/[PAMELA software]/DarthVader/NDLevel2/src/NDCore.cpp
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Diff of /DarthVader/NDLevel2/src/NDCore.cpp

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revision 1.3 by mocchiut, Fri Aug 4 10:31:28 2006 UTC revision 1.31 by mocchiut, Tue Oct 14 14:07:17 2014 UTC
# Line 13  Line 13 
13  #include <TClassEdit.h>  #include <TClassEdit.h>
14  #include <TObject.h>  #include <TObject.h>
15  #include <TList.h>  #include <TList.h>
16  #include <TArrayL.h>  #include <TArrayI.h>
17  #include <TSystem.h>  #include <TSystem.h>
18  #include <TSystemDirectory.h>  #include <TSystemDirectory.h>
19  #include <TString.h>  #include <TString.h>
# Line 26  Line 26 
26  #include <stdlib.h>  #include <stdlib.h>
27  #include <math.h>  #include <math.h>
28  //  //
29    // RunInfo header
30    //
31    #include <RunInfo.h>
32    #include <GLTables.h>
33    //
34  // YODA headers  // YODA headers
35  //  //
36  #include <PamelaRun.h>  #include <PamelaRun.h>
 #include <RegistryEvent.h>  
37  #include <PscuHeader.h>  #include <PscuHeader.h>
38  #include <PscuEvent.h>  #include <PscuEvent.h>
39  #include <EventHeader.h>  #include <EventHeader.h>
 #include <RegistryEvent.h>  
40  #include <physics/neutronDetector/NeutronEvent.h>  #include <physics/neutronDetector/NeutronEvent.h>
41  #include <physics/neutronDetector/NeutronRecord.h>  #include <physics/neutronDetector/NeutronRecord.h>
 //#include <yodaUtility.h>  
42  //  //
43  // RunInfo header  // RunInfo header
44  //  //
45  #include <RunInfo.h>  //#include <RunInfo.h>
46  #include <GLTables.h>  //#include <GLTables.h>
47  //  //
48  // This program headers  // This program headers
49  //  //
# Line 55  using namespace std; Line 57  using namespace std;
57  // CORE ROUTINE  // CORE ROUTINE
58  //  //
59  //  //
60  int NDCore(ULong64_t run, TFile *file, TSQLServer *dbc, Int_t NDargc, char *NDargv[]){  int NDCore(UInt_t run, TFile *file, GL_TABLES *glt, Int_t NDargc, char *NDargv[]){
   //    
   Int_t i = 0;  
61    //    //
62    TString processFolder = "NDFolder";    // Set these to true to have a verbose output.
   //  
   // Set these to true to have a very verbose output.  
63    //    //
64    Bool_t debug = false;    Bool_t debug = false;
   //  
65    Bool_t verbose = false;    Bool_t verbose = false;
66    //    //
67      // Output directory is the working directoy.
