CalorimeterLevel2/src/CaloCore.cpp

/**
 * \file CaloCore.cpp
 * \author Emiliano Mocchiutti
 */
//
//   Given a calibration and a data file this program create an ntuple with LEVEL2 calorimeter variables - Emiliano Mocchiutti
//
//   CaloCore.cxx      version 3.05 (2006-05-30)
//
//   The only input needed is the path to the directory created by YODA for the data file you want to analyze.
//
//   Changelog:
//
//   7.00 (2013-11): Code to call this routine for level1 data only added.
//
//   3.08 (2006-11-13): Added high energy nuclei capability and "process all events" capability.
//
//   3.04 - 3.05 (2006-05-30): Qlast and nlast are now calculated using 4 (not 8) strips aournd the shower axis. Small bug fixed.
//
//   3.03 - 3.04 (2006-05-23): Forgot to put impx and impy in the PAMELA reference system, fixed.
//
//   3.02 - 3.03 (2006-05-18): updated to be called in DarthVader. Output dimension are now in cm and in the PAMELA reference system.
//
//   3.01 - 3.02 (2006-04-21): when copying entries get size of caclone and not of ca... (shouldn't matter). Fixed increasing file dimension bug when reprocessing.
//                             Added variable planemax[2], plane of maximum energy release (x and y) in final output. Use ItoRunInfo instead of RunInfo.
//
//   3.00 - 3.01 (2006-04-14): fixed small bug in tagging the track used to determine track-related variables, put in caloprocessing the opening of parameters files, fixed
//                             small bug in fortran routines
//
//   2.01 - 3.00 (2006-04-14): almost everything has changed. Now it can process one, all or some runs, introduced the final CaloLevel2 class+methods and the 
//                             working class "CaloProcessing", linked to the preliminary tracker flight software v0r00, reads YODA unique output files,
//                             reduced the number of installed libraries, F77 programs splitted depending on the function contained, introduced the readout and
//                             processing of self-trigger events, if the tracker provides more than one track all calorimeter track-related variables are saved
//                             as many times as the number of tracks (via the TClonesArray object in the level2 rootple) and many other small changes.
//
//   2.00 - 2.01 (2006-01-26): bug: wrong calculation of baselines in some cases, fixed.
//
//   1.00 - 2.00 (2006-01-11): use TSQL ROOT classes instead of directly calling MySQL.
//
//   0.00 - 1.00 (2005-09-14): seems working.
//
//   0.00        (2005-09-09): clone of CaloLEVEL2.c .
//
// C/C++ headers
//
#include <fstream>
#include <string.h>
//
// ROOT headers
//
#include <TTree.h>
#include <TClassEdit.h>
#include <TObject.h>
#include <TList.h>
#include <TArrayI.h>
#include <TSystem.h>
#include <TSystemDirectory.h>
#include <TString.h>
#include <TFile.h>
#include <TClass.h>
#include <TCanvas.h>
#include <TH1.h>
#include <TH1F.h>
#include <TH2D.h>
#include <TLatex.h>
#include <TPad.h>
#include <TSQLServer.h>
#include <TSQLRow.h>
#include <TSQLResult.h>
#include <TClonesArray.h>
#include <TStreamerInfo.h>
//
// This program headers
//
#include <RunInfo.h>
//
// YODA headers
//
#include <PamelaRun.h>
#include <physics/trigger/TriggerEvent.h>
//
// This program headers
//
#include <CaloCore.h>
#include <CaloLevel1.h>
#include <CaloLevel2.h>
#include <CaloLevel0.h>
#include <CaloVerl2.h>
//
// Tracker classes headers and definitions
//
#include <TrkLevel2.h>
#include <ExtTrack.h> // new tracking code 
//
using namespace std;
//
// IsCaloSelfTrigger method from Nicola (adapted)
//
//===============================================================================
// The IsCaloSelfTrigger functions checks in the trigger pattern register
// whether the event has been triggered by the calorimeter or not.
// Since the calorimeter self trigger coincidences are slower than both
// TOF and S4 triggers the triggering condition is checked for these detectors
// before looking for a calorimeter coincidence
//===============================================================================
//Int_t IsCaloSelfTrigger(TrigLevel2* event)
Int_t IsCaloSelfTrigger(UInt_t tc, UInt_t *pt)
{
  //  UInt_t tc, *pt;
  bool S1or, S2or, S3or;
  bool S1and, S2and, S3and;

  //  tc = event->trigconf;
  //  pt = event->patterntrig;

  if (tc & CCALIB_ON) return false;                // calibration trigger
  
  S1or = S11(pt) || S12(pt);
  S2or = S21(pt) || S22(pt);
  S3or = S31(pt) || S32(pt);
  S1and = S11(pt) && S12(pt);
  S2and = S21(pt) && S22(pt);
  S3and = S31(pt) && S32(pt);

  switch (tc & ~(CCALO | CS4 | CCALIB_ON)) {
  case CTOF1:
       if (S1or && S2or && S3or) return 0;    // TOF1 trigger
       break;
  case CTOF2:
       if (S1and && S2and && S3and) return 0; // TOF2 trigger
       break;
  case CTOF3:
       if (S2or && S3or) return 0;            // TOF3 trigger
       break;
  case CTOF4:
       if (S2and && S3and) return 0;          // TOF4 trigger
       break;
  case CTOF5:
       if (S12(pt) && S2and) return 0;        // TOF5 trigger
       break;
  case CTOF6:
       if (S1or && S3or) return 0;            // TOF6 trigger
       break;
  case CTOF7:
       if (S1and && S3and) return 0;          // TOF7 trigger
       break;
  default:                                        // other trigger configuration
       break;
  }
  
