1 |
mocchiut |
1.1 |
// |
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// C/C++ headers |
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// |
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#include <fstream> |
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#include <string.h> |
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#include <iostream> |
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#include <cstring> |
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#include <stdio.h> |
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// |
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// ROOT headers |
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// |
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#include <TTree.h> |
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#include <TClassEdit.h> |
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#include <TObject.h> |
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#include <TList.h> |
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#include <TArrayL.h> |
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#include <TSystem.h> |
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#include <TSystemDirectory.h> |
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#include <TString.h> |
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#include <TFile.h> |
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#include <TClass.h> |
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#include <TSQLServer.h> |
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#include <TSQLRow.h> |
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#include <TSQLResult.h> |
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#include <TClonesArray.h> |
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#include <stdlib.h> |
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#include <math.h> |
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// |
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// YODA headers |
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// |
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#include <PamelaRun.h> |
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#include <RegistryEvent.h> |
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#include <PscuHeader.h> |
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#include <PscuEvent.h> |
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#include <EventHeader.h> |
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#include <RegistryEvent.h> |
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#include <physics/neutronDetector/NeutronEvent.h> |
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#include <physics/neutronDetector/NeutronRecord.h> |
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//#include <yodaUtility.h> |
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// |
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// RunInfo header |
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// |
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#include <RunInfo.h> |
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#include <GLTables.h> |
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// |
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// This program headers |
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// |
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#include <NDLevel2.h> |
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#include <NDCore.h> |
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#include <NDVerl2.h> |
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using namespace std; |
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// |
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// CORE ROUTINE |
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// |
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// |
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int NDCore(ULong64_t run, TFile *file, TSQLServer *dbc, Int_t NDargc, char *NDargv[]){ |
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// |
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Int_t i = 0; |
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// |
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TString processFolder = "NDFolder"; |
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// |
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// Set these to true to have a very verbose output. |
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// |
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Bool_t debug = false; |
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// |
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Bool_t verbose = false; |
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// |
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if ( NDargc > 0 ){ |
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i = 0; |
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while ( i < NDargc ){ |
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if ( !strcmp(NDargv[i],"-processFolder") ) { |
74 |
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if ( NDargc < i+1 ){ |
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throw -3; |
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}; |
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processFolder = (TString)NDargv[i+1]; |
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i++; |
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}; |
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if ( (!strcmp(NDargv[i],"--verbose")) || (!strcmp(NDargv[i],"-v")) ) { |
81 |
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verbose = true; |
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}; |
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if ( (!strcmp(NDargv[i],"--debug")) || (!strcmp(NDargv[i],"-g")) ) { |
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verbose= true; |
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}; |
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i++; |
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}; |
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}; |
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// |