68      //
69      const char* outDir = gSystem->DirName(gSystem->DirName(file->GetPath()));
70      //  
71      Int_t i = 0;
72      TString processFolder = Form("NDFolder_%u",run);
73    if ( NDargc > 0 ){    if ( NDargc > 0 ){
74      i = 0;      i = 0;
75      while ( i < NDargc ){      while ( i < NDargc ){
# Line 81  int NDCore(ULong64_t run, TFile *file, T Line 84  int NDCore(ULong64_t run, TFile *file, T
84          verbose = true;          verbose = true;
85        };        };
86        if ( (!strcmp(NDargv[i],"--debug")) || (!strcmp(NDargv[i],"-g")) ) {        if ( (!strcmp(NDargv[i],"--debug")) || (!strcmp(NDargv[i],"-g")) ) {
87            debug = true;
88          verbose= true;          verbose= true;
89        };        };
90        i++;        i++;
91      };      };
92    };    };
93    //    //
94    const char* outDir = gSystem->DirName(gSystem->DirName(file->GetPath()));  
95    // Variables for level2    // Variables for level2
96    //    //
97    TTree *NDtr = 0;    TTree *NDtr = 0;
98    Long64_t nevents = 0LL;    UInt_t nevents = 0;
99    //    //
100    // variables needed to reprocess data    // Variables needed to reprocess data
101    //    //
102    TString NDversion;    TString NDversion;
103    ItoRunInfo *runinfo = 0;    ItoRunInfo *runinfo = 0;
104    TArrayL *runlist = 0;    TArrayI *runlist = 0;
105    TTree *NDtrclone = 0;    TTree *NDtrclone = 0;
106    Bool_t reproc = false;    Bool_t reproc = false;
107    Bool_t reprocall = false;    Bool_t reprocall = false;
# Line 106  int NDCore(ULong64_t run, TFile *file, T Line 110  int NDCore(ULong64_t run, TFile *file, T
110    UInt_t numbofrun = 0;    UInt_t numbofrun = 0;
111    stringstream ftmpname;    stringstream ftmpname;
112    TString fname;    TString fname;
113    Long64_t totfileentries = 0ULL;    UInt_t totfileentries = 0;
114    Long64_t idRun = 0LL;    UInt_t idRun = 0;
115    Int_t tmpSize =0;    Int_t tmpSize =0;
116    Float_t yTrig =0;    Float_t yTrig =0;
117    Float_t yUpperBackground =0;    Float_t yUpperBackground =0;
# Line 118  int NDCore(ULong64_t run, TFile *file, T Line 122  int NDCore(ULong64_t run, TFile *file, T
122    Int_t code = 0;    Int_t code = 0;
123    Int_t sgnl;    Int_t sgnl;
124    //    //
125      Long64_t maxsize = 10000000000LL;  
126      TTree::SetMaxTreeSize(maxsize);
127      //
128      //
129    // ND level2 classes    // ND level2 classes
130    //    //
131    NDLevel2 *nd = new NDLevel2();    NDLevel2 *nd = new NDLevel2();
# Line 128  int NDCore(ULong64_t run, TFile *file, T Line 136  int NDCore(ULong64_t run, TFile *file, T
136    TFile *l0File = 0;    TFile *l0File = 0;
137    TTree *l0tr = 0;    TTree *l0tr = 0;
138    TBranch *l0head = 0;    TBranch *l0head = 0;
   TBranch *l0registry = 0;  
139    TBranch *l0ND =0;    TBranch *l0ND =0;
   pamela::RegistryEvent *l0reg=0;  
140    pamela::EventHeader *eh = 0;    pamela::EventHeader *eh = 0;
141      pamela::PscuHeader *ph = 0;
142    pamela::neutron::NeutronRecord *l0nr = 0;    pamela::neutron::NeutronRecord *l0nr = 0;
143    pamela::neutron::NeutronEvent  *l0ne = 0;    pamela::neutron::NeutronEvent  *l0ne = 0;
144    //    //
# Line 142  int NDCore(ULong64_t run, TFile *file, T Line 149  int NDCore(ULong64_t run, TFile *file, T
149    stringstream file3;    stringstream file3;
150    stringstream qy;    stringstream qy;
151    Int_t totevent = 0;    Int_t totevent = 0;
152    ULong64_t atime = 0ULL;    UInt_t atime = 0;
153    Int_t ei = 0;    UInt_t re = 0;
   Int_t re = 0;  
154    //    //
155    // Working filename    // Working filename
156    //    //
# Line 159  int NDCore(ULong64_t run, TFile *file, T Line 165  int NDCore(ULong64_t run, TFile *file, T
165    TTree *tempND = 0;    TTree *tempND = 0;
166    stringstream tempname;    stringstream tempname;
167    stringstream NDfolder;    stringstream NDfolder;
168      Bool_t myfold = false;
169    tempname.str("");    tempname.str("");
170    tempname << outDir;    tempname << outDir;
171    tempname << "/" << processFolder.Data();    tempname << "/" << processFolder.Data();
172    NDfolder.str("");    NDfolder.str("");
173    NDfolder << tempname.str().c_str();    NDfolder << tempname.str().c_str();
   gSystem->MakeDirectory(NDfolder.str().c_str());  
174    tempname << "/NDtree_run";    tempname << "/NDtree_run";
175    tempname << run << ".root";      tempname << run << ".root";  
176      UInt_t totnorun = 0;
177    //    //
178    // DB classes    // DB classes
179    //    //
180    GL_ROOT *glroot = new GL_ROOT();    GL_ROOT *glroot = new GL_ROOT();
181      GL_TIMESYNC *dbtime = 0;
182    //    //
183    // Let's start!    // Let's start!