  if ((tc & CS4) && PS4(pt)) return 2;         // S4 trigger
  
  if (PCaloST(pt)) return 2;                   // calorimeter trigger
  
  return 2;                        // nobody gernerated the trigger?
}

//
// CORE ROUTINE
//
int CaloCore(UInt_t run, TFile *file, GL_TABLES *glt, Int_t calargc, char *calargv[]){
  //
  // Set these to true to have a very verbose output.
  //
  Bool_t verbose = false;
  Bool_t debug = false;
  //
  Bool_t crosst = true;
  Bool_t ctground = false;
  Bool_t usetable = true;
  Bool_t noselfct = false;
  //
  Bool_t trackanyway = true;
  //
  Float_t rigdefault = 50.;
  // 
  Bool_t hZn = true;
  //
  Bool_t withtrk = true;
  //
  Bool_t st = true;
  //
  Bool_t getl1 = true;
  //
  Bool_t mechal = false;
  //
  Bool_t checksimu = true;
  //
  Bool_t mask18 = false;
  //
  Bool_t cl1only = false;
  //
  Bool_t froml1 = false;
  //
  Bool_t delct = false;
  //
  // Output directory is the working directoy.
  //
  const char* outdir = gSystem->DirName(gSystem->DirName(file->GetPath()));
  //
  Int_t ri = 0;
  TString processFolder = Form("calorimeterFolder_%u",run);
  if ( calargc > 0 ){
    ri = 0;
    while ( ri < calargc ){
      if ( !strcmp(calargv[ri],"-processFolder") ) {
        if ( calargc < ri+1 ){
          throw -3;
        };
        processFolder = (TString)calargv[ri+1]; 
        ri++;
      };
      if ( !strcmp(calargv[ri],"-v") ||  !strcmp(calargv[ri],"--verbose") ) {
        verbose = true;
      };
      if ( !strcmp(calargv[ri],"-g") ||  !strcmp(calargv[ri],"--debug") ) {
        verbose = true;
        debug = true;
      };
      if ( !strcmp(calargv[ri],"--alltracks")  ) {
        trackanyway = true;
      };
      if ( !strcmp(calargv[ri],"--use-default-alig")  ) {
        mechal = true;
      };
      if ( !strcmp(calargv[ri],"--no-crosstalk")  ) {
        crosst = false;
      };
      if ( !strcmp(calargv[ri],"--mask-plane18X")  ) {
        mask18 = true;
      };
      if ( !strcmp(calargv[ri],"--unmask-plane18X")  ) {
        mask18 = false;
      };
      if ( !strcmp(calargv[ri],"--flight-crosstalk")  ) {
        ctground = false;
      };
      if ( !strcmp(calargv[ri],"--ct-use-pulse")  ) {
        usetable = false;
      };
      if ( !strcmp(calargv[ri],"--ct-use-table")  ) {
        usetable = true;
      };
      if ( !strcmp(calargv[ri],"--ground-crosstalk")  ) {
        ctground = true;
      };
      if ( !strcmp(calargv[ri],"--no-self-crosstalk")  ) {
        noselfct = true;
      };
      if ( !strcmp(calargv[ri],"--no-tracker")  ) {
        withtrk = false;
      };
      if ( !strcmp(calargv[ri],"--with-tracker")  ) {
        withtrk = true;
      };
      if ( !strcmp(calargv[ri],"--defrig")  ) {
        if ( calargc < ri+1 ){
          throw -3;
        };
        rigdefault = atof(calargv[ri+1]);       
        ri++;
      };
      if ( !strcmp(calargv[ri],"--no-alltracks")  ) {
        trackanyway = false;
      };
      if ( !strcmp(calargv[ri],"--highZnuclei")  ) {
        hZn = true;
      };
      if ( !strcmp(calargv[ri],"--no-highZnuclei")  ) {
        hZn = false;
      };
      if ( !strcmp(calargv[ri],"--selftrigger")  ) {
        st = true;
      };
      if ( !strcmp(calargv[ri],"--no-selftrigger")  ) {
        st = false;
      };
      if ( !strcmp(calargv[ri],"--no-level1")  ) {
        getl1 = false;
        cl1only = false;
      };
      if ( !strcmp(calargv[ri],"--delete-calo-tree")  ) {
        delct = true;
      };
      if ( !strcmp(calargv[ri],"--level1")  ) {
        getl1 = true;
      };
      if ( !strcmp(calargv[ri],"--ignore-h20")  ) {
        checksimu = false;
      };
      if ( !strcmp(calargv[ri],"--level1-only")  ) {
        cl1only = true;
        withtrk = false;
        getl1 = true;
      }
      if ( !strcmp(calargv[ri],"--from-level1")  ) {
        froml1 = true;
      }
      if ( !strcmp(calargv[ri],"--help")  ) {
        printf("\n\n CALORIMETER HELP CALLED\n\n");
        printf(" CaloCore options: \n");
        printf("  -v | --verbose       be verbose\n");
        printf("  -g | --debug         be really verbose\n");
        printf("  --defrig rig         rig is the default rigidity in GV to be used to\n");
        printf("                       obtain calorimeter variables in the routines\n");
        printf("                       \"alltracks\" and \"higZnuclei\" [default = 50]\n");
        printf("  --alltracks          fill the track related variables even in the case\n");
        printf("                       of no tracks from tracker and no selftrigger event\n");
        printf("                       when we have a calorimeter fit for both views [default]\n");
        printf("  --no-alltracks       fill the track related variables only in the case\n");
        printf("                       of a good track from tracker or selftrigger\n");
        printf("  --highZnuclei        call the routine to analyze high Z nuclei\n");
        printf("                       selftrigger events [default]\n");
        printf("  --no-highZnuclei     do not call the routine to analyze high Z nuclei\n");
        printf("                       selftrigger events\n");
        printf("  --no-tracker         do not use tracker level2\n"); 
        printf("  --with-tracker       use tracker level2 [default]\n"); 
        printf("  --no-crosstalk       do not apply crosstalk corrections\n"); 
        printf("  --ground-crosstalk   apply ground crosstalk corrections\n"); 
        printf("  --flight-crosstalk   apply flight crosstalk corrections [default]\n"); 
        printf("  --no-self-crosstalk  do not apply preamplifiers crosstalk corrections to the strip itself\n"); 
        printf("  --ct--use-pulse      flight crosstalk corrections from pulse calibrations \n"); 
        printf("  --ct--use-table      flight crosstalk corrections from calibration table [default] \n");      
        printf("  --selftrigger        process selftrigger events [default]\n");
        printf("  --no-selftrigger     skip selftrigger events\n");
        printf("  --delete-calo-tree   remove the ''Calorimeter'' TTree if found in the file - could cause fatal problems when reprocessing, use it with care!\n");
        printf("  --level1             save Level1 TBranch [default] \n");
