1 |
// |
2 |
// C/C++ headers |
3 |
// |
4 |
#include <fstream> |
5 |
#include <string.h> |
6 |
#include <iostream> |
7 |
#include <cstring> |
8 |
#include <stdio.h> |
9 |
// |
10 |
// ROOT headers |
11 |
// |
12 |
#include <TTree.h> |
13 |
#include <TClassEdit.h> |
14 |
#include <TObject.h> |
15 |
#include <TList.h> |
16 |
#include <TArrayL.h> |
17 |
#include <TSystem.h> |
18 |
#include <TSystemDirectory.h> |
19 |
#include <TString.h> |
20 |
#include <TFile.h> |
21 |
#include <TClass.h> |
22 |
#include <TSQLServer.h> |
23 |
#include <TSQLRow.h> |
24 |
#include <TSQLResult.h> |
25 |
#include <TClonesArray.h> |
26 |
#include <stdlib.h> |
27 |
#include <math.h> |
28 |
// |
29 |
// YODA headers |
30 |
// |
31 |
#include <PamelaRun.h> |
32 |
#include <RegistryEvent.h> |
33 |
#include <PscuHeader.h> |
34 |
#include <PscuEvent.h> |
35 |
#include <EventHeader.h> |
36 |
#include <RegistryEvent.h> |
37 |
#include <physics/neutronDetector/NeutronEvent.h> |
38 |
#include <physics/neutronDetector/NeutronRecord.h> |
39 |
//#include <yodaUtility.h> |
40 |
// |
41 |
// RunInfo header |
42 |
// |
43 |
#include <RunInfo.h> |
44 |
#include <GLTables.h> |
45 |
// |
46 |
// This program headers |
47 |
// |
48 |
#include <NDLevel2.h> |
49 |
#include <NDCore.h> |
50 |
#include <NDVerl2.h> |
51 |
|
52 |
using namespace std; |
53 |
|
54 |
// |
55 |
// CORE ROUTINE |
56 |
// |
57 |
// |
58 |
int NDCore(ULong64_t run, TFile *file, TSQLServer *dbc, Int_t NDargc, char *NDargv[]){ |
59 |
// |
60 |
Int_t i = 0; |
61 |
// |
62 |
TString processFolder = "NDFolder"; |
63 |
// |
64 |
// Set these to true to have a very verbose output. |
65 |
// |
66 |
Bool_t debug = false; |
67 |
// |
68 |
Bool_t verbose = false; |
69 |
// |
70 |
if ( NDargc > 0 ){ |
71 |
i = 0; |
72 |
while ( i < NDargc ){ |
73 |
if ( !strcmp(NDargv[i],"-processFolder") ) { |
74 |
if ( NDargc < i+1 ){ |
75 |
throw -3; |
76 |
}; |
77 |
processFolder = (TString)NDargv[i+1]; |
78 |
i++; |
79 |
}; |
80 |
if ( (!strcmp(NDargv[i],"--verbose")) || (!strcmp(NDargv[i],"-v")) ) { |
81 |
verbose = true; |
82 |
}; |
83 |
if ( (!strcmp(NDargv[i],"--debug")) || (!strcmp(NDargv[i],"-g")) ) { |
84 |
verbose= true; |
85 |
}; |
86 |
i++; |
87 |
}; |
88 |
}; |
89 |
// |
90 |
const char* outDir = gSystem->DirName(gSystem->DirName(file->GetPath())); |
91 |
// Variables for level2 |
92 |
// |
93 |
TTree *NDtr = 0; |
94 |
Long64_t nevents = 0LL; |
95 |
// |
96 |
// variables needed to reprocess data |
97 |
// |
98 |
TString NDversion; |
99 |
ItoRunInfo *runinfo = 0; |
100 |
TArrayL *runlist = 0; |
101 |
TTree *NDtrclone = 0; |
102 |
Bool_t reproc = false; |
103 |
Bool_t reprocall = false; |
104 |
UInt_t nobefrun = 0; |
105 |
UInt_t noaftrun = 0; |
106 |
UInt_t numbofrun = 0; |
107 |
stringstream ftmpname; |
108 |
TString fname; |
109 |
Long64_t totfileentries = 0ULL; |
110 |
Long64_t idRun = 0LL; |
111 |
Int_t tmpSize =0; |
112 |
Float_t yTrig =0; |
113 |
Float_t yUpperBackground =0; |
114 |
Float_t yBottomBackground =0; |
115 |