184    //    //
# Line 178  int NDCore(ULong64_t run, TFile *file, T Line 186  int NDCore(ULong64_t run, TFile *file, T
186    // if run != 0 we must process only that run but first we have to check if the tree MyDetector2 already exist in the file    // if run != 0 we must process only that run but first we have to check if the tree MyDetector2 already exist in the file
187    // if it exists we are reprocessing data and we must delete that entries, if not we must create it.    // if it exists we are reprocessing data and we must delete that entries, if not we must create it.
188    //    //
189    if ( run == 0ULL )  reproc = true;    if ( run == 0 )  reproc = true;
190    //    //
191    //    //
192    // Output file is "outputfile"    // Output file is "outputfile"
# Line 201  int NDCore(ULong64_t run, TFile *file, T Line 209  int NDCore(ULong64_t run, TFile *file, T
209    sgnl = 0;    sgnl = 0;
210    sgnl = runinfo->Update(run, "ND",NDversion);    sgnl = runinfo->Update(run, "ND",NDversion);
211    if ( sgnl ){    if ( sgnl ){
212      //printf(" ND - ERROR: RunInfo exited with non-zero status\n");      if ( debug ) printf(" ND - ERROR: RunInfo exited with non-zero status\n");
213      code = sgnl;      code = sgnl;
214      goto closeandexit;      goto closeandexit;
215    } else {    } else {
# Line 224  int NDCore(ULong64_t run, TFile *file, T Line 232  int NDCore(ULong64_t run, TFile *file, T
232    //    //
233    numbofrun = runinfo->GetNoRun();    numbofrun = runinfo->GetNoRun();
234    //    //
235      //
236      //
237      totnorun = runinfo->GetRunEntries();
238      //
239    // Try to access the S4 tree in the file, if it exists we are reprocessing data if not we are processing a new run    // Try to access the S4 tree in the file, if it exists we are reprocessing data if not we are processing a new run
240    //    //
241    NDtrclone = (TTree*)file->Get("NeutronD");    NDtrclone = (TTree*)file->Get("NeutronD");
# Line 233  int NDCore(ULong64_t run, TFile *file, T Line 245  int NDCore(ULong64_t run, TFile *file, T
245      // tree does not exist, we are not reprocessing      // tree does not exist, we are not reprocessing
246      //      //
247      reproc = false;      reproc = false;
248      if ( run == 0ULL ) {      if ( run == 0 ) {
249        if (verbose) printf(" ND - WARNING: you are reprocessing data but ND tree does not exist!\n");        if (verbose) printf(" ND - WARNING: you are reprocessing data but ND tree does not exist!\n");
250      }      }
251      if ( runinfo->IsReprocessing() && run != 0ULL ) {      if ( runinfo->IsReprocessing() && run != 0 ) {
252        if (verbose) printf(" ND - WARNING: it seems you are not reprocessing data but ND\n versioning information already exists in RunInfo.\n");        if (verbose) printf(" ND - WARNING: it seems you are not reprocessing data but ND\n versioning information already exists in RunInfo.\n");
253      }      }
254    } else {    } else {
255      //      //
256        NDtrclone->SetAutoSave(900000000000000LL);
257        //
258      // tree exists, we are reprocessing data. Are we reprocessing a single run or all the file?      // tree exists, we are reprocessing data. Are we reprocessing a single run or all the file?