        printf("  --no-level1          do not save Level1 TBranch\n");
        printf("  --level1-only        process level1 only (force --level1 flag)\n");
        printf("  --from-level1        process level2 data starting from level1 already saved in the file\n");        
        printf("  --ignore-h20         do not check if it is a file from simulations\n");
        printf("  --unmask-plane18X    process plane 18X as well [default]\n");
        printf("  --mask-plane18X      do not process plane 18X\n");
        printf("  --use-default-alig   use default mechanical alignement (defined in CaloLevel1.h)\n");
        throw -114;
      };
      ri++;
    };
  };
  //
  if ( verbose ){
    printf("\n");
    if ( getl1 ) printf(" Saving calorimeter level1 data \n");
    if ( cl1only ) printf(" Saving calorimeter level1 data ONLY \n");
    if ( froml1 ) printf(" Using level1 data saved in the file\n");
    if ( st ) printf(" Calling selftrigger subroutine \n");
    if ( hZn ) printf(" Calling high energy nuclei subroutine \n");
    if ( trackanyway ) printf(" Filling track related variables for all the possible tracks \n");
    if ( hZn || trackanyway ) printf(" => default assumed rigidity %f \n",rigdefault);
    if ( withtrk ) printf(" Using tracker level2 data \n");
    if ( mechal ) printf(" Using default mechanical alignement (defined in CaloLevel1.h)\n");
    if ( crosst ){
      printf(" Applying cross-talk corrections \n");
      if ( ctground ){
        printf(" => Using ground cross-talk coefficients \n");
      } else {
        printf(" => Using flight cross-talk coefficients... \n");
      };
      if ( usetable ){
        printf(" ... coming from tables \n");
      } else {
        printf(" ... coming from pulse calibrations \n");
      };
    } else {
      printf(" Do not applying cross-talk corrections \n");
    };
    if ( !checksimu ) printf(" Check on h20 TTree in level2 file skipped \n");
    printf("\n");
  };
  //
  // Working filename
  //
  TString outputfile;
  stringstream name;
  name.str("");
  name << outdir << "/";
  //
  // Variables.
  //
  TTree *tracker = 0;
  TTree *calo = 0;
  TTree *caloclone = 0;
  Bool_t reproc = false;
  Bool_t reprocall = false;
  UInt_t nevents = 0;
  UInt_t nobefrun = 0;
  UInt_t noaftrun = 0;
  UInt_t numbofrun = 0;
  UInt_t totnorun = 0;
  //
  Int_t code = 0;
  Int_t sgnl;
  //
  // calorimeter level2 classes
  //
  CaloLevel1 *c1 = 0;
  CaloLevel1 *c1clone = 0;
  if ( getl1 ){
    c1 = new CaloLevel1();
    c1clone = new CaloLevel1();
  };
  //
  // calorimeter level2 classes
  //
  CaloLevel2 *ca = new CaloLevel2();
  CaloLevel2 *caclone = new CaloLevel2();
  //
  TrkLevel2 *trk = new TrkLevel2();
  Int_t nevtrkl2 = 0;
  //
  UInt_t procev = 0;
  //
  // define variables where to store the absolute run header and run trailer times (unsigned long long integers, when set to a number use to store the correct number).
  //
  UInt_t runheadtime = 0;
  UInt_t runtrailtime = 0;
  UInt_t evfrom = 0;
  UInt_t evto = 0;
  UInt_t totfileentries = 0;
  UInt_t idRun = 0;
  Int_t id_reg_run=-1;
  stringstream ftmpname;
  TString fname;
  //
  // define variables for opening and reading level0 file
  //
  TFile *l0File = 0;
  TTree *l0tr = 0;
  TTree *softinfo = 0;
  TBranch *l0head = 0;
  TBranch *l0calo = 0;
  TBranch *l0trig = 0;
  pamela::EventHeader *eh = 0;
  pamela::PscuHeader *ph = 0;
  pamela::trigger::TriggerEvent *trig = 0;
  Int_t yodaver = 0;
  //
  // Define some basic variables
  // 
  CaloLevel0 *event = new CaloLevel0(); // NOTICE: very important to call here the constructor!
  event->SetCrossTalk(crosst);
  //  event->SetCrossTalkType(ctground);
  Int_t ict = -1;
  if ( ctground ) ict = 0;
  if ( !ctground ){
    ict = 1;
  };
  if ( !ctground && noselfct ){
    ict = 2;
  };
  event->SetCrossTalkType(ict);
  stringstream file2;
  stringstream file3;
  stringstream qy;
  //  Bool_t imtrack = false;
  Bool_t filled = false;
  //
  UInt_t caloevents = 0;
  stringstream calfile;
  stringstream aligfile;
  //
  Int_t i = -1;    
  Int_t itr = -1;    
  Int_t badevent = 0;
  Int_t totevent = 0;
  //
  UInt_t atime = 0;
  //
  //  Int_t S3 = 0;
  //  Int_t S2 = 0;
  //  Int_t S12 = 0;
  //  Int_t S11 = 0;
  UInt_t re = 0;
  UInt_t jumped = 0;
  //
  TString caloversion;
  ItoRunInfo *runinfo = 0;
  TArrayI *runlist = 0;
  //
  //  Float_t tmptrigty = -1.;      
  Int_t ntrkentry = 0;
  GL_PARAM *q4 = new GL_PARAM();
  UInt_t tttrkpar1 = 0;
  Bool_t trkpar1 = true;
  GL_ROOT *glroot = new GL_ROOT();
  GL_TIMESYNC *dbtime = 0;
  //
  Long64_t maxsize = 10000000000LL;  
  TTree::SetMaxTreeSize(maxsize);
  //
  //
  TFile *tempfile = 0;
  TTree *tempcalo = 0;
  Bool_t myfold = false;
  stringstream tempname;
  stringstream calofolder;
  tempname.str("");
  tempname << outdir;
  tempname << "/" << processFolder.Data();
  calofolder.str("");
  calofolder << tempname.str().c_str();
  tempname << "/calotree_run";
  tempname << run << ".root";  
  //
  // As a first thing we must check what we have to do: if run = -1 we must process all events in the file has been passed
  // if run != -1 we must process only that run but first we have to check if the branch calorimeter already exist in the file
  // if it exists we are reprocessing data and we must delete that entries, if not we must create it.
  // 
  if ( run == 0 ) reproc = true;
  //
  //
  //
  if ( !file->IsOpen() ){
    if ( verbose ) printf(" CALORIMETER - ERROR: cannot open file for writing\n");
    throw -101;    
  };
  //
  if ( delct ){
    TTree *T = (TTree*)file->Get("Calorimeter");
    if ( T ){
      if ( verbose ) printf(" CALORIMETER - REMOVING Calorimeter TTree \n");
      T->Delete("all");
    }
  }
  //
  TClonesArray *tcNucleiTrk = NULL;
  TClonesArray *tcExtNucleiTrk = NULL;
  TClonesArray *tcExtTrk = NULL;
  TClonesArray *tcaloNucleiTrk = NULL;
  TClonesArray *tcaloExtNucleiTrk = NULL;
  TClonesArray *tcaloExtTrk = NULL;
  Bool_t hasNucleiTrk = false;
  Bool_t hasExtNucleiTrk = false;
  Bool_t hasExtTrk = false;
  if ( withtrk ){
    //
    // Does it contain the Tracker tree?
    //
    tracker = (TTree*)file->Get("Tracker");
    if ( !tracker ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: no tracker tree\n");