// |
116 |
// variables needed to handle error signals |
117 |
// |
118 |
Int_t code = 0; |
119 |
Int_t sgnl; |
120 |
// |
121 |
// ND level2 classes |
122 |
// |
123 |
NDLevel2 *nd = new NDLevel2(); |
124 |
NDLevel2 *ndclone = new NDLevel2(); |
125 |
// |
126 |
// define variables for opening and reading level0 file |
127 |
// |
128 |
TFile *l0File = 0; |
129 |
TTree *l0tr = 0; |
130 |
TBranch *l0head = 0; |
131 |
TBranch *l0registry = 0; |
132 |
TBranch *l0ND =0; |
133 |
pamela::RegistryEvent *l0reg=0; |
134 |
pamela::EventHeader *eh = 0; |
135 |
pamela::neutron::NeutronRecord *l0nr = 0; |
136 |
pamela::neutron::NeutronEvent *l0ne = 0; |
137 |
// |
138 |
// Define other basic variables |
139 |
// |
140 |
UInt_t procev = 0; |
141 |
stringstream file2; |
142 |
stringstream file3; |
143 |
stringstream qy; |
144 |
Int_t totevent = 0; |
145 |
ULong64_t atime = 0ULL; |
146 |
Int_t ei = 0; |
147 |
Int_t re = 0; |
148 |
// |
149 |
// Working filename |
150 |
// |
151 |
TString outputfile; |
152 |
stringstream name; |
153 |
name.str(""); |
154 |
name << outDir << "/"; |
155 |
// |
156 |
// temporary file and folder |
157 |
// |
158 |
TFile *tempfile = 0; |
159 |
TTree *tempND = 0; |
160 |
stringstream tempname; |
161 |
stringstream NDfolder; |
162 |
tempname.str(""); |
163 |
tempname << outDir; |
164 |
tempname << "/" << processFolder.Data(); |
165 |
NDfolder.str(""); |
166 |
NDfolder << tempname.str().c_str(); |
167 |
gSystem->MakeDirectory(NDfolder.str().c_str()); |
168 |
tempname << "/NDtree_run"; |
169 |
tempname << run << ".root"; |
170 |
// |
171 |
// DB classes |
172 |
// |
173 |
GL_ROOT *glroot = new GL_ROOT(); |
174 |
// |
175 |
// Let's start! |
176 |
// |
177 |
// As a first thing we must check what we have to do: if run = 0 we must process all events in the file has been passed |
178 |
// if run != 0 we must process only that run but first we have to check if the tree MyDetector2 already exist in the file |
179 |
// if it exists we are reprocessing data and we must delete that entries, if not we must create it. |
180 |
// |
181 |
if ( run == 0ULL ) reproc = true; |
182 |
// |
183 |
// |
184 |
// Output file is "outputfile" |
185 |
// |
186 |
if ( !file->IsOpen() ){ |
187 |
//printf(" ND - ERROR: cannot open file for writing\n"); |
188 |
throw -601 ; |
189 |
}; |
190 |
// |
191 |
// Retrieve GL_RUN variables from the level2 file |
192 |
// |
193 |
NDversion = NDInfo(false); // we should decide how to handle versioning system |
194 |
// |
195 |
// create an interface to RunInfo called "runinfo" |
196 |
// |
197 |
runinfo = new ItoRunInfo(file); |
198 |
// |
199 |
// open "Run" tree in level2 file, if not existing return an error (sngl != 0) |
200 |
// |
201 |
sgnl = 0; |
202 |
sgnl = runinfo->Update(run, "ND",NDversion); |
203 |
if ( sgnl ){ |
204 |
//printf(" ND - ERROR: RunInfo exited with non-zero status\n"); |
205 |
code = sgnl; |
206 |
goto closeandexit; |
207 |
} else { |
208 |
sgnl = 0; |
209 |
}; |
210 |
// |
211 |