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const char* outDir = gSystem->DirName(gSystem->DirName(file->GetPath())); |
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// Variables for level2 |
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// |
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TTree *NDtr = 0; |
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Long64_t nevents = 0LL; |
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// |
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// variables needed to reprocess data |
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// |
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TString NDversion; |
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ItoRunInfo *runinfo = 0; |
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TArrayL *runlist = 0; |
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TTree *NDtrclone = 0; |
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Bool_t reproc = false; |
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Bool_t reprocall = false; |
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UInt_t nobefrun = 0; |
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UInt_t noaftrun = 0; |
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UInt_t numbofrun = 0; |
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stringstream ftmpname; |
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TString fname; |
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Long64_t totfileentries = 0ULL; |
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Long64_t idRun = 0LL; |
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Int_t tmpSize =0; |
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Float_t yTrig =0; |
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Float_t yUpperBackground =0; |
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Float_t yBottomBackground =0; |
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// |
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// variables needed to handle error signals |
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// |
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Int_t code = 0; |
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Int_t sgnl; |
120 |
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// |
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// ND level2 classes |
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// |
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NDLevel2 *nd = new NDLevel2(); |
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NDLevel2 *ndclone = new NDLevel2(); |
125 |
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// |
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// define variables for opening and reading level0 file |
127 |
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// |
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TFile *l0File = 0; |
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TTree *l0tr = 0; |
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TBranch *l0head = 0; |
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TBranch *l0registry = 0; |
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TBranch *l0ND =0; |
133 |
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pamela::RegistryEvent *l0reg=0; |
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pamela::EventHeader *eh = 0; |
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pamela::neutron::NeutronRecord *l0nr = 0; |
136 |
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pamela::neutron::NeutronEvent *l0ne = 0; |
137 |
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// |
138 |
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// Define other basic variables |
139 |
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// |
140 |
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UInt_t procev = 0; |
141 |
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stringstream file2; |
142 |
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stringstream file3; |
143 |
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stringstream qy; |
144 |
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Int_t totevent = 0; |
145 |
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ULong64_t atime = 0ULL; |
146 |
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Int_t ei = 0; |
147 |
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Int_t re = 0; |
148 |
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// |
149 |
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// Working filename |
150 |
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// |
151 |
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TString outputfile; |
152 |
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stringstream name; |
153 |
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name.str(""); |
154 |
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name << outDir << "/"; |
155 |
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// |
156 |
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// temporary file and folder |
157 |
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// |
158 |
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TFile *tempfile = 0; |
159 |
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TTree *tempND = 0; |
160 |
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stringstream tempname; |
161 |
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stringstream NDfolder; |
162 |
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tempname.str(""); |
163 |
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tempname << outDir; |
164 |
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tempname << "/" << processFolder.Data(); |
165 |
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NDfolder.str(""); |
166 |
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NDfolder << tempname.str().c_str(); |
167 |
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gSystem->MakeDirectory(NDfolder.str().c_str()); |
168 |
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tempname << "/NDtree_run"; |
169 |
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tempname << run << ".root"; |
170 |
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// |
171 |