      code = -102;
      goto closeandexit;
    }
    //    tracker->SetMaxVirtualSize(2500000000LL); // EM residual Tracker-new tree in level2 files when NEVENTS is big
    tracker->SetBranchAddress("TrkLevel2",&trk);  
    nevtrkl2 = tracker->GetEntries();
    //
    // Look for extended tracking algorithm
    //
    if ( verbose ) printf("Look for extended and nuclei tracking algorithms\n"); 
    // Nuclei tracking algorithm
    Int_t checkAlgo = 0;
    tcNucleiTrk =  new TClonesArray("TrkTrack");
    checkAlgo = tracker->SetBranchAddress("TrackNuclei",&tcNucleiTrk);    
    if ( !checkAlgo ){
      if ( verbose ) printf(" Nuclei tracking algorithm branch found! :D \n");
      hasNucleiTrk = true;
    } else {
      if ( verbose ) printf(" Nuclei tracking algorithm branch not found :( !\n");
      printf(" ok, this is not a problem (it depends on tracker settings) \n");
      delete tcNucleiTrk;
      tcNucleiTrk=NULL; // 10RED reprocessing bug
    }
    // Nuclei tracking algorithm using calorimeter points
    tcExtNucleiTrk =  new TClonesArray("ExtTrack");
    checkAlgo = tracker->SetBranchAddress("RecoveredTrackNuclei",&tcExtNucleiTrk);    
    if ( !checkAlgo ){
      if ( verbose ) printf(" Recovered nuclei tracking algorithm branch found! :D \n");
      hasExtNucleiTrk = true;
    } else {
      if ( verbose ) printf(" Recovered nuclei tracking algorithm branch not found :( !\n");
      printf(" ok, this is not a problem (it depends on tracker settings) \n");
      delete tcExtNucleiTrk;
      tcExtNucleiTrk=NULL; // 10RED reprocessing bug
    }
    // Tracking algorithm using calorimeter points
    tcExtTrk =  new TClonesArray("ExtTrack");
    checkAlgo = tracker->SetBranchAddress("RecoveredTrack",&tcExtTrk);
    if ( !checkAlgo ){
      if ( verbose ) printf(" Recovered track algorithm branch found! :D \n");
      hasExtTrk = true;
    } else {
      if ( verbose ) printf(" Recovered track algorithm branch not found :( !\n");
      printf(" ok, this is not a problem (it depends on tracker settings) \n");
      delete tcExtTrk;
      tcExtTrk=NULL; // 10RED reprocessing bug
    }
  }
  //
  // Is it a file from simulations?
  //
  if ( checksimu ){
    TTree *h20 = (TTree*)file->Get("h20");
    if ( h20 ){
      //
      // yes!
      //
      crosst = false;
      ctground = true;
      mechal = true;
      mask18 = true;
      if ( verbose ) printf("\n\n SIMULATION!!! Setting --use-default-alig and --no-crosstalk --mask-plane18X flags!\n\n");
      h20->Delete();
    };
  };
  //
  // Call runinfo
  //  
  sgnl = 0;
  runinfo = new ItoRunInfo(file);
  //
  // update versioning information and retrieve informations about the run to be processed
  //
  caloversion = CaloInfo(false);
  sgnl = runinfo->Update(run,"CALO",caloversion);
  //
  if ( sgnl ){
    if ( verbose ) printf(" CALORIMETER - ERROR: RunInfo exited with non-zero status\n");
    code = sgnl;
    goto closeandexit;
  } else {
    sgnl = 0;
  };
  //
  // number of events in the file BEFORE the first event of our run
  //
  nobefrun = runinfo->GetFirstEntry();
  //
  // total number of events in the file 
  //
  totfileentries = runinfo->GetFileEntries();
  //
  // first file entry AFTER the last event of our run
  //
  noaftrun = runinfo->GetLastEntry() + 1;
  //
  // number of run to be processed
  //
  numbofrun = runinfo->GetNoRun();
  //
  // number of runs in the file
  //
  totnorun = runinfo->GetRunEntries();
  //
  // Does it contain already a Calorimeter branch? if so we are reprocessing data, if not we must create it.
  // 
  caloclone = (TTree*)file->Get("Calorimeter");
  //
  if ( !caloclone ){
    reproc = false;
    if ( run == 0 && verbose ) printf(" CALORIMETER - WARNING: you are reprocessing data but calorimeter tree does not exist!\n");
    if ( runinfo->IsReprocessing() && run != 0 && verbose ) printf(" CALORIMETER - WARNING: it seems you are not reprocessing data but calorimeter\n versioning information already exists in RunInfo.\n");
    //
  } else {
    //
    //    caloclone->SetMaxVirtualSize(2500000000LL); // EM residual Tracker-new tree in level2 files when NEVENTS is big
    caloclone->SetAutoSave(900000000000000LL);
    reproc = true;
    //
    if ( verbose ) printf("\n Preparing the pre-processing...\n");
    //
    if ( run == 0 || totnorun == 1 ){
      //
      // if we are reprocessing everything we don't need to copy any old event and we can just create a new branch in the clone tree and jump steps 4/5/7.
      //
      if ( verbose ) printf("\n CALORIMETER - WARNING: Reprocessing all runs in the file\n");
      reprocall = true;
      //
    } else {
      //
      // we are reprocessing a single run
      //
      if ( verbose ) printf("\n CALORIMETER - WARNING: Reprocessing run number %u \n",run);
      reprocall = false;
      //
      //
      //
      gSystem->MakeDirectory(calofolder.str().c_str());
      myfold = true;
      tempfile = new TFile(tempname.str().c_str(),"RECREATE");
      tempcalo = caloclone->CloneTree(-1,"fast");
      tempcalo->SetName("Calorimeter-old");
      tempfile->Write();
      tempfile->Close();      
    };
    //
    // delete old tree
    //
    if ( debug ) printf(" Delete caloclone \n");
    if ( caloclone ) caloclone->Delete("all");
    //
    if ( verbose ) printf("\n ...done!\n");
    //
  }
  //
  // create calorimeter tree calo
  // 
  file->cd();
  calo = new TTree("Calorimeter-new","PAMELA Level2 calorimeter data");
  //  calo->SetMaxVirtualSize(2500000000LL); // EM residual Tracker-new tree in level2 files when NEVENTS is big
  calo->SetAutoSave(900000000000000LL);
  ca->Set();
  if ( !cl1only ) calo->Branch("CaloLevel2","CaloLevel2",&ca);
  //calo->Branch("CaloLevel2","CaloLevel2",&ca);
  if ( getl1 ) calo->Branch("CaloLevel1","CaloLevel1",&c1);
  //
  // create new branches for new tracking algorithms
  //
  if ( hasNucleiTrk ){
    tcaloNucleiTrk = new TClonesArray("CaloTrkVar",1);
    calo->Branch("TrackNuclei",&tcaloNucleiTrk);
  }
  if ( hasExtNucleiTrk ){
    tcaloExtNucleiTrk = new TClonesArray("CaloTrkVar",1);
    calo->Branch("RecoveredTrackNuclei",&tcaloExtNucleiTrk);
  }
  if ( hasExtTrk ){
    tcaloExtTrk = new TClonesArray("CaloTrkVar",1);
    calo->Branch("RecoveredTrack",&tcaloExtTrk);
  }