// number of events in the file BEFORE the first event of our run |
212 |
// |
213 |
nobefrun = runinfo->GetFirstEntry(); |
214 |
// |
215 |
// total number of events in the file |
216 |
// |
217 |
totfileentries = runinfo->GetFileEntries(); |
218 |
// |
219 |
// first file entry AFTER the last event of our run |
220 |
// |
221 |
noaftrun = runinfo->GetLastEntry() + 1; |
222 |
// |
223 |
// number of run to be processed |
224 |
// |
225 |
numbofrun = runinfo->GetNoRun(); |
226 |
// |
227 |
// Try to access the S4 tree in the file, if it exists we are reprocessing data if not we are processing a new run |
228 |
// |
229 |
NDtrclone = (TTree*)file->Get("NeutronD"); |
230 |
// |
231 |
if ( !NDtrclone ){ |
232 |
// |
233 |
// tree does not exist, we are not reprocessing |
234 |
// |
235 |
reproc = false; |
236 |
if ( run == 0ULL ) { |
237 |
if (verbose) printf(" ND - WARNING: you are reprocessing data but ND tree does not exist!\n"); |
238 |
} |
239 |
if ( runinfo->IsReprocessing() && run != 0ULL ) { |
240 |
if (verbose) printf(" ND - WARNING: it seems you are not reprocessing data but ND\n versioning information already exists in RunInfo.\n"); |
241 |
} |
242 |
} else { |
243 |
// |
244 |
// tree exists, we are reprocessing data. Are we reprocessing a single run or all the file? |
245 |
// |
246 |
reproc = true; |
247 |
// |
248 |
// update versioning information |
249 |
// |
250 |
// sgnl = runinfo->Update(run, "ND",NDversion); |
251 |
if (verbose) printf("\n Preparing the pre-processing...\n"); |
252 |
// |
253 |
if ( run == 0ULL ){ |
254 |
// |
255 |
// we are reprocessing all the file |
256 |
// if we are reprocessing everything we don't need to copy any old event and we can just work with the new tree and delete the old one immediately |
257 |
// |
258 |
reprocall = true; |
259 |
// |
260 |
if (verbose) printf("\n ND - WARNING: Reprocessing all runs\n"); |
261 |
// |
262 |
} else { |
263 |
// |
264 |
// we are reprocessing a single run, we must copy to the new tree the events in the file which preceed the first event of the run |
265 |
// |
266 |
reprocall = false; |
267 |
// |
268 |
if (verbose) printf("\n ND - WARNING: Reprocessing run number %llu \n",run); |
269 |
// |
270 |
// copying old tree to a new file |
271 |
// |
272 |
tempfile = new TFile(tempname.str().c_str(),"RECREATE"); |
273 |
tempND = NDtrclone->CloneTree(-1,"fast"); |
274 |
tempND->SetName("NeutronD-old"); |
275 |
tempfile->Write(); |
276 |
tempfile->Close(); |
277 |
} |
278 |
// |
279 |
// Delete the old tree from old file and memory |
280 |
// |
281 |
NDtrclone->Delete("all"); |
282 |
// |
283 |
if (verbose) printf(" ...done!\n"); |
284 |
// |
285 |
}; |
286 |
// |
287 |
// create mydetector tree mydect |
288 |
// |
289 |
file->cd(); |
290 |
NDtr = new TTree("NeutronD-new","PAMELA Level2 NeutronD data"); |
291 |
NDtr->Branch("NDLevel2","NDLevel2",&nd); |
292 |
// |
293 |
if ( reproc && !reprocall ){ |
294 |
// |
295 |
// open new file and retrieve also tree informations |
296 |
// |
297 |