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// DB classes |
172 |
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// |
173 |
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GL_ROOT *glroot = new GL_ROOT(); |
174 |
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// |
175 |
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// Let's start! |
176 |
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// |
177 |
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// As a first thing we must check what we have to do: if run = 0 we must process all events in the file has been passed |
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// if run != 0 we must process only that run but first we have to check if the tree MyDetector2 already exist in the file |
179 |
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// if it exists we are reprocessing data and we must delete that entries, if not we must create it. |
180 |
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// |
181 |
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if ( run == 0ULL ) reproc = true; |
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// |
183 |
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// |
184 |
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// Output file is "outputfile" |
185 |
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// |
186 |
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if ( !file->IsOpen() ){ |
187 |
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//printf(" ND - ERROR: cannot open file for writing\n"); |
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throw -601 ; |
189 |
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}; |
190 |
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// |
191 |
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// Retrieve GL_RUN variables from the level2 file |
192 |
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// |
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NDversion = NDInfo(false); // we should decide how to handle versioning system |
194 |
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// |
195 |
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// create an interface to RunInfo called "runinfo" |
196 |
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// |
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runinfo = new ItoRunInfo(file); |
198 |
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// |
199 |
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// open "Run" tree in level2 file, if not existing return an error (sngl != 0) |
200 |
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// |
201 |
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sgnl = 0; |
202 |
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sgnl = runinfo->Update(run, "ND",NDversion); |
203 |
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if ( sgnl ){ |
204 |
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//printf(" ND - ERROR: RunInfo exited with non-zero status\n"); |
205 |
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code = sgnl; |
206 |
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goto closeandexit; |
207 |
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} else { |
208 |
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sgnl = 0; |
209 |
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}; |
210 |
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// |
211 |
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// number of events in the file BEFORE the first event of our run |
212 |
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// |
213 |
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nobefrun = runinfo->GetFirstEntry(); |
214 |
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// |
215 |
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// total number of events in the file |
216 |
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// |
217 |
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totfileentries = runinfo->GetFileEntries(); |
218 |
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// |
219 |
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// first file entry AFTER the last event of our run |
220 |
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// |
221 |
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noaftrun = runinfo->GetLastEntry() + 1; |
222 |
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// |
223 |
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// number of run to be processed |
224 |
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// |
225 |
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numbofrun = runinfo->GetNoRun(); |
226 |
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// |
227 |
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// Try to access the S4 tree in the file, if it exists we are reprocessing data if not we are processing a new run |
228 |
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// |
229 |
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NDtrclone = (TTree*)file->Get("NeutronD"); |
230 |
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// |
231 |
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if ( !NDtrclone ){ |
232 |
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// |
233 |
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// tree does not exist, we are not reprocessing |
234 |
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// |
235 |
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reproc = false; |
236 |
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if ( run == 0ULL ) { |
237 |
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if (verbose) printf(" ND - WARNING: you are reprocessing data but ND tree does not exist!\n"); |
238 |
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} |
239 |
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if ( runinfo->IsReprocessing() && run != 0ULL ) { |
240 |
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if (verbose) printf(" ND - WARNING: it seems you are not reprocessing data but ND\n versioning information already exists in RunInfo.\n"); |
241 |
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} |
242 |
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} else { |
243 |