  //
  if ( reproc && !reprocall ){
    //
    // 
    //
    tempfile = TFile::Open(tempname.str().c_str(),"READ");
    caloclone = (TTree*)tempfile->Get("Calorimeter-old");
    //    caloclone->SetMaxVirtualSize(2500000000LL); // EM residual Tracker-new tree in level2 files when NEVENTS is big
    caloclone->SetAutoSave(900000000000000LL);
    caloclone->SetBranchAddress("CaloLevel2",&caclone);// EM reprocessing bug fixed 
    TBranch *havel1 = caloclone->GetBranch("CaloLevel1");
    if ( !havel1 && getl1 ) throw -117;
    if ( havel1 && !getl1 ) throw -118;
    if ( getl1 ) caloclone->SetBranchAddress("CaloLevel1",&c1clone);    
    //      
    if ( nobefrun > 0 ){ 
      if ( verbose ) printf("\n Pre-processing: copying events from the old tree before the processed run\n");   
      if ( verbose ) printf(" Copying %u events in the file which are before the beginning of the run %u \n",nobefrun,run);
      if ( verbose ) printf(" Start copying at event number 0, end copying at event number %u \n",nobefrun);
      for (UInt_t j = 0; j < nobefrun; j++){
        //
        if ( caloclone->GetEntry(j) <= 0 ) throw -36;     
        //
        // copy caclone to ca
        //
        if ( getl1 ) memcpy(&c1,&c1clone,sizeof(c1clone));
        memcpy(&ca,&caclone,sizeof(caclone));// EM reprocessing bug fixed 
        //
        // Fill entry in the new tree
        //
        calo->Fill();// EM reprocessing bug fixed 
        //
        if ( getl1 ) c1->Clear();
        ca->Clear();
        //
      }
      if ( verbose ) printf(" Finished successful copying!\n");
    }    
  }
  //
  // Get the list of run to be processed
  //
  runlist = runinfo->GetRunList();
  //
  // Loop over the run to be processed
  //
  for (UInt_t irun=0; irun < numbofrun; irun++){
    //
    badevent = 0;
    //
    idRun = runlist->At(irun);
    if ( verbose ) printf("\n\n\n ####################################################################### \n");
    if ( verbose ) printf("                    PROCESSING RUN NUMBER %u \n",idRun);
    if ( verbose ) printf(" ####################################################################### \n\n\n");
    //
    sgnl = runinfo->GetRunInfo(idRun);
    if ( sgnl ){
      if ( verbose ) printf(" CALORIMETER - ERROR: RunInfo exited with non-zero status\n");
      code = sgnl;
      goto closeandexit;
    } else {
      sgnl = 0;
    };
    id_reg_run = runinfo->ID_ROOT_L0;
    runheadtime = runinfo->RUNHEADER_TIME;
    runtrailtime = runinfo->RUNTRAILER_TIME;
    evfrom = runinfo->EV_FROM;
    evto = runinfo->EV_TO;
    //
    if ( id_reg_run == -1 ){
      if ( verbose ) printf("\n CALORIMETER - ERROR: no run with ID_RUN = %u \n\n Exiting... \n\n",idRun);
      code = -5;
      goto closeandexit;    
    };
    //
    // prepare the timesync for the db
    //
    TString host = glt->CGetHost();
    TString user = glt->CGetUser();
    TString psw = glt->CGetPsw();
    TSQLServer *dbc = TSQLServer::Connect(host.Data(),user.Data(),psw.Data());
    if ( !dbc->IsConnected() ) throw -116;
    stringstream myquery;
    myquery.str("");
    myquery << "SET time_zone='+0:00';";
    delete dbc->Query(myquery.str().c_str());
    delete dbc->Query("SET sql_mode = 'NO_UNSIGNED_SUBTRACTION';");
    //
    //    if ( !dbc->IsConnected() ) throw -116;
    dbtime = new GL_TIMESYNC(runinfo->ID_ROOT_L0,"ID",dbc);
    //
    // Search in the DB the path and name of the LEVEL0 file to be processed.
    //
    //    if ( !dbc->IsConnected() ) throw -116;
    glroot->Query_GL_ROOT(runinfo->ID_ROOT_L0,dbc);
    //
    ftmpname.str("");
    ftmpname << glroot->PATH.Data() << "/";
    ftmpname << glroot->NAME.Data();
    fname = ftmpname.str().c_str();
    //
    // print out informations
    //
    totevent = runinfo->NEVENTS;
    if ( verbose ) printf("\n LEVEL0 data file: %s \n",fname.Data());
    if ( verbose ) printf(" RUN HEADER absolute time is:  %u \n",runheadtime);
    if ( verbose ) printf(" RUN TRAILER absolute time is: %u \n",runtrailtime);
    if ( verbose ) printf(" %i events to be processed for run %u: from %i to %i (reg entries)\n\n",totevent,idRun,evfrom,evfrom+totevent);
    //
    //    if ( !totevent ) goto closeandexit;
    //
    // Open Level0 file
    //
    if ( l0File ) l0File->Close();
    l0File = new TFile(fname.Data());
    if ( !l0File ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: problems opening  Level0 file\n");
      code = -6;
      goto closeandexit;
    };
    l0tr = (TTree*)l0File->Get("Physics");
    if ( !l0tr ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: no Physics tree in Level0 file\n");
      l0File->Close();
      code = -7;
      goto closeandexit;
    };
    l0head = l0tr->GetBranch("Header");
    if ( !l0head ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: no Header branch in Level0 tree\n");
      l0File->Close();
      code = -8;
      goto closeandexit;    
    };
    l0calo = l0tr->GetBranch("Calorimeter");    
    if ( !l0calo ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: no Calorimeter branch in Level0 tree\n");
      l0File->Close();
      code = -103;
      goto closeandexit;
    };
    l0trig = l0tr->GetBranch("Trigger");
    if ( !l0trig ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: no Trigger branch in Level0 tree\n");
      l0File->Close();
      code = -104;
      goto closeandexit;
    };
    //
    l0tr->SetBranchAddress("Trigger", &trig);
    l0tr->SetBranchAddress("Header", &eh);
    //
    softinfo = (TTree*)l0File->Get("SoftInfo");
    if ( softinfo ){
      softinfo->SetBranchAddress("SoftInfo",&yodaver);
      if ( softinfo->GetEntry(0) <= 0 ) throw -36;
    };
    if ( debug ) printf(" LEVEL0 FILE GENERATED WITH YODA VERSION %i \n",yodaver);    
    //
    if ( withtrk ){
      if ( trkpar1 || ( tttrkpar1 != 0 && tttrkpar1 < runheadtime ) ){
        trkpar1 = false;
        Int_t glpar = q4->Query_GL_PARAM(runinfo->RUNHEADER_TIME,1,dbc);
        if ( glpar < 0 ){
          code = glpar;
          goto closeandexit;
        };
        tttrkpar1 = q4->TO_TIME;
        // ----------------------------
        // Read the magnetic field
        // ----------------------------
        if ( verbose ) printf(" Reading magnetic field maps at %s\n",(q4->PATH+q4->NAME).Data());
        trk->LoadField(q4->PATH+q4->NAME);
        if ( verbose ) printf("\n");
      };
    };
    //
    // Close DB connection
    //
    if ( dbc ){
      dbc->Close();
      delete dbc;
      dbc = 0;
    };
    //
    //
    // Construct the event object, look for the calibration which include the first header
    //  
    sgnl = 0;
    if ( verbose ) printf(" Check for calorimeter calibrations and initialize event object \n");
    //    if ( !dbc->IsConnected() ) throw -116;
    event->ProcessingInit(glt,runheadtime,sgnl,l0tr,debug,verbose);
    if ( mask18 ){
      event->MaskPlane18X();
    } else {
      event->UnMaskPlane18X();
    };
    if ( verbose ) printf("\n");
    if ( sgnl == 100 ) {
      code = sgnl;
      if ( verbose ) printf(" CALORIMETER - WARNING: run header not included in any calibration interval\n"); 
      sgnl = 0;
    };
    if ( sgnl ){
      l0File->Close();
      code = sgnl;
      goto closeandexit;
    };
    //
    qy.str("");
    //
    nevents = l0head->GetEntries();
    caloevents = l0calo->GetEntries();
    //
    if ( nevents < 1 && totevent ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: Level0 file is empty\n\n");
      l0File->Close();
      code = -11;
      goto closeandexit;
    };
    //
    if ( evto > nevents-1 && totevent ) {
      if ( verbose ) printf(" CALORIMETER - ERROR: too few entries in the registry tree\n");
      l0File->Close();
      code = -12;
      goto closeandexit;
    };
    //
    // Check if we have to load parameter files
    //