tempfile = new TFile(tempname.str().c_str(),"READ"); |
298 |
NDtrclone = (TTree*)tempfile->Get("NeutronD-old"); |
299 |
NDtrclone->SetBranchAddress("NDLevel2",&ndclone); |
300 |
// |
301 |
if ( nobefrun > 0 ){ |
302 |
if (verbose) { |
303 |
printf("\n Pre-processing: copying events from the old tree before the processed run\n"); |
304 |
printf(" Copying %u events in the file which are before the beginning of the run %llu \n",nobefrun,run); |
305 |
printf(" Start copying at event number 0, end copying at event number %u \n",nobefrun); |
306 |
} |
307 |
for (UInt_t j = 0; j < nobefrun; j++){ |
308 |
// |
309 |
NDtrclone->GetEntry(j); |
310 |
// |
311 |
// copy ndclone to mydec |
312 |
// |
313 |
nd = new NDLevel2(); |
314 |
memcpy(&nd,&ndclone,sizeof(ndclone)); |
315 |
// |
316 |
// Fill entry in the new tree |
317 |
// |
318 |
NDtr->Fill(); |
319 |
// |
320 |
}; |
321 |
if (verbose) printf(" Finished successful copying!\n"); |
322 |
}; |
323 |
}; |
324 |
// |
325 |
// Get the list of run to be processed, if only one run has to be processed the list will contain one entry only. |
326 |
// |
327 |
runlist = runinfo->GetRunList(); |
328 |
// |
329 |
// Loop over the run to be processed |
330 |
// |
331 |
for (UInt_t irun=0; irun < numbofrun; irun++){ |
332 |
// |
333 |
// retrieve the first run ID to be processed using the RunInfo list |
334 |
// |
335 |
idRun = runlist->At(irun); |
336 |
if (verbose) { |
337 |
printf("\n\n\n ####################################################################### \n"); |
338 |
printf(" PROCESSING RUN NUMBER %i \n",(int)idRun); |
339 |
printf(" ####################################################################### \n\n\n"); |
340 |
} |
341 |
// |
342 |
runinfo->ID_REG_RUN = 0ULL; |
343 |
// |
344 |
// store in the runinfo class the GL_RUN variables for our run |
345 |
// |
346 |
sgnl = 0; |
347 |
sgnl = runinfo->GetRunInfo(idRun); |
348 |
if ( sgnl ){ |
349 |
//printf(" ND - ERROR: RunInfo exited with non-zero status\n"); |
350 |
code = sgnl; |
351 |
goto closeandexit; |
352 |
} else { |
353 |
sgnl = 0; |
354 |
}; |
355 |
// |
356 |
// now you can access that variables using the RunInfo class this way runinfo->ID_REG_RUN |
357 |
// |
358 |
if ( runinfo->ID_REG_RUN == 0 ){ |
359 |
//printf("\n ND - ERROR: no run with ID_RUN = %i \n\n Exiting... \n\n",(int)idRun); |
360 |
code = -5; |
361 |
goto closeandexit; |
362 |
}; |
363 |
// |
364 |
// Search in the DB the path and name of the LEVEL0 file to be processed. |
365 |
// |
366 |
glroot->Query_GL_ROOT(runinfo->ID_REG_RUN,dbc); |
367 |
// |
368 |
ftmpname.str(""); |
369 |
ftmpname << glroot->PATH.Data() << "/"; |
370 |
ftmpname << glroot->NAME.Data(); |
371 |
fname = ftmpname.str().c_str(); |
372 |
// |
373 |
// print out informations |
374 |
// |
375 |
totevent = runinfo->EV_REG_PHYS_TO - runinfo->EV_REG_PHYS_FROM + 1; |
376 |
if (verbose) { |
377 |
printf("\n LEVEL0 data file: %s \n",fname.Data()); |
378 |
printf(" RUN HEADER absolute time is: %llu \n",runinfo->RUNHEADER_TIME); |