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// |
244 |
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// tree exists, we are reprocessing data. Are we reprocessing a single run or all the file? |
245 |
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// |
246 |
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reproc = true; |
247 |
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// |
248 |
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// update versioning information |
249 |
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// |
250 |
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// sgnl = runinfo->Update(run, "ND",NDversion); |
251 |
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if (verbose) printf("\n Preparing the pre-processing...\n"); |
252 |
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// |
253 |
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if ( run == 0ULL ){ |
254 |
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// |
255 |
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// we are reprocessing all the file |
256 |
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// if we are reprocessing everything we don't need to copy any old event and we can just work with the new tree and delete the old one immediately |
257 |
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// |
258 |
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reprocall = true; |
259 |
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// |
260 |
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if (verbose) printf("\n ND - WARNING: Reprocessing all runs\n"); |
261 |
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// |
262 |
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} else { |
263 |
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// |
264 |
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// we are reprocessing a single run, we must copy to the new tree the events in the file which preceed the first event of the run |
265 |
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// |
266 |
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reprocall = false; |
267 |
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// |
268 |
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if (verbose) printf("\n ND - WARNING: Reprocessing run number %llu \n",run); |
269 |
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// |
270 |
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// copying old tree to a new file |
271 |
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// |
272 |
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tempfile = new TFile(tempname.str().c_str(),"RECREATE"); |
273 |
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tempND = NDtrclone->CloneTree(-1,"fast"); |
274 |
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tempND->SetName("NeutronD-old"); |
275 |
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tempfile->Write(); |
276 |
|
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tempfile->Close(); |
277 |
|
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} |
278 |
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// |
279 |
|
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// Delete the old tree from old file and memory |
280 |
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// |
281 |
|
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NDtrclone->Delete("all"); |
282 |
|
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// |
283 |
|
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if (verbose) printf(" ...done!\n"); |
284 |
|
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// |
285 |
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}; |
286 |
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// |
287 |
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// create mydetector tree mydect |
288 |
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// |
289 |
|
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file->cd(); |
290 |
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NDtr = new TTree("NeutronD-new","PAMELA Level2 NeutronD data"); |
291 |
|
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NDtr->Branch("NDLevel2","NDLevel2",&nd); |
292 |
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// |
293 |
|
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if ( reproc && !reprocall ){ |
294 |
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// |
295 |
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// open new file and retrieve also tree informations |
296 |
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// |
297 |
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tempfile = new TFile(tempname.str().c_str(),"READ"); |
298 |
|
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NDtrclone = (TTree*)tempfile->Get("NeutronD-old"); |
299 |
|
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NDtrclone->SetBranchAddress("NDLevel2",&ndclone); |
300 |
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// |
301 |
|
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if ( nobefrun > 0 ){ |
302 |
|
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if (verbose) { |
303 |
|
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printf("\n Pre-processing: copying events from the old tree before the processed run\n"); |
304 |
|
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printf(" Copying %u events in the file which are before the beginning of the run %llu \n",nobefrun,run); |
305 |
|
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printf(" Start copying at event number 0, end copying at event number %u \n",nobefrun); |
306 |
|
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} |
307 |
|
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for (UInt_t j = 0; j < nobefrun; j++){ |
308 |
|
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// |
309 |
|
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NDtrclone->GetEntry(j); |
310 |
|
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// |
311 |
|
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// copy ndclone to mydec |
312 |
|
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// |
313 |
mocchiut |
1.2 |
// nd = new NDLevel2(); |
314 |
|
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nd->Clear(); |