    sgnl = 0;
    sgnl = event->ChkParam(glt,runheadtime,mechal); // calorimeter parameter files
    if ( sgnl < 0 ){
      code = sgnl;
      l0File->Close();
      goto closeandexit;
    };
    //
    // Calculate the cross talk corrections needed for this run using calibration informations
    //
    if ( crosst && !ctground ){
      sgnl = 0;
      sgnl = event->CalcCrossTalkCorr(glt,runheadtime,usetable); 
      if ( sgnl < 0 ){
        code = sgnl;
        l0File->Close();
        goto closeandexit;
      };   
    };
    //
    // run over all the events of the run
    //
    if ( verbose ) printf("\n Ready to start! \n\n Processed events: \n\n");
    //
    for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+runinfo->NEVENTS); re++){
    //    for ( re = runinfo->EV_FROM; re < (runinfo->EV_FROM+5000); re++){
    //for ( re = 92012+3400; re < 92012+3700; re++){
    //for ( re = 4451+2833; re < 4451+2836  ; re++){
      //      printf(" i = %i \n",re-200241);
      //
      if ( procev%1000 == 0 && procev > 0 && verbose ) printf(" %iK \n",procev/1000);   
      //
      if ( debug ) printf("\n\n\n EVENT NUMBER %i \n",procev); 
      //
      if ( l0head->GetEntry(re) <= 0 ) throw -36;
      //
      // absolute time of this event
      //
      ph = eh->GetPscuHeader();
      atime = dbtime->DBabsTime(ph->GetOrbitalTime());  
      //
      //
      //
      if ( re > caloevents-1 ){
        if ( verbose ) printf(" CALORIMETER - ERROR: no physics events with entry = %i in Level0 file\n",i);
        l0File->Close();
        code = -112;
        goto closeandexit;
      };
      //
      if ( atime > (runtrailtime+1) || atime < (runheadtime-1)  ) {
        if ( verbose ) printf(" CALORIMETER - WARNING: event at time outside the run time window, skipping it\n");
        jumped++;
        goto jumpev;
      };
      //
      // retrieve tracker informations
      //
      if ( !reprocall ){
        itr = nobefrun + (re - evfrom - jumped);
        //itr = re-(46438+200241);
      } else {
        itr = runinfo->GetFirstEntry() + (re - evfrom - jumped);
      };
      //
      if ( withtrk ){
        if ( itr > nevtrkl2 ){  
          if ( verbose ) printf(" CALORIMETER - ERROR: no tracker events with entry = %i in Level2 file\n",itr);
          l0File->Close();
          code = -113;
          goto closeandexit; 
        }
        //
        trk->Clear();
        //
        //
        // Clones array must be cleared before going on
        //
        if ( hasNucleiTrk ){
          tcNucleiTrk->Delete();
          tcaloNucleiTrk->Delete();
        }
        if ( hasExtNucleiTrk ){
          tcExtNucleiTrk->Delete();
          tcaloExtNucleiTrk->Delete();
        }          
        if ( hasExtTrk ){
          tcExtTrk->Delete();
          tcaloExtTrk->Delete();
        }
        //
        if ( tracker->GetEntry(itr) <= 0 ) throw -36; 
        //
      }
      //
      procev++;
      //
      // start processing
      //
      if ( getl1 ) c1->Clear();
      ca->Clear();
      //
      // determine who generate the trigger for this event (TOF, S4/PULSER, CALO) 
      //
      if ( l0trig->GetEntry(re) <= 0 ) throw -36;
//       S3 = 0;
//       S2 = 0;
//       S12 = 0;
//       S11 = 0;
//       S3 = trig->patterntrig[2];
//       S2 = trig->patterntrig[3];
//       S12 = trig->patterntrig[4];
//       S11 = trig->patterntrig[5];
//       if ( trig->patterntrig[1] & (1<<0) ) tmptrigty = 1.;
//       if ( trig->patterntrig[0] ) tmptrigty = 2.;
//       if ( S3 || S2 || S12 || S11 )  tmptrigty = 0.;    
//       if ( !(trig->patterntrig[1] & (1<<0)) && !trig->patterntrig[0] && !S3 && !S2 && !S12 && !S11 ) tmptrigty = 1.;
//       event->clevel2->trigty = tmptrigty;
      event->clevel2->trigty = (Float_t)IsCaloSelfTrigger(trig->trigconf,(UInt_t*)trig->patterntrig);
      if ( debug ) printf(" starting with trigty %f \n",event->clevel2->trigty);
      //
      // check if the calibration we are using is still good, if not load another calibration
      //
      sgnl = 0;
      sgnl = event->ChkCalib(glt,atime);
      if ( sgnl < 0 ){
        code = sgnl;
        goto closeandexit;
      };
      if ( sgnl == 100 ){
        code = sgnl;
        if ( verbose ) printf(" CALORIMETER - WARNING: data not associated to any calibration interval\n"); 
        badevent++;
        sgnl = 0;      
      };
      //
      // do we have at least one track from the tracker? this check has been disabled
      //
      event->clevel1->good2 = 1;
      //
      // use the whole calorimeter, 22 W planes
      //
      event->clevel1->npla = 22;
      //
      // Use the standard silicon planes shifting
      //
      event->clevel1->reverse = 0;
      //
      //
      // Calibrate calorimeter event "re" and store output in the two structures that will be passed to fortran routine
      //
      event->Calibrate(re);      
      //
      // Here we have calibrated data, ready to be passed to the FORTRAN routine which will extract topological variables.
      //
      //
      // Calculate variables common to all tracks (qtot, nstrip, etc.)
      //
      if ( !cl1only ) event->GetCommonVar();
      //
      // Fill common variables
      //
      if ( cl1only ){
        event->FillCommonVar(c1);
      } else {
        event->FillCommonVar(c1,ca);
      }
      //
      // Calculate variables related to tracks only if we have at least one track (from selftrigger and/or tracker)
      //
      ntrkentry = 0;
      //
      filled = false;
      // 
      // skip track-related if processing level1 only
      //
      if ( !cl1only ){
        //
        // Run over tracks (tracker or calorimeter )
        //
        if ( withtrk ){
          for(Int_t nt=0; nt < trk->ntrk(); nt++){  
            //
            event->clevel1->good2 = 1;
            //
            TrkTrack *ptt = trk->GetStoredTrack(nt); 
            //
            event->clevel1->trkchi2 = 0;
            //
            // Copy the alpha vector in the input structure
            //
            for (Int_t e = 0; e < 5 ; e++){
              event->clevel1->al_p[e][0] = ptt->al[e];
            };    
            //
            // Get tracker related variables for this track
            //
            event->GetTrkVar();
            //
            // Save tracker track sequence number
            //  
            event->trkseqno = nt;
            //
            // Copy values in the class ca from the structure clevel2
            //
            event->FillTrkVar(ca,ntrkentry);
            ntrkentry++;        
            filled = true;
            //
          } // loop on all the tracks
          //
          // Code for extended tracking algorithm: 
          //
          if ( hasNucleiTrk ){
            Int_t ttentry = 0;
            for(Int_t nt=0; nt < tcNucleiTrk->GetEntries() ; nt++){  
              //
              event->clevel1->good2 = 1;
              //
              TrkTrack *ptt = (TrkTrack*)(tcNucleiTrk->At(nt)); 
              //
              event->clevel1->trkchi2 = 0;
              //
              // Copy the alpha vector in the input structure
              //
              for (Int_t e = 0; e < 5 ; e++){
                event->clevel1->al_p[e][0] = ptt->al[e];
              };          
              //
              // Get tracker related variables for this track
              //
              event->GetTrkVar();
              //
              // Save tracker track sequence number
              //        
              event->trkseqno = nt;
              //
              // Copy values in the class ca from the structure clevel2
              //
              event->FillTrkVar(tcaloNucleiTrk,ttentry);
              ttentry++;        
              //
            } // loop on all the tracks
          }
          
