;
+         zp = (rc*(1.0 - Ellip.epssq) + CoordGeodetic.HeightAboveEllipsoid) * SinLat;
+         /* compute spherical radius and angle lambda and phi of specified point */
+         CoordSpherical->r = sqrt(xp * xp + zp * zp);
+         CoordSpherical->phig = TMath::RadToDeg()*asin(zp / CoordSpherical->r);     /* geocentric latitude */
+         CoordSpherical->lambda = CoordGeodetic.lambda;                   /* longitude */
+ } /*GM_GeodeticToSpherical*/
+ void GM_PoleLocation(GMtype_Model Model, GMtype_Pole *Pole)
+ {
+         /*This function finds the location of the north magnetic pole in spherical coordinates.  The equations are
+         **from Wallace H. Campbell's Introduction to Geomagnetic Fields*/
+         Pole->phi = TMath::RadToDeg()*-atan(sqrt(Model.h1 * Model.h1 + Model.g1 * Model.g1)/Model.g0);
+         Pole->lambda = TMath::RadToDeg()*atan(Model.h1/Model.g1);
+ } /*GM_PoleLocation*/
+ void GM_SphericalToCartesian(GMtype_CoordSpherical CoordSpherical, GMtype_CoordCartesian *CoordCartesian)
+ {
+         /*This function converts spherical coordinates into Cartesian coordinates*/
+         double CosPhi = cos(TMath::DegToRad()*CoordSpherical.phig);
+         double SinPhi = sin(TMath::DegToRad()*CoordSpherical.phig);
+         double CosLambda = cos(TMath::DegToRad()*CoordSpherical.lambda);
+         double SinLambda = sin(TMath::DegToRad()*CoordSpherical.lambda);
+         CoordCartesian->x = CoordSpherical.r * CosPhi * CosLambda;
+         CoordCartesian->y = CoordSpherical.r * CosPhi * SinLambda;
+         CoordCartesian->z = CoordSpherical.r * SinPhi;
+ } /*GM_SphericalToCartesian*/
+ void GM_TimeAdjustCoefs(Float_t year, Float_t jyear, GMtype_Data g0d, GMtype_Data g1d, GMtype_Data h1d, GMtype_Model *Model)
+ {
+         /*This function calls GM_LinearInterpolation for the coefficients to estimate the value of the
+         **coefficient for the given date*/
+         int index;
+         double x;
+         index = (year - GM_STARTYEAR) / 5;
+         x = (jyear - GM_STARTYEAR) / 5.;
+         Model->g0 = GM_LinearInterpolation(index, index+1, g0d.element[index], g0d.element[index+1], x);
+         Model->g1 = GM_LinearInterpolation(index, index+1, g1d.element[index], g1d.element[index+1], x);
+         Model->h1 = GM_LinearInterpolation(index, index+1, h1d.element[index], h1d.element[index+1], x);
+ } /*GM_TimeAdjustCoefs*/
+ double GM_LinearInterpolation(double x1, double x2, double y1, double y2, double x)
+ {
+         /*This function takes a linear interpolation between two given points for x*/
+         double weight, y;
+         weight  = (x - x1) / (x2 - x1);
+         y = y1 * (1. - weight) + y2 * weight;
+         //        printf(" x1 %f x2 %f y1 %f y2 %f x %f ==> y %f \n",x1,x2,y1,y2,x,y);
+         return y;
+ }/*GM_LinearInterpolation*/
+ void GM_CartesianToSpherical(GMtype_CoordCartesian CoordCartesian, GMtype_CoordSpherical *CoordSpherical)
+ {
+         /*This function converts a point from Cartesian coordinates into spherical coordinates*/
+         double X, Y, Z;
+         X = CoordCartesian.x;
+         Y = CoordCartesian.y;
+         Z = CoordCartesian.z;
+         CoordSpherical->r = sqrt(X * X + Y * Y + Z * Z);
+         CoordSpherical->phig = TMath::RadToDeg()*asin(Z / (CoordSpherical->r));
+         CoordSpherical->lambda = TMath::RadToDeg()*atan2(Y, X);
+ } /*GM_CartesianToSpherical*/

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Removed from v.1.67
 


changed lines


 
Added in v.1.82
 Legend:



Removed from v.1.67
 


changed lines


 
Added in v.1.82
-Removed from v.1.67
+Added in v.1.82

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