315 |
mocchiut |
1.1 |
memcpy(&nd,&ndclone,sizeof(ndclone)); |
316 |
|
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// |
317 |
|
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// Fill entry in the new tree |
318 |
|
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// |
319 |
|
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NDtr->Fill(); |
320 |
|
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// |
321 |
|
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}; |
322 |
|
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if (verbose) printf(" Finished successful copying!\n"); |
323 |
|
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}; |
324 |
|
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}; |
325 |
|
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// |
326 |
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// Get the list of run to be processed, if only one run has to be processed the list will contain one entry only. |
327 |
|
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// |
328 |
|
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runlist = runinfo->GetRunList(); |
329 |
|
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// |
330 |
|
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// Loop over the run to be processed |
331 |
|
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// |
332 |
|
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for (UInt_t irun=0; irun < numbofrun; irun++){ |
333 |
|
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// |
334 |
|
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// retrieve the first run ID to be processed using the RunInfo list |
335 |
|
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// |
336 |
|
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idRun = runlist->At(irun); |
337 |
|
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if (verbose) { |
338 |
|
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printf("\n\n\n ####################################################################### \n"); |
339 |
|
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printf(" PROCESSING RUN NUMBER %i \n",(int)idRun); |
340 |
|
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printf(" ####################################################################### \n\n\n"); |
341 |
|
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} |
342 |
|
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// |
343 |
|
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runinfo->ID_REG_RUN = 0ULL; |
344 |
|
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// |
345 |
|
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// store in the runinfo class the GL_RUN variables for our run |
346 |
|
|
// |
347 |
|
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sgnl = 0; |
348 |
|
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sgnl = runinfo->GetRunInfo(idRun); |
349 |
|
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if ( sgnl ){ |
350 |
|
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//printf(" ND - ERROR: RunInfo exited with non-zero status\n"); |
351 |
|
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code = sgnl; |
352 |
|
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goto closeandexit; |
353 |
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} else { |
354 |
|
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sgnl = 0; |
355 |
|
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}; |
356 |
|
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// |
357 |
|
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// now you can access that variables using the RunInfo class this way runinfo->ID_REG_RUN |
358 |
|
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// |
359 |
|
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if ( runinfo->ID_REG_RUN == 0 ){ |
360 |
|
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//printf("\n ND - ERROR: no run with ID_RUN = %i \n\n Exiting... \n\n",(int)idRun); |
361 |
|
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code = -5; |
362 |
|
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goto closeandexit; |
363 |
|
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}; |
364 |
|
|
// |
365 |
|
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// Search in the DB the path and name of the LEVEL0 file to be processed. |
366 |
|
|
// |
367 |
|
|
glroot->Query_GL_ROOT(runinfo->ID_REG_RUN,dbc); |
368 |
|
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// |
369 |
|
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ftmpname.str(""); |
370 |
|
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ftmpname << glroot->PATH.Data() << "/"; |
371 |
|
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ftmpname << glroot->NAME.Data(); |
372 |
|
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fname = ftmpname.str().c_str(); |
373 |
|
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// |
374 |
|
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// print out informations |
375 |
|
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// |
376 |
|
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totevent = runinfo->EV_REG_PHYS_TO - runinfo->EV_REG_PHYS_FROM + 1; |
377 |
|
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if (verbose) { |
378 |
|
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printf("\n LEVEL0 data file: %s \n",fname.Data()); |
379 |
|
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printf(" RUN HEADER absolute time is: %llu \n",runinfo->RUNHEADER_TIME); |
380 |
|
|
printf(" RUN TRAILER absolute time is: %llu \n",runinfo->RUNTRAILER_TIME); |
381 |
|
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printf(" %i events to be processed for run %llu: from %i to %i (reg entries)\n\n",totevent,idRun,runinfo->EV_REG_PHYS_FROM,runinfo->EV_REG_PHYS_TO); |
382 |
|
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} |
383 |
|
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// |
384 |
|
|
// Open Level0 file |
385 |
|
|
// |
386 |
|
|
l0File = new TFile(fname.Data()); |
387 |
|
|
if ( !l0File ) { |
388 |
|
|
//printf(" ND - ERROR: problems opening Level0 file\n"); |
389 |
|
|
code = -6; |
390 |
|
|
goto closeandexit; |
391 |
|
|
}; |
392 |
|
|
l0tr = (TTree*)l0File->Get("Physics"); |
393 |
|
|
if ( !l0tr ) { |
394 |
|