259      //      //
260      reproc = true;      reproc = true;
261      //      //
262      // update versioning information      // update versioning information
263      //      //
     // sgnl = runinfo->Update(run, "ND",NDversion);  
264      if (verbose) printf("\n Preparing the pre-processing...\n");      if (verbose) printf("\n Preparing the pre-processing...\n");
265      //      //
266      if ( run == 0ULL ){      if ( run == 0 || totnorun == 1 ){
267        //        //
268        // we are reprocessing all the file        // we are reprocessing all the file
269        // if we are reprocessing everything we don't need to copy any old event and we can just work with the new tree and delete the old one immediately        // if we are reprocessing everything we don't need to copy any old event and we can just work with the new tree and delete the old one immediately
# Line 265  int NDCore(ULong64_t run, TFile *file, T Line 278  int NDCore(ULong64_t run, TFile *file, T
278        //        //
279        reprocall = false;        reprocall = false;
280        //        //
281        if (verbose) printf("\n ND - WARNING: Reprocessing run number %llu \n",run);        if (verbose) printf("\n ND - WARNING: Reprocessing run number %u \n",run);
282        //        //
283        // copying old tree to a new file        // copying old tree to a new file
284        //        //
285          gSystem->MakeDirectory(NDfolder.str().c_str());
286          myfold = true;
287        tempfile = new TFile(tempname.str().c_str(),"RECREATE");        tempfile = new TFile(tempname.str().c_str(),"RECREATE");
288        tempND = NDtrclone->CloneTree(-1,"fast");        tempND = NDtrclone->CloneTree(-1,"fast");
289        tempND->SetName("NeutronD-old");        tempND->SetName("NeutronD-old");
# Line 288  int NDCore(ULong64_t run, TFile *file, T Line 303  int NDCore(ULong64_t run, TFile *file, T
303    //    //
304    file->cd();    file->cd();
305    NDtr = new TTree("NeutronD-new","PAMELA Level2 NeutronD data");    NDtr = new TTree("NeutronD-new","PAMELA Level2 NeutronD data");
306      NDtr->SetAutoSave(900000000000000LL);
307    NDtr->Branch("NDLevel2","NDLevel2",&nd);    NDtr->Branch("NDLevel2","NDLevel2",&nd);
308    //    //
309    if ( reproc && !reprocall ){    if ( reproc && !reprocall ){
# Line 296  int NDCore(ULong64_t run, TFile *file, T Line 312  int NDCore(ULong64_t run, TFile *file, T
312      //      //
313      tempfile = new TFile(tempname.str().c_str(),"READ");      tempfile = new TFile(tempname.str().c_str(),"READ");
314      NDtrclone = (TTree*)tempfile->Get("NeutronD-old");      NDtrclone = (TTree*)tempfile->Get("NeutronD-old");
315        NDtrclone->SetAutoSave(900000000000000LL);
316      NDtrclone->SetBranchAddress("NDLevel2",&ndclone);      NDtrclone->SetBranchAddress("NDLevel2",&ndclone);
317      //            //      
318      if ( nobefrun > 0 ){      if ( nobefrun > 0 ){
319        if (verbose) {        if (verbose) {
320          printf("\n Pre-processing: copying events from the old tree before the processed run\n");            printf("\n Pre-processing: copying events from the old tree before the processed run\n");  
321          printf(" Copying %u events in the file which are before the beginning of the run %llu \n",nobefrun,run);          printf(" Copying %u events in the file which are before the beginning of the run %u \n",nobefrun,run);
322          printf(" Start copying at event number 0, end copying at event number %u \n",nobefrun);          printf(" Start copying at event number 0, end copying at event number %u \n",nobefrun);
323        }        }