          if ( hasExtNucleiTrk ){
            Int_t ttentry = 0;
            for(Int_t nt=0; nt < tcExtNucleiTrk->GetEntries() ; nt++){  
              //
              event->clevel1->good2 = 1;
              //
              ExtTrack *ptt = (ExtTrack*)(tcExtNucleiTrk->At(nt)); 
              //
              event->clevel1->trkchi2 = 0;
              //
              // Copy the alpha vector in the input structure
              //
              for (Int_t e = 0; e < 5 ; e++){
                event->clevel1->al_p[e][0] = ptt->al[e];
              };          
              //
              // Get tracker related variables for this track
              //
              event->GetTrkVar();
              //
              // Save tracker track sequence number
              //        
              event->trkseqno = nt;
              //
              // Copy values in the class ca from the structure clevel2
              //
              event->FillTrkVar(tcaloExtNucleiTrk,ttentry);
              ttentry++;        
              //
            } // loop on all the tracks
          }

          if ( hasExtTrk ){
            Int_t ttentry = 0;
            for(Int_t nt=0; nt < tcExtTrk->GetEntries() ; nt++){  
              //
              event->clevel1->good2 = 1;
              //
              ExtTrack *ptt = (ExtTrack*)(tcExtTrk->At(nt));
              //
              event->clevel1->trkchi2 = 0;
              //
              // Copy the alpha vector in the input structure
              //
              for (Int_t e = 0; e < 5 ; e++){
                event->clevel1->al_p[e][0] = ptt->al[e];
              };          
              //
              // Get tracker related variables for this track
              //
              event->GetTrkVar();
              //
              // Save tracker track sequence number
              //        
              event->trkseqno = nt;
              //
              // Copy values in the class ca from the structure clevel2
              //
              event->FillTrkVar(tcaloExtTrk,ttentry);
              ttentry++;        
              //
            } // loop on all the tracks
          }