|
//printf(" ND - ERROR: no Physics tree in Level0 file\n"); |
395 |
|
|
l0File->Close(); |
396 |
|
|
code = -7; |
397 |
|
|
goto closeandexit; |
398 |
|
|
}; |
399 |
|
|
l0head = l0tr->GetBranch("Header"); |
400 |
|
|
if ( !l0head ) { |
401 |
|
|
//printf(" ND - ERROR: no Header branch in Level0 tree\n"); |
402 |
|
|
l0File->Close(); |
403 |
|
|
code = -8; |
404 |
|
|
goto closeandexit; |
405 |
|
|
}; |
406 |
|
|
l0registry = l0tr->GetBranch("Registry"); |
407 |
|
|
if ( !l0registry ) { |
408 |
|
|
//printf(" ND - ERROR: no Registry branch in Level0 tree\n"); |
409 |
|
|
l0File->Close(); |
410 |
|
|
code = -9; |
411 |
|
|
goto closeandexit; |
412 |
|
|
}; |
413 |
|
|
l0ND = l0tr->GetBranch("Neutron"); |
414 |
|
|
if ( !l0ND ) { |
415 |
|
|
//printf(" ND - ERROR: no ND branch in Level0 tree\n"); |
416 |
|
|
l0File->Close(); |
417 |
|
|
code = -603; |
418 |
|
|
goto closeandexit; |
419 |
|
|
}; |
420 |
|
|
|
421 |
|
|
// |
422 |
|
|
l0tr->SetBranchAddress("Registry", &l0reg); |
423 |
|
|
l0tr->SetBranchAddress("Neutron", &l0ne); |
424 |
|
|
l0tr->SetBranchAddress("Header", &eh); |
425 |
|
|
// |
426 |
|
|
nevents = l0registry->GetEntries(); |
427 |
|
|
// |
428 |
|
|
if ( nevents < 1 ) { |
429 |
|
|
//printf(" ND - ERROR: Level0 file is empty\n\n"); |
430 |
|
|
l0File->Close(); |
431 |
|
|
code = -11; |
432 |
|
|
goto closeandexit; |
433 |
|
|
}; |
434 |
|
|
// |
435 |
|
|
if ( runinfo->EV_REG_PHYS_TO > nevents-1 ) { |
436 |
|
|
//printf(" ND - ERROR: too few entries in the registry tree\n"); |
437 |
|
|
l0File->Close(); |
438 |
|
|
code = -12; |
439 |
|
|
goto closeandexit; |
440 |
|
|
}; |
441 |
|
|
// |
442 |
|
|
// run over all the events of the run |
443 |
|
|
// |
444 |
|
|
if (verbose) printf("\n Ready to start! \n\n Processed events: \n\n"); |
445 |
|
|
// |
446 |
|
|
for ( re = runinfo->EV_REG_PHYS_FROM; re <= runinfo->EV_REG_PHYS_TO; re++){ |
447 |
|
|
// |
448 |
|
|
if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000); |
449 |
|
|
// |
450 |
|
|
l0registry->GetEntry(re); |
451 |
|
|
// |
452 |
|
|
// absolute time of this event |
453 |
|
|
// |
454 |
|
|
atime = l0reg->absTime; |
455 |
|
|
// |
456 |
|
|
// physics events is at entry number ei where |
457 |
|
|
// |
458 |
|
|
ei = l0reg->event; |
459 |
|
|
// |
460 |
|
|
// paranoid check |
461 |
|
|
// |
462 |
|
|
if ( (atime > runinfo->RUNTRAILER_TIME) || (atime < runinfo->RUNHEADER_TIME) ) { |
463 |
|
|
if (verbose) printf(" ND - WARNING: event at time outside the run time window, skipping it\n"); |
464 |
|
|
goto jumpev; |
465 |
|
|
}; |
466 |
|
|
// |
467 |
|
|
procev++; |
468 |
|
|
// |
469 |
|
|
// start processing |
470 |
|
|
// |
471 |
mocchiut |
1.2 |
// nd = new NDLevel2(); |
472 |
|
|
nd->Clear(); |
473 |
|
|
// |
474 |
mocchiut |
1.1 |
l0ND->GetEntry(ei); |
475 |
|
|
tmpSize = l0ne->Records->GetEntries(); |
476 |
|
|
if (!tmpSize) continue; |
477 |
|
|
if (l0ne->unpackError == 1) continue; |
478 |
|
|
for (Int_t j = 0; j < tmpSize; j++){ |
479 |
|
|
l0nr = (pamela::neutron::NeutronRecord*)l0ne->Records->At(j); |
480 |
|
|
yTrig = yTrig + (float)l0nr->trigPhysics; |
481 |
|
|
yUpperBackground = yUpperBackground + (float)l0nr->upperBack; |
482 |
|
|
yBottomBackground = yBottomBackground + (float)l0nr->bottomBack; |
483 |
|
|
} |
484 |
|
|
nd->upperBack = yUpperBackground; |
485 |
|
|
nd->bottomBack = yBottomBackground; |
486 |
|
|
nd->trigPhysics = yTrig; |
487 |
|
|
|
488 |
|
|
NDtr->Fill(); // Fill tree NDLevel2 in the root file |
489 |
|
|
|
490 |
|
|
yUpperBackground =0; |
491 |
|
|
yBottomBackground =0; |
492 |
|
|
yTrig=0; |
493 |
|
|
// |
494 |
|
|
// |
495 |
|
|
jumpev: |
496 |
|
|
debug = false; |
497 |
|
|
// |
498 |
|
|
}; |
499 |
|
|
// |
500 |
|
|
// Here you may want to clear some variables before processing another run |
501 |
|
|
// |
502 |
|
|
ei = 0; |
503 |
|
|
}; // process all the runs |
504 |
|
|
// |
505 |
|
|
if (verbose) printf("\n Finished processing data \n"); |
506 |
|
|
// |
507 |
|
|
closeandexit: |
508 |
|
|
// |
509 |
|
|
// we have finished processing the run(s). If we processed a single run now we must copy all the events after our run from the old tree to the new one and delete the old tree. |
510 |
|
|
// |
511 |
|
|
if ( !reprocall && reproc && code >= 0 ){ |
512 |
|
|
if ( totfileentries > noaftrun ){ |
513 |
|
|
if (verbose) { |
514 |
|
|
printf("\n Post-processing: copying events from the old tree after the processed run\n"); |
515 |
|
|
printf(" Copying %i events in the file which are after the end of the run %i \n",(int)(totfileentries-noaftrun),(int)run); |
516 |
|
|
printf(" Start copying at event number %i end copying at event number %i \n",(int)noaftrun,(int)totfileentries); |
517 |
|
|
} |
518 |
|
|
for (UInt_t j = noaftrun; j < totfileentries; j++ ){ |
519 |
|
|
// |
520 |
|
|
// Get entry from old tree |
521 |
|
|
// |
522 |
|
|
NDtrclone->GetEntry(j); |
523 |
|
|
// |
524 |
|
|
// copy ndclone to nd |
525 |
|
|
// |
526 |
mocchiut |
1.2 |
// nd = new NDLevel2(); |
527 |
|
|
nd->Clear(); |
528 |
mocchiut |
1.1 |
memcpy(&nd,&ndclone,sizeof(ndclone)); |
529 |
|
|
// |
530 |
|
|
// Fill entry in the new tree |
531 |
|
|
// |
532 |
|
|
NDtr->Fill(); |
533 |
|
|
}; |
534 |
|
|
if (verbose) printf(" Finished successful copying!\n"); |
535 |
|
|
}; |
536 |
|
|
}; |
537 |
|
|
// |
538 |
|
|
// Close files, delete old tree(s), write and close level2 file |
539 |
|
|
// |
540 |
|
|
if ( l0File ) l0File->Close(); |
541 |
|
|
if ( tempfile ) tempfile->Close(); |
542 |
|
|
gSystem->Unlink(tempname.str().c_str()); |
543 |
|
|
|
544 |
|
|
//if ( code < 0 ) printf("\n ND - ERROR: an error occurred, try to save anyway...\n"); |
545 |
|
|
//printf("\n Writing and closing rootple\n"); |
546 |
|
|
if ( runinfo ) runinfo->Close(); |
547 |
|
|
if ( NDtr ) NDtr->SetName("NeutronD"); |
548 |
|
|
if ( file ){ |
549 |
|
|
file->cd(); |
550 |
|
|
file->Write(); |
551 |
|
|
}; |
552 |
|
|
// |
553 |
|
|
gSystem->Unlink(NDfolder.str().c_str()); |
554 |
|
|
// |
555 |
|
|
// the end |
556 |
|
|
// |
557 |
mocchiut |
1.3 |
if ( verbose ) printf("\n Exiting...\n"); |
558 |
|
|
if ( NDtr ) NDtr->Delete(); |
559 |
|
|
// |
560 |
|
|
if ( nd ) delete nd; |
561 |
|
|
if ( ndclone ) delete ndclone; |
562 |
|
|
if ( runinfo ) delete runinfo; |
563 |
|
|
// |
564 |
mocchiut |
1.1 |
if(code < 0) throw code; |
565 |
|
|
return(code); |
566 |
|
|
} |
567 |
|
|
|
568 |
|
|
|
569 |
|
|
|