324        for (UInt_t j = 0; j < nobefrun; j++){        for (UInt_t j = 0; j < nobefrun; j++){
325          //          //
326          NDtrclone->GetEntry(j);            if ( NDtrclone->GetEntry(j) <= 0 ) throw -36;    
327          //          //
328          // copy ndclone to mydec          // copy ndclone to mydec
329          //          //
330          //      nd = new NDLevel2();          //      nd = new NDLevel2();
331          nd->Clear();          //      nd->Clear();
332          memcpy(&nd,&ndclone,sizeof(ndclone));          memcpy(&nd,&ndclone,sizeof(ndclone));
333          //          //
334          // Fill entry in the new tree          // Fill entry in the new tree
# Line 336  int NDCore(ULong64_t run, TFile *file, T Line 353  int NDCore(ULong64_t run, TFile *file, T
353      idRun = runlist->At(irun);      idRun = runlist->At(irun);
354      if (verbose) {      if (verbose) {
355        printf("\n\n\n ####################################################################### \n");        printf("\n\n\n ####################################################################### \n");
356        printf("                    PROCESSING RUN NUMBER %i \n",(int)idRun);        printf("                    PROCESSING RUN NUMBER %u \n",idRun);
357        printf(" ####################################################################### \n\n\n");        printf(" ####################################################################### \n\n\n");
358      }      }
359      //      //
360      runinfo->ID_REG_RUN = 0ULL;      runinfo->ID_ROOT_L0 = 0;
361      //      //
362      // store in the runinfo class the GL_RUN variables for our run      // store in the runinfo class the GL_RUN variables for our run
363      //      //
364      sgnl = 0;      sgnl = 0;
365      sgnl = runinfo->GetRunInfo(idRun);      sgnl = runinfo->GetRunInfo(idRun);
366      if ( sgnl ){      if ( sgnl ){
367        //printf(" ND - ERROR: RunInfo exited with non-zero status\n");        if ( debug ) printf(" ND - ERROR: RunInfo exited with non-zero status\n");
368        code = sgnl;        code = sgnl;
369        goto closeandexit;        goto closeandexit;
370      } else {      } else {
371        sgnl = 0;        sgnl = 0;
372      };      };
373      //      //
374      // now you can access that variables using the RunInfo class this way runinfo->ID_REG_RUN      // now you can access that variables using the RunInfo class this way runinfo->ID_ROOT_L0
375      //      //
376      if ( runinfo->ID_REG_RUN == 0 ){      if ( runinfo->ID_ROOT_L0 == 0 ){
377        //printf("\n ND - ERROR: no run with ID_RUN = %i \n\n Exiting... \n\n",(int)idRun);        if ( debug ) printf("\n ND - ERROR: no run with ID_RUN = %u \n\n Exiting... \n\n",idRun);
378        code = -5;        code = -5;
379        goto closeandexit;            goto closeandexit;    
380      };      };
381      //      //
382        // prepare the timesync for the db
383        //
384        TString host = glt->CGetHost();
385        TString user = glt->CGetUser();
386        TString psw = glt->CGetPsw();
387        TSQLServer *dbc = TSQLServer::Connect(host.Data(),user.Data(),psw.Data());    
388        if ( !dbc->IsConnected() ) throw -604;
389        stringstream myquery;
390        myquery.str("");
391        myquery << "SET time_zone='+0:00';";
392        delete dbc->Query(myquery.str().c_str());
393        delete dbc->Query("SET sql_mode = 'NO_UNSIGNED_SUBTRACTION';");
394        dbtime = new GL_TIMESYNC(runinfo->ID_ROOT_L0,"ID",dbc);
395        //
396      // Search in the DB the path and name of the LEVEL0 file to be processed.      // Search in the DB the path and name of the LEVEL0 file to be processed.