379 |
printf(" RUN TRAILER absolute time is: %llu \n",runinfo->RUNTRAILER_TIME); |
380 |
printf(" %i events to be processed for run %llu: from %i to %i (reg entries)\n\n",totevent,idRun,runinfo->EV_REG_PHYS_FROM,runinfo->EV_REG_PHYS_TO); |
381 |
} |
382 |
// |
383 |
// Open Level0 file |
384 |
// |
385 |
l0File = new TFile(fname.Data()); |
386 |
if ( !l0File ) { |
387 |
//printf(" ND - ERROR: problems opening Level0 file\n"); |
388 |
code = -6; |
389 |
goto closeandexit; |
390 |
}; |
391 |
l0tr = (TTree*)l0File->Get("Physics"); |
392 |
if ( !l0tr ) { |
393 |
//printf(" ND - ERROR: no Physics tree in Level0 file\n"); |
394 |
l0File->Close(); |
395 |
code = -7; |
396 |
goto closeandexit; |
397 |
}; |
398 |
l0head = l0tr->GetBranch("Header"); |
399 |
if ( !l0head ) { |
400 |
//printf(" ND - ERROR: no Header branch in Level0 tree\n"); |
401 |
l0File->Close(); |
402 |
code = -8; |
403 |
goto closeandexit; |
404 |
}; |
405 |
l0registry = l0tr->GetBranch("Registry"); |
406 |
if ( !l0registry ) { |
407 |
//printf(" ND - ERROR: no Registry branch in Level0 tree\n"); |
408 |
l0File->Close(); |
409 |
code = -9; |
410 |
goto closeandexit; |
411 |
}; |
412 |
l0ND = l0tr->GetBranch("Neutron"); |
413 |
if ( !l0ND ) { |
414 |
//printf(" ND - ERROR: no ND branch in Level0 tree\n"); |
415 |
l0File->Close(); |
416 |
code = -603; |
417 |
goto closeandexit; |
418 |
}; |
419 |
|
420 |
// |
421 |
l0tr->SetBranchAddress("Registry", &l0reg); |
422 |
l0tr->SetBranchAddress("Neutron", &l0ne); |
423 |
l0tr->SetBranchAddress("Header", &eh); |
424 |
// |
425 |
nevents = l0registry->GetEntries(); |
426 |
// |
427 |
if ( nevents < 1 ) { |
428 |
//printf(" ND - ERROR: Level0 file is empty\n\n"); |
429 |
l0File->Close(); |
430 |
code = -11; |
431 |
goto closeandexit; |
432 |
}; |
433 |
// |
434 |
if ( runinfo->EV_REG_PHYS_TO > nevents-1 ) { |
435 |
//printf(" ND - ERROR: too few entries in the registry tree\n"); |
436 |
l0File->Close(); |
437 |
code = -12; |
438 |
goto closeandexit; |
439 |
}; |
440 |
// |
441 |
// run over all the events of the run |
442 |
// |
443 |
if (verbose) printf("\n Ready to start! \n\n Processed events: \n\n"); |
444 |
// |
445 |
for ( re = runinfo->EV_REG_PHYS_FROM; re <= runinfo->EV_REG_PHYS_TO; re++){ |
446 |
// |
447 |
if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000); |
448 |
// |
449 |
l0registry->GetEntry(re); |
450 |
// |
451 |
// absolute time of this event |
452 |
// |
453 |
atime = l0reg->absTime; |
454 |
// |
455 |
// physics events is at entry number ei where |
456 |
// |
457 |
ei = l0reg->event; |
458 |
// |
459 |
// paranoid check |
460 |
// |
461 |
if ( (atime > runinfo->RUNTRAILER_TIME) || (atime < runinfo->RUNHEADER_TIME) ) { |
462 |
if (verbose) printf(" ND - WARNING: event at time outside the run time window, skipping it\n"); |
463 |
goto jumpev; |
464 |
}; |
465 |
// |
466 |
procev++; |
467 |
// |
468 |
// start processing |
469 |
// |
470 |
nd = new NDLevel2(); |
471 |
l0ND->GetEntry(ei); |
472 |