        }
        // 
        // if no tracks found but there is the possibility to have a good track we should try to calculate anyway the track related variables using the calorimeter 
        // fit of the track (to be used for example when TRK is off due to any reason like IPM3/5 off).
        // here we make an event selection so it must be done very carefully...
        //
        // conditions are: 0) no track from the tracker 1) we have a track fit both in x and y 2) no problems with calo for this event 3) no selftrigger event
        //
        if ( trackanyway && !filled && event->clevel2->npcfit[0] >= 2 && event->clevel2->npcfit[1] >= 2 && event->clevel2->good != 0 && event->clevel2->trigty < 2. ){
          if ( debug ) printf(" Event with a track not fitted by the tracker at entry %i \n",itr);
          //
          // Disable "track mode" in the fortran routine
          //
          event->clevel1->good2 = 0;
          event->clevel1->riginput = rigdefault;
          if ( debug ) printf(" Using as default rigidity: %f \n",event->clevel1->riginput);
          //
          // We have a selftrigger event to analyze.
          //
          for (Int_t e = 0; e < 5 ; e++){
            event->clevel1->al_p[e][0] = 0.;
            event->clevel1->al_p[e][1] = 0.;
          }
          event->clevel1->trkchi2 = 0;
          //
          event->GetTrkVar();
          //
          // if we had no problem (clevel1->good2 = 0, NOTICE zero, not one in this mode!), fill and go on
          //
          if ( event->clevel1->good2 == 0 ) {
            //
            // In selftrigger mode the trkentry variable is set to -1
            //
            event->trkseqno = -3;
            //
            // Copy values in the class ca from the structure clevel2
            //
            if ( debug ) printf(" -3 begin \n");
            event->FillTrkVar(ca,ntrkentry);
            if ( debug ) printf(" -3 end \n");
            ntrkentry++;
            filled = true;
            //
          } else {
            if ( verbose ) printf(" Selftrigger: problems with event at entry %i \n",itr);
          }
          //
        }
        //
        // Call high energy nuclei routine
        //
        if ( hZn && event->clevel2->trigty >= 2. ){
          if ( debug ) printf(" Calling selftrigger high energy nuclei routine for entry %i \n",itr);
          //
          // Disable "track mode" in the fortran routine
          //
          event->clevel1->good2 = 0;
          //
          // Set high energy nuclei flag to one
          // 
          event->clevel1->hzn = 1; 
          event->clevel1->riginput = rigdefault;
          //
          // We have a selftrigger event to analyze.
          //
          for (Int_t e = 0; e < 5 ; e++){
            event->clevel1->al_p[e][0] = 0.;
            event->clevel1->al_p[e][1] = 0.;
          }
          event->clevel1->trkchi2 = 0;
          //
          event->GetTrkVar();
          //
          // if we had no problem (clevel1->good2 = 0, NOTICE zero, not one in this mode!), fill and go on
          //
          if ( event->clevel1->good2 == 0 ) {
            //
            // In selftrigger mode the trkentry variable is set to -1
            //
            event->trkseqno = -2;
            //
            // Copy values in the class ca from the structure clevel2
            //
            event->FillTrkVar(ca,ntrkentry);
            ntrkentry++;
            filled = true;
            //
          } else {
            if ( verbose ) printf(" Selftrigger: problems with event at entry %i \n",itr);
          }
          //
        }
        //
        // self trigger event
        //
        if ( st && event->clevel2->trigty >= 2. ){
          if ( verbose ) printf(" Selftrigger event at entry %i \n",itr);
          //
          // Disable "track mode" in the fortran routine
          //
          event->clevel1->good2 = 0;
          //
          // disable high enery nuclei flag;
          //
          event->clevel1->hzn = 0; 
          //
          // We have a selftrigger event to analyze.
          //
          for (Int_t e = 0; e < 5 ; e++){
            event->clevel1->al_p[e][0] = 0.;
            event->clevel1->al_p[e][1] = 0.;
          };
          event->clevel1->trkchi2 = 0;
          //
          event->GetTrkVar();
          //
          // if we had no problem (clevel2->good = 0, NOTICE zero, not one in selftrigger mode!), fill and go on
          //
          if ( event->clevel1->good2 == 0 ) {
            //
            // In selftrigger mode the trkentry variable is set to -1
            //
            event->trkseqno = -1;
            //
            // Copy values in the class ca from the structure clevel2
            //
            event->FillTrkVar(ca,ntrkentry);
            ntrkentry++;
            filled = true;
            //
          } else {
            if ( verbose ) printf(" Selftrigger: problems with event at entry %i \n",itr);
          }
        }
        //
        if ( !filled ) badevent++;
      }
      //
      // Clear structures used to communicate with fortran
      //
      event->ClearStructs();
      //
      // Fill the rootple 
      //
      calo->Fill();
      //    
      //      delete ca;
      //
    jumpev:
      if ( !debug ) debug = false;
      //
    };
    //
    if ( verbose ) printf("\n SUMMARY:\n");
    if ( verbose ) printf(" Total number of events: %i \n",totevent);
    if ( verbose ) printf(" Events with at least one track: %i \n",totevent-badevent);
    if ( verbose ) printf(" Events without tracks: %i \n",badevent);
    //
    if ( badevent == totevent ){
      if ( verbose ) printf("\n CALORIMETER - WARNING no tracks or good events in run %u \n",idRun);
      code = 101;    
    };
    //
    delete dbtime;
    //
    // Clear variables before processing another run  (needed to have always the same result when reprocessing data with the same software).
    //
    event->RunClose();
    if ( l0File ) l0File->Close();
    //
  }; // process all the runs
  //
  if ( verbose ) printf("\n Finished processing data \n");
  //
 closeandexit:
  //
  if ( !reprocall && reproc && code >= 0 ){
    //
    if ( totfileentries > noaftrun ){
      if ( verbose ) printf("\n Post-processing: copying events from the old tree after the processed run\n");   
      if ( verbose ) printf(" Copying %u events in the file which are after the end of the run %u \n",(totfileentries-noaftrun),run);
      if ( verbose ) printf(" Start copying at event number %u end copying at event number %u \n",noaftrun,totfileentries);
      for (UInt_t j = noaftrun; j < totfileentries; j++ ){
        //
        // Get entry from old tree
        //
        if ( caloclone->GetEntry(j) <= 0 ) throw -36;     
        //
        // copy caclone to ca
        //
        //EE if ( getl1 ) c1->Clear();
        //ca->Clear();
        //
        if ( getl1 ) memcpy(&c1,&c1clone,sizeof(c1clone));
        memcpy(&ca,&caclone,sizeof(caclone));// EM reprocessing bug fixed 
        if ( debug ) printf(" CA %f CACL %f \n",ca->qtot,caclone->qtot);
        //
        // Fill entry in the new tree
        //
        calo->Fill();// EM reprocessing bug fixed 
        //
      }
      if ( verbose ) printf(" Finished successful copying!\n");
    }
  }
  //
  // Case of no errors: close files, delete old tree(s), write and close level2 file 
  //
  if ( l0File ) l0File->Close();
  if ( tempfile ) tempfile->Close();            
  if ( myfold ) gSystem->Unlink(tempname.str().c_str());
  //
  if ( code < 0 ) printf("\n CALORIMETER - ERROR: an error occurred, try to save anyway...\n");
  if ( verbose ) printf("\n Writing and closing rootple\n");
  if ( debug ) printf("\n Setting name\n");
  if ( calo ) calo->SetName("Calorimeter");    
  if ( debug ) printf("\n Writing calo tree\n");
  if ( file ){
    file->cd();
    if ( calo ) calo->Write("Calorimeter", TObject::kOverwrite); // 10RED CRASH when exiting with no tracker, calo is not defined
  };
  //
  if ( debug ) printf("\n Unlink folder\n");
  if ( myfold ) gSystem->Unlink(calofolder.str().c_str());
  //
  //  if ( ca ) delete ca;
  //  if ( caclone ) delete caclone;
  //  if ( c1 ) delete c1;
  //  if ( c1clone ) delete c1clone;
  //  if ( trk ) delete trk; // cannot delete anything since now all these objects are owned by TFile file! 

  if ( tcNucleiTrk ){
    tcNucleiTrk->Delete();
    delete tcNucleiTrk;
    tcNucleiTrk = NULL;
  }
  if ( tcExtNucleiTrk ){
    tcExtNucleiTrk->Delete();
    delete tcExtNucleiTrk;
    tcExtNucleiTrk = NULL;
  }
  if ( tcExtTrk ){
    tcExtTrk->Delete();
    delete tcExtTrk;
    tcExtTrk = NULL;
  }

  if ( debug ) printf("\n Delete q4\n");
  if ( q4 ) delete q4;
  if ( debug ) printf("\n Delete glroot\n");
  if ( glroot ) delete glroot;
  if ( debug ) printf("\n Close runinfo\n");
  if ( runinfo ) runinfo->Close();    
  if ( debug ) printf("\n Delete runinfo\n");
  if ( runinfo ) delete runinfo; 
  //
  // the end
  //
  if ( verbose ) printf("\n Exiting...\n");
  if ( code < 0 ) throw code;
  return(code);
}