397      //      //
398      glroot->Query_GL_ROOT(runinfo->ID_REG_RUN,dbc);      //    if ( !dbc->IsConnected() ) throw -604;
399        glroot->Query_GL_ROOT(runinfo->ID_ROOT_L0,dbc);
400      //      //
401      ftmpname.str("");      ftmpname.str("");
402      ftmpname << glroot->PATH.Data() << "/";      ftmpname << glroot->PATH.Data() << "/";
# Line 373  int NDCore(ULong64_t run, TFile *file, T Line 405  int NDCore(ULong64_t run, TFile *file, T
405      //      //
406      // print out informations      // print out informations
407      //      //
408      totevent = runinfo->EV_REG_PHYS_TO - runinfo->EV_REG_PHYS_FROM + 1;      totevent = runinfo->NEVENTS;
409      if (verbose) {      if (verbose) {
410        printf("\n LEVEL0 data file: %s \n",fname.Data());        printf("\n LEVEL0 data file: %s \n",fname.Data());
411        printf(" RUN HEADER absolute time is:  %llu \n",runinfo->RUNHEADER_TIME);        printf(" RUN HEADER absolute time is:  %u \n",runinfo->RUNHEADER_TIME);
412        printf(" RUN TRAILER absolute time is: %llu \n",runinfo->RUNTRAILER_TIME);        printf(" RUN TRAILER absolute time is: %u \n",runinfo->RUNTRAILER_TIME);
413        printf(" %i events to be processed for run %llu: from %i to %i (reg entries)\n\n",totevent,idRun,runinfo->EV_REG_PHYS_FROM,runinfo->EV_REG_PHYS_TO);        printf(" %i events to be processed for run %u: from %i to %i \n\n",totevent,idRun,runinfo->EV_FROM,runinfo->EV_FROM+totevent);
414      }      }
415      //      //
416        //    if ( !totevent ) goto closeandexit;
417        //
418      // Open Level0 file      // Open Level0 file
419      //      //
420        if ( l0File ) l0File->Close();
421      l0File = new TFile(fname.Data());      l0File = new TFile(fname.Data());
422      if ( !l0File ) {      if ( !l0File ) {
423        //printf(" ND - ERROR: problems opening  Level0 file\n");        if ( debug ) printf(" ND - ERROR: problems opening  Level0 file\n");
424        code = -6;        code = -6;
425        goto closeandexit;        goto closeandexit;
426      };      };
427      l0tr = (TTree*)l0File->Get("Physics");      l0tr = (TTree*)l0File->Get("Physics");
428      if ( !l0tr ) {      if ( !l0tr ) {
429        //printf(" ND - ERROR: no Physics tree in Level0 file\n");        if ( debug ) printf(" ND - ERROR: no Physics tree in Level0 file\n");
430        l0File->Close();        l0File->Close();
431        code = -7;        code = -7;
432        goto closeandexit;        goto closeandexit;
433      };      };
434      l0head = l0tr->GetBranch("Header");      l0head = l0tr->GetBranch("Header");
435      if ( !l0head ) {      if ( !l0head ) {
436        //printf(" ND - ERROR: no Header branch in Level0 tree\n");        if ( debug ) printf(" ND - ERROR: no Header branch in Level0 tree\n");
437        l0File->Close();        l0File->Close();
438        code = -8;        code = -8;
439        goto closeandexit;            goto closeandexit;    
440      };      };
     l0registry = l0tr->GetBranch("Registry");  
     if ( !l0registry ) {  
       //printf(" ND - ERROR: no Registry branch in Level0 tree\n");  
       l0File->Close();  
       code = -9;  
       goto closeandexit;      
     };  
441      l0ND = l0tr->GetBranch("Neutron");      l0ND = l0tr->GetBranch("Neutron");
442      if ( !l0ND ) {      if ( !l0ND ) {
443        //printf(" ND - ERROR: no ND branch in Level0 tree\n");        if ( debug ) printf(" ND - ERROR: no ND branch in Level0 tree\n");
444        l0File->Close();        l0File->Close();
445        code = -603;        code = -603;
446        goto closeandexit;        goto closeandexit;
447      };      };
448    
449      //      //
     l0tr->SetBranchAddress("Registry", &l0reg);  
450      l0tr->SetBranchAddress("Neutron", &l0ne);      l0tr->SetBranchAddress("Neutron", &l0ne);
451      l0tr->SetBranchAddress("Header", &eh);      l0tr->SetBranchAddress("Header", &eh);