tmpSize = l0ne->Records->GetEntries(); |
473 |
if (!tmpSize) continue; |
474 |
if (l0ne->unpackError == 1) continue; |
475 |
for (Int_t j = 0; j < tmpSize; j++){ |
476 |
l0nr = (pamela::neutron::NeutronRecord*)l0ne->Records->At(j); |
477 |
yTrig = yTrig + (float)l0nr->trigPhysics; |
478 |
yUpperBackground = yUpperBackground + (float)l0nr->upperBack; |
479 |
yBottomBackground = yBottomBackground + (float)l0nr->bottomBack; |
480 |
} |
481 |
nd->upperBack = yUpperBackground; |
482 |
nd->bottomBack = yBottomBackground; |
483 |
nd->trigPhysics = yTrig; |
484 |
|
485 |
NDtr->Fill(); // Fill tree NDLevel2 in the root file |
486 |
|
487 |
yUpperBackground =0; |
488 |
yBottomBackground =0; |
489 |
yTrig=0; |
490 |
// |
491 |
// |
492 |
jumpev: |
493 |
debug = false; |
494 |
// |
495 |
}; |
496 |
// |
497 |
// Here you may want to clear some variables before processing another run |
498 |
// |
499 |
ei = 0; |
500 |
}; // process all the runs |
501 |
// |
502 |
if (verbose) printf("\n Finished processing data \n"); |
503 |
// |
504 |
closeandexit: |
505 |
// |
506 |
// we have finished processing the run(s). If we processed a single run now we must copy all the events after our run from the old tree to the new one and delete the old tree. |
507 |
// |
508 |
if ( !reprocall && reproc && code >= 0 ){ |
509 |
if ( totfileentries > noaftrun ){ |
510 |
if (verbose) { |
511 |
printf("\n Post-processing: copying events from the old tree after the processed run\n"); |
512 |
printf(" Copying %i events in the file which are after the end of the run %i \n",(int)(totfileentries-noaftrun),(int)run); |
513 |
printf(" Start copying at event number %i end copying at event number %i \n",(int)noaftrun,(int)totfileentries); |
514 |
} |
515 |
for (UInt_t j = noaftrun; j < totfileentries; j++ ){ |
516 |
// |
517 |
// Get entry from old tree |
518 |
// |
519 |
NDtrclone->GetEntry(j); |
520 |
// |
521 |
// copy ndclone to nd |
522 |
// |
523 |
nd = new NDLevel2(); |
524 |
memcpy(&nd,&ndclone,sizeof(ndclone)); |
525 |
// |
526 |
// Fill entry in the new tree |
527 |
// |
528 |
NDtr->Fill(); |
529 |
}; |
530 |
if (verbose) printf(" Finished successful copying!\n"); |
531 |
}; |
532 |
}; |
533 |
// |
534 |
// Close files, delete old tree(s), write and close level2 file |
535 |
// |
536 |
if ( l0File ) l0File->Close(); |
537 |
if ( tempfile ) tempfile->Close(); |
538 |
gSystem->Unlink(tempname.str().c_str()); |
539 |
|
540 |
//if ( code < 0 ) printf("\n ND - ERROR: an error occurred, try to save anyway...\n"); |
541 |
//printf("\n Writing and closing rootple\n"); |
542 |
if ( runinfo ) runinfo->Close(); |
543 |
if ( NDtr ) NDtr->SetName("NeutronD"); |
544 |
if ( file ){ |
545 |
file->cd(); |
546 |
file->Write(); |
547 |
}; |
548 |
// |
549 |
gSystem->Unlink(NDfolder.str().c_str()); |
550 |
// |
551 |
// the end |
552 |
// |
553 |
if (verbose) printf("\n Exiting...\n"); |
554 |
if(NDtr)NDtr->Delete(); |
555 |
if(code < 0) throw code; |
556 |
return(code); |
557 |
} |
558 |
|
559 |
|
560 |
|