452      //      //
453      nevents = l0registry->GetEntries();      nevents = l0ND->GetEntries();
454      //      //
455      if ( nevents < 1 ) {      if ( nevents < 1 && totevent ) {
456        //printf(" ND - ERROR: Level0 file is empty\n\n");        if ( debug ) printf(" ND - ERROR: Level0 file is empty\n\n");
457        l0File->Close();        l0File->Close();
458        code = -11;        code = -11;
459        goto closeandexit;        goto closeandexit;
460      };      };
461      //      //
462      if ( runinfo->EV_REG_PHYS_TO > nevents-1 ) {      if ( runinfo->EV_TO > nevents-1 && totevent ) {
463        //printf(" ND - ERROR: too few entries in the registry tree\n");        if ( debug ) printf(" ND - ERROR: too few entries in the tree\n");
464        l0File->Close();        l0File->Close();
465        code = -12;        code = -12;
466        goto closeandexit;        goto closeandexit;
# Line 443  int NDCore(ULong64_t run, TFile *file, T Line 470  int NDCore(ULong64_t run, TFile *file, T
470      //      //
471      if (verbose) printf("\n Ready to start! \n\n Processed events: \n\n");      if (verbose) printf("\n Ready to start! \n\n Processed events: \n\n");
472      //      //
473      for ( re = runinfo->EV_REG_PHYS_FROM; re <= runinfo->EV_REG_PHYS_TO; re++){      if ( dbc ){
474          dbc->Close();
475          delete dbc;
476          dbc = 0;
477        };
478        //
479        for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+runinfo->NEVENTS); re++){
480        //        //
481        if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000);          if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000);  
482        //        //
483        l0registry->GetEntry(re);        if ( l0head->GetEntry(re) <= 0 ) throw -36;
484        //        //
485        // absolute time of this event        // absolute time of this event
486        //        //
487        atime = l0reg->absTime;        ph = eh->GetPscuHeader();
488        //        atime = dbtime->DBabsTime(ph->GetOrbitalTime());  
       // physics events is at entry number ei where  
       //  
       ei = l0reg->event;  
489        //        //
490        // paranoid check        // paranoid check
491        //        //
492        if ( (atime > runinfo->RUNTRAILER_TIME) || (atime < runinfo->RUNHEADER_TIME)  ) {        if ( (atime > (runinfo->RUNTRAILER_TIME+1)) || (atime < (runinfo->RUNHEADER_TIME-1))  ) {
493          if (verbose) printf(" ND - WARNING: event at time outside the run time window, skipping it\n");          if (verbose) printf(" ND - WARNING: event at time outside the run time window, skipping it\n");
494          goto jumpev;          goto jumpev;
495        };        };
# Line 468  int NDCore(ULong64_t run, TFile *file, T Line 498  int NDCore(ULong64_t run, TFile *file, T
498        //        //
499        // start processing        // start processing
500        //        //
       //      nd = new NDLevel2();  
501        nd->Clear();        nd->Clear();
502        //        //
503        l0ND->GetEntry(ei);        if ( l0ND->GetEntry(re) <= 0 ) throw -36;
504        tmpSize = l0ne->Records->GetEntries();        tmpSize = l0ne->Records->GetEntries();
505        if (!tmpSize) continue;        if ( tmpSize && l0ne->unpackError == 0 ){
506        if (l0ne->unpackError == 1) continue;          for (Int_t j = 0; j < tmpSize; j++){
507        for (Int_t j = 0; j < tmpSize; j++){            l0nr = (pamela::neutron::NeutronRecord*)l0ne->Records->At(j);
508          l0nr = (pamela::neutron::NeutronRecord*)l0ne->Records->At(j);            yTrig            = yTrig             + (float)l0nr->trigPhysics;
509          yTrig            = yTrig             + (float)l0nr->trigPhysics;            yUpperBackground  = yUpperBackground  + (float)l0nr->upperBack;
510          yUpperBackground  = yUpperBackground  + (float)l0nr->upperBack;            yBottomBackground = yBottomBackground + (float)l0nr->bottomBack;
511          yBottomBackground = yBottomBackground + (float)l0nr->bottomBack;          }
512        }          nd->upperBack = yUpperBackground;
513        nd->upperBack = yUpperBackground;          nd->bottomBack = yBottomBackground;
514        nd->bottomBack = yBottomBackground;          nd->trigPhysics = yTrig;            
515        nd->trigPhysics = yTrig;              };
516              //
517          nd->unpackError = l0ne->unpackError;
518          //
519        NDtr->Fill();        // Fill tree NDLevel2 in the root file        NDtr->Fill();        // Fill tree NDLevel2 in the root file
520          //
521        yUpperBackground =0;        yUpperBackground =0;
522        yBottomBackground =0;        yBottomBackground =0;
523        yTrig=0;              yTrig=0;      
# Line 499  int NDCore(ULong64_t run, TFile *file, T Line 530  int NDCore(ULong64_t run, TFile *file, T
530      //      //
531      // Here you may want to clear some variables before processing another run        // Here you may want to clear some variables before processing another run  
532      //      //
533      ei = 0;      delete dbtime;
534    }; // process all the runs    }; // process all the runs
535    //    //
536    if (verbose) printf("\n Finished processing data \n");    if (verbose) printf("\n Finished processing data \n");
# Line 519  int NDCore(ULong64_t run, TFile *file, T Line 550  int NDCore(ULong64_t run, TFile *file, T
550          //          //
551          // Get entry from old tree          // Get entry from old tree
552          //          //
553          NDtrclone->GetEntry(j);            if ( NDtrclone->GetEntry(j) <= 0 ) throw -36;    
554          //          //
555          // copy ndclone to nd          // copy ndclone to nd
556          //          //
557          //      nd = new NDLevel2();          //      nd->Clear();
         nd->Clear();  
558          memcpy(&nd,&ndclone,sizeof(ndclone));          memcpy(&nd,&ndclone,sizeof(ndclone));
559          //          //
560          // Fill entry in the new tree          // Fill entry in the new tree
# Line 539  int NDCore(ULong64_t run, TFile *file, T Line 569  int NDCore(ULong64_t run, TFile *file, T
569    //    //
570    if ( l0File ) l0File->Close();    if ( l0File ) l0File->Close();
571    if ( tempfile ) tempfile->Close();                if ( tempfile ) tempfile->Close();            
572    gSystem->Unlink(tempname.str().c_str());    if ( myfold ) gSystem->Unlink(tempname.str().c_str());
573      //
   //if ( code < 0 ) printf("\n ND - ERROR: an error occurred, try to save anyway...\n");  
   //printf("\n Writing and closing rootple\n");  
   if ( runinfo ) runinfo->Close();      
574    if ( NDtr ) NDtr->SetName("NeutronD");        if ( NDtr ) NDtr->SetName("NeutronD");    
575    if ( file ){    if ( file ){
576      file->cd();      file->cd();
577      file->Write();      if ( NDtr ) NDtr->Write("NeutronD", TObject::kOverwrite); //  10RED bug fixed
578    };    };
579    //    //
580    gSystem->Unlink(NDfolder.str().c_str());    if ( myfold ) gSystem->Unlink(NDfolder.str().c_str());
581    //    //
582    // the end    // the end
583    //    //
584    if ( verbose ) printf("\n Exiting...\n");    if ( verbose ) printf("\n Exiting...\n");
585    if ( NDtr ) NDtr->Delete();    //  if ( NDtr ) NDtr->Delete();
586    //    //
587    if ( nd ) delete nd;    //  if ( nd ) delete nd;
588    if ( ndclone ) delete ndclone;    //if ( ndclone ) delete ndclone;
589      if ( glroot ) delete glroot;
590      if ( runinfo ) runinfo->Close();    
591    if ( runinfo ) delete runinfo;    if ( runinfo ) delete runinfo;
592    //    //
593    if(code < 0)  throw code;    if(code < 0)  throw code;
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